Attempt to add favicon, fix up site navigation

Author: Charles Pletcher

08-tfidf.ipynb

@@ -46,23 +46,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "Collecting lxml\n",
-      "  Downloading lxml-5.3.1-cp313-cp313-manylinux_2_28_x86_64.whl.metadata (3.7 kB)\n",
-      "Downloading lxml-5.3.1-cp313-cp313-manylinux_2_28_x86_64.whl (5.0 MB)\n",
-      "\u001b[2K   \u001b[38;2;114;156;31m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m5.0/5.0 MB\u001b[0m \u001b[31m11.4 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m31m12.4 MB/s\u001b[0m eta \u001b[36m0:00:01\u001b[0m\n",
-      "\u001b[?25hInstalling collected packages: lxml\n",
-      "Successfully installed lxml-5.3.1\n",
-      "Note: you may need to restart the kernel to use updated packages.\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "%pip install lxml"
    ]
@@ -78,7 +64,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -101,7 +87,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -119,7 +105,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -143,24 +129,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "xml/tlg0012/tlg001/tlg0012.tlg001.perseus-eng3.xml\n",
-      "xml/tlg0012/tlg001/tlg0012.tlg001.perseus-eng4.xml\n",
-      "xml/tlg0012/tlg001/tlg0012.tlg001.perseus-grc2.xml\n",
-      "xml/tlg0012/tlg002/tlg0012.tlg002.perseus-eng3.xml\n",
-      "xml/tlg0012/tlg002/tlg0012.tlg002.perseus-eng4.xml\n",
-      "xml/tlg0012/tlg002/tlg0012.tlg002.perseus-grc2.xml\n",
-      "xml/tlg0012/tlg003/tlg0012.tlg003.perseus-eng1.xml\n",
-      "xml/tlg0012/tlg003/tlg0012.tlg003.perseus-grc1.xml\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "for file in files:\n",
     "    # print the name of the file as a sanity check\n",
@@ -222,36 +193,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "Collecting nltk\n",
-      "  Downloading nltk-3.9.1-py3-none-any.whl.metadata (2.9 kB)\n",
-      "Collecting click (from nltk)\n",
-      "  Downloading click-8.1.8-py3-none-any.whl.metadata (2.3 kB)\n",
-      "Collecting joblib (from nltk)\n",
-      "  Downloading joblib-1.4.2-py3-none-any.whl.metadata (5.4 kB)\n",
-      "Collecting regex>=2021.8.3 (from nltk)\n",
-      "  Downloading regex-2024.11.6-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (40 kB)\n",
-      "Collecting tqdm (from nltk)\n",
-      "  Downloading tqdm-4.67.1-py3-none-any.whl.metadata (57 kB)\n",
-      "Downloading nltk-3.9.1-py3-none-any.whl (1.5 MB)\n",
-      "\u001b[2K   \u001b[38;2;114;156;31m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m1.5/1.5 MB\u001b[0m \u001b[31m12.2 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n",
-      "\u001b[?25hDownloading regex-2024.11.6-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (796 kB)\n",
-      "\u001b[2K   \u001b[38;2;114;156;31m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m796.9/796.9 kB\u001b[0m \u001b[31m17.6 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n",
-      "\u001b[?25hDownloading click-8.1.8-py3-none-any.whl (98 kB)\n",
-      "Downloading joblib-1.4.2-py3-none-any.whl (301 kB)\n",
-      "Downloading tqdm-4.67.1-py3-none-any.whl (78 kB)\n",
-      "Installing collected packages: tqdm, regex, joblib, click, nltk\n",
-      "Successfully installed click-8.1.8 joblib-1.4.2 nltk-3.9.1 regex-2024.11.6 tqdm-4.67.1\n",
-      "Note: you may need to restart the kernel to use updated packages.\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "%pip install nltk"
    ]
@@ -267,31 +211,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "[nltk_data] Downloading package punkt to /home/charles/nltk_data...\n",
-      "[nltk_data]   Package punkt is already up-to-date!\n",
-      "[nltk_data] Downloading package punkt_tab to\n",
-      "[nltk_data]     /home/charles/nltk_data...\n",
-      "[nltk_data]   Unzipping tokenizers/punkt_tab.zip.\n"
-     ]
-    },
-    {
-     "data": {
-      "text/plain": [
-       "True"
-      ]
-     },
-     "execution_count": 13,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
+   "outputs": [],
    "source": [
     "import nltk\n",
     "\n",
@@ -313,20 +235,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 17,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "There are 200625 tokens in tlg0012.tlg001.perseus-eng3.txt.\n",
-      "There are 175611 tokens in tlg0012.tlg001.perseus-eng4.txt.\n",
-      "There are 152631 tokens in tlg0012.tlg002.perseus-eng3.txt.\n",
-      "There are 135463 tokens in tlg0012.tlg002.perseus-eng4.txt.\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "# Initialize the tokenizer\n",
     "from nltk.tokenize import word_tokenize\n",
@@ -372,7 +283,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 18,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -400,20 +311,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 19,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "128"
-      ]
-     },
-     "execution_count": 19,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
+   "outputs": [],
    "source": [
     "tokenized_texts[\"tlg0012.tlg001.perseus-eng3.txt\"][\"counts\"][\"odysseus\"]"
    ]
@@ -430,17 +330,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 29,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "0.0\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "df_achilles = 0\n",
     "df_odysseus = 0\n",
@@ -469,40 +361,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 32,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "In tlg0012.tlg001.perseus-eng3.txt:\n",
-      "TF of achilles: 0.002043613707165109\n",
-      "TF of odysseus: 0.000638006230529595\n",
-      "TF-IDF of achilles: 0.0\n",
-      "TF-IDF of odysseus: 0.0\n",
-      "\n",
-      "In tlg0012.tlg001.perseus-eng4.txt:\n",
-      "TF of achilles: 0.002403038534032606\n",
-      "TF of odysseus: 0.0007061061095261686\n",
-      "TF-IDF of achilles: 0.0\n",
-      "TF-IDF of odysseus: 0.0\n",
-      "\n",
-      "In tlg0012.tlg002.perseus-eng3.txt:\n",
-      "TF of achilles: 0.0001048279838302835\n",
-      "TF of odysseus: 0.0041603606082643765\n",
-      "TF-IDF of achilles: 0.0\n",
-      "TF-IDF of odysseus: 0.0\n",
-      "\n",
-      "In tlg0012.tlg002.perseus-eng4.txt:\n",
-      "TF of achilles: 0.0001254955227626732\n",
-      "TF of odysseus: 0.0042816119530794386\n",
-      "TF-IDF of achilles: 0.0\n",
-      "TF-IDF of odysseus: 0.0\n",
-      "\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "# Now let's calculate the TF-IDF \"score\" for each term in each document.\n",
     "\n",
@@ -559,20 +420,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 33,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "{1, 2, 3}"
-      ]
-     },
-     "execution_count": 33,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
+   "outputs": [],
    "source": [
     "my_list = [1, 1, 2, 3, 3]\n",
     "\n",
@@ -590,18 +440,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "2286"
-      ]
-     },
-     "execution_count": 37,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
+   "outputs": [],
    "source": [
     "non_universal_terms = {}\n",
     "\n",

README.md

@@ -1,6 +1,8 @@
-# Tufts University — Intro to Digital Humanities
+# Tufts Introduction to Digital Humanities — Course Site
 
-This is a work in progress. To get started, you can follow along with any of the notebooks, or you can open a notebook directly in a GitHub codespace.
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14805610.svg)](https://doi.org/10.5281/zenodo.14805610)
+
+This site was built using the tools made available by MyST Markdown. More information can be found at the link above.
 
 ## Licenses
 

index.md

@@ -0,0 +1,9 @@
+# Tufts University — Intro to Digital Humanities
+
+This is a work in progress. To get started, you can follow along with any of the notebooks, or you can open a notebook directly in a GitHub codespace.
+
+## Licenses
+
+All of the code in this repository is MIT-licensed.
+
+All else is licensed under CC-BY 4.0.

myst.yml

@@ -1,19 +1,16 @@
 # See docs at: https://mystmd.org/guide/frontmatter
 version: 1
 project:
-  id: cf58ebae-6a0e-4148-a15a-335cb48db8b2
-  # description:
-  # keywords: []
-  # authors: []
-  # github: https://github.com/jupyter-book/mystmd-quickstart
+  github: https://github.com/TuftsIntroDH/TuftsIntroDH.github.io/
   license: CC-BY-4.0
   open_access: true
   short_title: "Intro DH"
   title: "Tufts Intro DH"
   toc:
-    - file: README.md
+    - file: index.md
     - pattern: "*.ipynb"
 site:
   template: book-theme
+  favicon: public/favicon.ico
   options:
     logo_text: "Tufts Intro to DH"