pacbio_snakemake/CITATION.cff at main · SilkeAllmannLab/pacbio_snakemake · GitHub

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# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: PacBio Iso-Seq Snakemake processing pipeline
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: 'marc '
    email: m.galland@uva.nl
    affiliation: University of Amsterdam
    family-names: galland
    orcid: 'https://orcid.org/0000-0003-2161-8689'
  - given-names: tijs
    family-names: bliek
    affiliation: University of Amsterdam
    email: m.bliek@uva.nl
    orcid: 'https://orcid.org/0000-0002-0488-4873'
identifiers:
  - type: url
    value: >-
      https://github.com/SilkeAllmannLab/pacbio_snakemake
    description: 'GitHub repository '
repository-code: 'https://github.com/SilkeAllmannLab/pacbio_snakemake'
abstract: >-
  A Snakemake pipeline to go from raw .subreads.bam
  PacBio Iso-Seq to assembled mRNA isoforms (FASTA
  format).

  Optionally, the pipeline can also align the
  assembled mRNA isoforms to a genomic reference to
  generate a genome annotation in GFF format.
keywords:
  - snakemake
  - pacbio
  - iso-seq
  - long read sequencing
  - pipeline
  - bioinformatics
license: BSD-3-Clause-Clear