From 1f91e3daa6788e93d24c77e8c883c9ab6a5961fa Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 19 Jan 2026 20:54:52 +0000 Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/mwouts/jupytext: v1.18.1 → v1.19.0bis](https://github.com/mwouts/jupytext/compare/v1.18.1...v1.19.0bis) --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index ed381c7e..2fea5238 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,6 +1,6 @@ repos: - repo: https://github.com/mwouts/jupytext - rev: v1.18.1 + rev: v1.19.0bis hooks: - id: jupytext args: [--sync] From 1790d7c926c7b43bdd9d0ebfc4269c0c885bd9c4 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 19 Jan 2026 20:55:03 +0000 Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- examples/Advanced_Sampling_Introduction.md | 2 +- examples/Installing_a_PySAGES_Environment.md | 2 +- examples/hoomd-blue/ann/Butane_ANN.md | 2 +- examples/hoomd-blue/cff/Butane_CFF.md | 2 +- examples/hoomd-blue/funn/Butane_FUNN.md | 2 +- examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md | 2 +- examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md | 2 +- .../hoomd-blue/umbrella_integration/Umbrella_Integration.md | 2 +- examples/openmm/harmonic_bias/Harmonic_Bias.md | 2 +- examples/openmm/metad/Metadynamics-ADP.md | 2 +- examples/openmm/metad/nacl/Metadynamics_NaCl.md | 2 +- examples/openmm/spectral_abf/ADP_SpectralABF.md | 2 +- 12 files changed, 12 insertions(+), 12 deletions(-) diff --git a/examples/Advanced_Sampling_Introduction.md b/examples/Advanced_Sampling_Introduction.md index ccb08139..dd703f61 100644 --- a/examples/Advanced_Sampling_Introduction.md +++ b/examples/Advanced_Sampling_Introduction.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/Installing_a_PySAGES_Environment.md b/examples/Installing_a_PySAGES_Environment.md index 725468f3..f72a2136 100644 --- a/examples/Installing_a_PySAGES_Environment.md +++ b/examples/Installing_a_PySAGES_Environment.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/ann/Butane_ANN.md b/examples/hoomd-blue/ann/Butane_ANN.md index cde5d549..ca8dd207 100644 --- a/examples/hoomd-blue/ann/Butane_ANN.md +++ b/examples/hoomd-blue/ann/Butane_ANN.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/cff/Butane_CFF.md b/examples/hoomd-blue/cff/Butane_CFF.md index 8f69b73c..d2e01d60 100644 --- a/examples/hoomd-blue/cff/Butane_CFF.md +++ b/examples/hoomd-blue/cff/Butane_CFF.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/funn/Butane_FUNN.md b/examples/hoomd-blue/funn/Butane_FUNN.md index 90dde68d..5bd5e27e 100644 --- a/examples/hoomd-blue/funn/Butane_FUNN.md +++ b/examples/hoomd-blue/funn/Butane_FUNN.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md b/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md index 996edc70..ff460912 100644 --- a/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md +++ b/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md b/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md index 5e15714c..02c61e7b 100644 --- a/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md +++ b/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md @@ -6,7 +6,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 language: python diff --git a/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md b/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md index e36ebccb..d7982e69 100644 --- a/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md +++ b/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/openmm/harmonic_bias/Harmonic_Bias.md b/examples/openmm/harmonic_bias/Harmonic_Bias.md index 0285b28a..c4404e07 100644 --- a/examples/openmm/harmonic_bias/Harmonic_Bias.md +++ b/examples/openmm/harmonic_bias/Harmonic_Bias.md @@ -6,7 +6,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 language: python diff --git a/examples/openmm/metad/Metadynamics-ADP.md b/examples/openmm/metad/Metadynamics-ADP.md index 5e19c1f4..0a9255f3 100644 --- a/examples/openmm/metad/Metadynamics-ADP.md +++ b/examples/openmm/metad/Metadynamics-ADP.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/openmm/metad/nacl/Metadynamics_NaCl.md b/examples/openmm/metad/nacl/Metadynamics_NaCl.md index 6e0c2c60..c6c266e6 100644 --- a/examples/openmm/metad/nacl/Metadynamics_NaCl.md +++ b/examples/openmm/metad/nacl/Metadynamics_NaCl.md @@ -6,7 +6,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/examples/openmm/spectral_abf/ADP_SpectralABF.md b/examples/openmm/spectral_abf/ADP_SpectralABF.md index b5084347..6db79599 100644 --- a/examples/openmm/spectral_abf/ADP_SpectralABF.md +++ b/examples/openmm/spectral_abf/ADP_SpectralABF.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.18.1 + jupytext_version: 1.19.0 kernelspec: display_name: Python 3 name: python3