NetworkDataCompanion/DESCRIPTION at main · QuackenbushLab/NetworkDataCompanion · GitHub

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Package: NetworkDataCompanion
Title: Tools for Analyzing TCGA and GTEx Data
Version: 0.1.0
Authors@R:
    c(person("Chen", "Chen", email = "chenchen9945@gmail.com",role = "aut",
     comment = c(ORCID = "0000-0002-8042-7201")),
    person("Panagiotis", "Mandros", email = "mandros.p@gmail.com", role = c("aut"),
           comment = c(ORCID = "0009-0008-9638-9722")),
    person("Viola", "Fanfani", email = "vfanfani@hsph.harvard.edu", role = c("aut"),
           comment = c(ORCID = "0000-0003-3852-6908")),
    person("Jonas", "Fischer", email = "jonas.fischer@mpi-inf.mpg.de", role = c("aut"),
           comment = c(ORCID = "0000-0002-6459-5053")),
    person("Panagiotis", "Mandros", email = "mandros.p@gmail.com", role = c("aut"),
           comment = c(ORCID = "0009-0008-9638-9722")),
    person("Soel", "Micheletti", email = "smicheletti@hsph.harvard.edu", role = c("aut"),
           comment = c(ORCID = "0000-0001-5402-9237")),
    person("Kate Hoff", "Shutta",  email = "kshutta@hsph.harvard.edu",role = c("aut","cre"),
      comment = c(ORCID = "0000-0003-0402-3771")))
Description: An R library of utilities for performing analyses on TCGA and GTEx data using the Network Zoo (https://netzoo.github.io).
License: GPL-3
biocViews:
Depends:
  AnnotationDbi,
  data.table,
  dplyr,
  edgeR,
  EpiSCORE,
  GenomicDataCommons,
  huge,
  magrittr,
  methods,
  org.Hs.eg.db,
  presto,
  recount,
  recount3,
  stringr,
  TCGAPurityFiltering,
  TCGAutils,
  testthat,
  tidyr
Remotes:
  pmandros/TCGAPurityFiltering,
  immunogenomics/presto,
  aet21/EpiSCORE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests:
    devtools,
    knitr,
    rmarkdown,
    rmdformats
VignetteBuilder: knitr