Describe the bug
The name of the resulting expression file after running Biotea prepare affimetrix is wrong: it's always expression_data.csv instead of what is passed to the command.
To Reproduce
Steps to reproduce the behavior:
- Download some affymetrix .CEL files
- Run
biotea prepare affymetrix path/to/dir myname.csv
- See that the resulting file is called
expression_data.csv instead of myname.csv
Expected behavior
The output file should have the correct name.
Desktop (please complete the following information):
- OS: Arch Linux
- BioTEA Version (Run
biotea info biotea): 2.0.0
- Docker engine version (Run
docker --version): 28.1.1, build 4eba377327
- BioTEA container version (if applicable): 2.0.0