AFQ-Insight-Autoencoder-Plotting/.gitignore at main · SamChou05/AFQ-Insight-Autoencoder-Plotting · GitHub

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# AFQ-Insight-Autoencoder-Plotting .gitignore
# This file ignores all temporary/transferred content while keeping analysis code

# CSV Files - Training metrics and performance data
csv_files/
*.csv
**/csv_files/**

# Model Weights - PyTorch model files
model_weights/
*.pth
**/model_weights/**

# Generated Plots and Visualizations
plots/
**/plots/**
*.png
*.jpg

# Confusion Matrices and Classification Results
confusion_matrix/
**/confusion_matrix/**

# Heatmaps
heatmaps/
**/heatmaps/**

# Summaries
summaries/
**/summaries/**

# Log Files from Experiments
*.out
*.log
*.err
slurm-*.out

# Jupyter Notebook checkpoints
.ipynb_checkpoints/
*/.ipynb_checkpoints/*

# Environments
.env
.venv
env/

# Individual tract directories with results
TRACT_RANKING/tract_*/
!TRACT_RANKING/tract_*/.gitkeep

# Training averages data (generated)
training_averages/*.csv
training_averages/plots/

# Results summary data (generated)
results_summary/*.csv

# Any experiment-specific log files
experiment_*.log
training_*.log

# =============================================================================
# EXCEPTIONS - Files to KEEP despite patterns above
# =============================================================================

# Keep README files everywhere
!README.md
!**/README.md

# Keep analysis notebooks and scripts
!*.ipynb
!*.py

# Keep configuration templates and examples
!**/example_*.csv
!**/template_*.json
!config_template.*

# Keep directory structure files
!.gitkeep
!**/.gitkeep

# Keep documentation
!*.md
!docs/

# Keep specific configuration files that are part of the repo
!tract_names.json
!tract_data_types.json
!TRACT_RANKING/tract_names.json
!TRACT_RANKING/tract_data_types.json

# Keep requirements and setup files
!requirements.txt
!setup.py
!environment.yml