index.Rmd

---
title: "Introductory Bioinformatics for VAI Users"
author: "The Bioinformatics and Biostatistics Core (BBC)"
site: bookdown::bookdown_site
output: bookdown::gitbook
documentclass: book
bibliography: [packages.bib]
biblio-style: apalike
link-citations: yes
github-repo: vari-bbc/Intro_to_Linux_for_HPC
theme: "yeti"
description: "Bioinformatics tutorials with hands-on exercises and examples."
---

# **Introduction**

This book is divided into three sections:

1. Basic command-line commands on the High-Performance Computing System (HPC).
2. Performing a simple RNA-Seq analysis from read alignment to the identification of differentially expressed genes (DEGs).
3. TBD

```{r include=FALSE}
# automatically create a bib database for R packages
knitr::write_bib(c(
  .packages(), 'bookdown', 'knitr', 'rmarkdown'
), 'packages.bib')
```