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refactor: unify ProtocolInput classes with shared base #53

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Run time

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Job	Run time
Lint	2s
Python 3.12 on ubuntu-latest	2s
Python 3.10 on ubuntu-latest	3s
Python 3.12 on macos-latest	3s
Python 3.13 on ubuntu-latest	2s
Python 3.14 on macos-latest	3s
Python 3.13 on macos-latest	2s
Python 3.10 on macos-latest	2m 55s
Python 3.12 on windows-latest	2s
Python 3.11 on macos-latest	3s
Python 3.13 on windows-latest	2s
Python 3.11 on windows-latest	4s
Python 3.11 on ubuntu-latest	2s
Python 3.14 on windows-latest	15s
Python 3.10 on windows-latest	3s
Python 3.14 on ubuntu-latest	2s
	3m 45s