pepdiff/DESCRIPTION at master · TeamMacLean/pepdiff · GitHub

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Package: pepdiff
Type: Package
Title: Differential Abundance Analysis for Phosphoproteomics Data
Version: 1.0.0
Author: Dan MacLean [aut, cre]
Description: Provides tools for analyzing differential abundance in proteomics experiments. Implements S3
    classes for data management and supports GLM, ART, and pairwise test
    methods for statistical analysis. Includes visualization functions for
    PCA, volcano plots, and heatmaps.
Authors@R: person(given = "Dan", family = "MacLean", role = c("aut", "cre"), email = "dan.maclean@tsl.ac.uk")
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
biocViews:
Imports:
    dplyr,
    tidyr,
    tibble,
    rlang,
    readr,
    ggplot2,
    cowplot,
    emmeans,
    ARTool,
    stats,
    magrittr,
    stringr,
    forcats,
    grid
Suggests:
    ComplexHeatmap,
    UpSetR,
    RColorBrewer,
    viridis,
    circlize,
    factoextra,
    RankProd,
    MKinfer,
    testthat (>= 3.0.0),
    knitr,
    rmarkdown
Depends:
    R (>= 4.1.0)
VignetteBuilder: knitr
Config/testthat/edition: 3