alignstat format #47
Description
Hello
I am interested in using alignstat to compare various alignment algorithm
I tried the online version but it does not seem to work: fasta alignments are loaded but nothing happen afterward.
I also installed the r package but I get an error message....
I tried loading my alignment with phylotools::read.fasta or with ape but I still have this error:
Error in path.expand(file) : invalid 'path' argument
In addition: Warning messages:
1: In if (tools::file_ext(alignment) == "clustal" | tools::file_ext(alignment) == :
the condition has length > 1 and only the first element will be used
2: In if (tools::file_ext(alignment) == "msf" | tools::file_ext(alignment) == :
the condition has length > 1 and only the first element will be used
3: In if (tools::file_ext(alignment) == "mase" | tools::file_ext(alignment) == :
the condition has length > 1 and only the first element will be used
I tried with alignments in msa or fasta format...
class(myFirstAlignment)
[1] "MsaAAMultipleAlignment"
attr(,"package")
[1] "msa"
or with
ref_df=phylotools::read.fasta(ref)
class(ref_df)
[1] "data.frame"
any suggestions?