From b0fcd70f44ce5c9e844d7e6fcc891997eb360642 Mon Sep 17 00:00:00 2001 From: Penelope Yong Date: Tue, 31 Mar 2026 17:12:00 +0100 Subject: [PATCH] update --- Manifest.toml | 293 ++++++++++++++++++++++++++------------------------ 1 file changed, 152 insertions(+), 141 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 4277df10d..66789937c 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -63,9 +63,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -226,9 +226,9 @@ version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "29bb0eb6f578a587a49da16564705968667f5fa8" +git-tree-sha1 = "b8651b2eb5796a386b0398a20b519a6a6150f75c" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "1.1.2" +version = "1.1.3" [deps.Atomix.extensions] AtomixCUDAExt = "CUDA" @@ -256,9 +256,9 @@ version = "0.4.8" [[deps.BangBang]] deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] -git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" +git-tree-sha1 = "cceb62468025be98d42a5dc581b163c20896b040" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.4.8" +version = "0.4.9" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -320,9 +320,9 @@ version = "0.1.6" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "d9b66401c1fa982c7ca984d0566af5a9b3551420" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" +version = "1.12.0" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -575,9 +575,9 @@ version = "1.8.1" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -601,10 +601,18 @@ uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" version = "0.1.2" [[deps.DelayDiffEq]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "FastBroadcast", "ForwardDiff", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "SymbolicIndexingInterface"] -git-tree-sha1 = "508151e101ee796201a4abd05506c6027213e967" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "FastBroadcast", "ForwardDiff", "LinearAlgebra", "Logging", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "SymbolicIndexingInterface"] +git-tree-sha1 = "398214a0318a2a02128603a26ad4ecd1ffa65115" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.69.0" +version = "5.70.0" + + [deps.DelayDiffEq.extensions] + DelayDiffEqStochasticDiffEqCoreExt = ["StochasticDiffEqCore", "DiffEqNoiseProcess", "Random"] + + [deps.DelayDiffEq.weakdeps] + DiffEqNoiseProcess = "77a26b50-5914-5dd7-bc55-306e6241c503" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + StochasticDiffEqCore = "19c5a474-6cd1-4a5f-be79-46dc34e54d7f" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -620,9 +628,9 @@ version = "0.4.0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "96e0d3006aac4a322691de81f0baedd38b62a0c4" +git-tree-sha1 = "c5fe5125fcba8f98cdc5c7221b6c324883899c07" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.211.0" +version = "6.213.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -800,10 +808,10 @@ uuid = "bbc10e6e-7c05-544b-b16e-64fede858acb" version = "3.6.0" [[deps.DynamicPPL]] -deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "PrecompileTools", "Printf", "Random", "Statistics", "Test"] -git-tree-sha1 = "14ded43f8a62568b17efc62d9f04491a2d4d8c9b" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "PrecompileTools", "Preferences", "Printf", "Random", "Statistics", "Test"] +git-tree-sha1 = "7255f9493bb497ddb13b1bf48564289688869755" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.40.14" +version = "0.40.18" [deps.DynamicPPL.extensions] DynamicPPLEnzymeCoreExt = ["EnzymeCore"] @@ -835,9 +843,9 @@ version = "1.0.7" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "03eda226219a3cf21cda8f7b56c5de7ab8c923a6" +git-tree-sha1 = "7383238b1524e0df25a98924c9070d0d231f5b8c" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.131" +version = "0.13.136" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -857,9 +865,9 @@ version = "0.13.131" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "24bbb6fc8fb87eb71c1f8d00184a60fc22c63903" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.19" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -868,9 +876,9 @@ weakdeps = ["Adapt", "ChainRulesCore"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "f9e4e3c5c543ba1bcafc103d680e57d95ce1a1cb" +git-tree-sha1 = "4c22000e08aaa862526d9a41cfb7003e4002e653" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.251+0" +version = "0.0.256+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1060,9 +1068,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1070,9 +1078,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1128,9 +1136,9 @@ version = "0.2.0" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "Tracy", "UUIDs"] -git-tree-sha1 = "966946d226e8b676ca6409454718accb18c34c54" +git-tree-sha1 = "fedfe5e7db7035271c3f58359007f971da1dde87" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "1.8.2" +version = "1.9.1" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] @@ -1377,9 +1385,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] -git-tree-sha1 = "fb14a863240d62fbf5922bf9f8803d7df6c62dc8" +git-tree-sha1 = "f2e76d3ced51a2a9e185abc0b97494c7273f649f" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.40" +version = "0.9.41" weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] @@ -1554,9 +1562,9 @@ version = "2.41.3+0" [[deps.Libtask]] deps = ["MistyClosures", "Test"] -git-tree-sha1 = "02dfe44e6115ecf1e55f3bc1be0df00d33901d4c" +git-tree-sha1 = "8a6ffa41b9c56aeb88c2962b12f35dd18ea2623f" uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.9.14" +version = "0.9.17" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1592,10 +1600,10 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "57a7bea58da7de6906f2621294ea35656cb40c5f" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "1ddad5f2b0717f71f1588b3519e2f7d80fc2ce65" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.66.0" +version = "3.69.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1606,6 +1614,7 @@ version = "3.66.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" @@ -1633,6 +1642,7 @@ version = "3.66.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" @@ -1782,9 +1792,9 @@ version = "1.5.3" [[deps.LuxLib]] deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "DispatchDoctor", "EnzymeCore", "FastClosures", "Functors", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Preferences", "Random", "Reexport", "SciMLPublic", "Static", "StaticArraysCore", "Statistics", "UUIDs"] -git-tree-sha1 = "d93ed9031e8609a63dcd7f158f8565f93a0ab61e" +git-tree-sha1 = "77f3257b18e9fedd39b7b7990f0d3a0800a834ae" uuid = "82251201-b29d-42c6-8e01-566dec8acb11" -version = "1.15.4" +version = "1.15.6" [deps.LuxLib.extensions] AppleAccelerateExt = "AppleAccelerate" @@ -1831,9 +1841,9 @@ version = "7.7.0" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "f90494689e927268dec7bbd1ece64f134ad251f4" +git-tree-sha1 = "2f464b68e84673727b4e4216a6254fba7da5cf4e" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.16" +version = "0.3.17" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] @@ -1849,9 +1859,9 @@ version = "1.0.0" [[deps.MLDataDevices]] deps = ["Adapt", "Functors", "Preferences", "Random", "SciMLPublic"] -git-tree-sha1 = "d8ab79840174b85db64214d4140d4be0a9270210" +git-tree-sha1 = "39a69ca451c3e78b9a6a2e42ef894fdf7505e629" uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" -version = "1.17.4" +version = "1.17.5" [deps.MLDataDevices.extensions] AMDGPUExt = "AMDGPU" @@ -1987,9 +1997,9 @@ version = "0.8.1" [[deps.Mooncake]] deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DispatchDoctor", "ExprTools", "Graphs", "LinearAlgebra", "MistyClosures", "PrecompileTools", "Random", "Test"] -git-tree-sha1 = "1236599308fd233ff4021c71cab859a0207164d7" +git-tree-sha1 = "450ff886563cdadbfb6c21efd3889aeece0d8f7d" uuid = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" -version = "0.5.23" +version = "0.5.24" [deps.Mooncake.extensions] MooncakeAllocCheckExt = "AllocCheck" @@ -2002,8 +2012,9 @@ version = "0.5.23" MooncakeJETExt = "JET" MooncakeLogExpFunctionsExt = "LogExpFunctions" MooncakeLuxLibExt = ["LuxLib", "MLDataDevices", "Static"] + MooncakeLuxLibNNlibExt = ["LuxLib", "NNlib"] MooncakeLuxLibSLEEFPiratesExtension = ["LuxLib", "SLEEFPirates"] - MooncakeNNlibExt = ["NNlib", "GPUArraysCore", "LinearAlgebra"] + MooncakeNNlibExt = ["NNlib", "LinearAlgebra"] MooncakeSpecialFunctionsExt = "SpecialFunctions" MooncakecuDNNExt = ["CUDA", "cuDNN"] @@ -2158,10 +2169,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "4f595a0977d6e048fa1e3c382b088b950f8c7934" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a89529d343dbb09670a24df090787dc3475fba5d" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.15.0" +version = "2.19.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -2358,27 +2369,27 @@ version = "1.8.1" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "924e1db15095c7df6b844231c00c40d756a7553d" +git-tree-sha1 = "621790374f3945db30f871313c131e5b9c956f63" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.108.0" +version = "6.109.0" [[deps.OrdinaryDiffEqAdamsBashforthMoulton]] deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "8307937159c3aeec5f19f4b661d82d96d25a3ff1" +git-tree-sha1 = "79f756d4a593a99ab47c8a8ee72061e7d60cd9c0" uuid = "89bda076-bce5-4f1c-845f-551c83cdda9a" -version = "1.9.0" +version = "1.10.0" [[deps.OrdinaryDiffEqBDF]] deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "22b0c4f7939af140b7f7f4ce2cce90d9f72fa515" +git-tree-sha1 = "4758206b7578c8f884915ad589e6bd18548e16f3" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.22.0" +version = "1.23.0" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", 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"PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "211530a7dc76ab59087f4d4d1fc3f086fbe87594" +git-tree-sha1 = "624de6279ab7d94fc9f672f0068107eb6619732c" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "3.2.3" +version = "3.3.2" [deps.PrettyTables.extensions] PrettyTablesTypstryExt = "Typstry" @@ -2821,9 +2832,9 @@ weakdeps = ["FixedPointNumbers"] [[deps.ReactantCore]] deps = ["ExpressionExplorer", "MacroTools"] -git-tree-sha1 = "f40fa78679f0d5584f6b83abed10e78c34d8bd9d" +git-tree-sha1 = "5b9e0fe7fb2cf3794fd96ac32bf2732aa4bb9776" uuid = "a3311ec8-5e00-46d5-b541-4f83e724a433" -version = "0.1.17" +version = "0.1.19" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -2845,9 +2856,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "76a9c4d3f7b256dd34074e714ffe0ced8d3d21de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "3.50.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2920,9 +2931,9 @@ version = "0.5.1+0" [[deps.Roots]] deps = ["Accessors", "CommonSolve", "Printf"] -git-tree-sha1 = "10a488dbecb88a9679c8f357d383d7d83dcc748d" +git-tree-sha1 = "b2f70f34eb9973572d55c332933c6a04c911f549" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.2.13" +version = "2.2.14" [deps.Roots.extensions] RootsChainRulesCoreExt = "ChainRulesCore" @@ -2963,9 +2974,9 @@ version = "0.6.1" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "0be0208add9b6836a701e0ac3ad30bda72fee51d" +git-tree-sha1 = "bdbc7c751d36fdb104d437361950d884d489af85" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.150.0" +version = "2.153.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -3040,9 +3051,9 @@ version = "1.0.1" [[deps.SciMLSensitivity]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "Enzyme", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEqCore", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLStructures", "SparseArrays", "StaticArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tracker", "Zygote"] -git-tree-sha1 = "06508b66e7cbef5d15d53dbe5d05c4ad97df1f11" +git-tree-sha1 = "d94f224a2e7d5a7a5cc6a0abb64323fcf8076fb1" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.99.0" +version = "7.100.0" [deps.SciMLSensitivity.extensions] SciMLSensitivityMooncakeExt = "Mooncake" @@ -3173,9 +3184,9 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "fa43a02c01e3e3cb065c89bf9b648b89e3c06f18" +git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.25" +version = "0.4.26" [deps.SparseMatrixColorings.extensions] SparseMatrixColoringsCUDAExt = "CUDA" @@ -3192,9 +3203,9 @@ version = "0.4.25" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -3346,9 +3357,9 @@ version = "0.4.4" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] [deps.StructArrays.extensions] @@ -3365,9 +3376,9 @@ version = "0.3.1" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "b4075a491f3cb24e3beea0c192959292f80e1ad8" +git-tree-sha1 = "fa95b3b097bcef5845c142ea2e085f1b2591e92c" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.7.0" +version = "2.7.1" [deps.StructUtils.extensions] StructUtilsMeasurementsExt = ["Measurements"] @@ -3555,9 +3566,9 @@ version = "1.6.0" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "DifferentiationInterface", "Distributions", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "05e4dd6cfcaaa38e423c054a82aa3a43abd9a5b3" +git-tree-sha1 = "d2acfbc45409aca79f673ade98ecfbae2a7d3c79" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.43.2" +version = "0.43.3" weakdeps = ["DynamicHMC"] [deps.Turing.extensions] @@ -3584,9 +3595,9 @@ uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" [[deps.UnsafeAtomics]] -git-tree-sha1 = "b13c4edda90890e5b04ba24e20a310fbe6f249ff" +git-tree-sha1 = "0f30765c32d66d58e41f4cb5624d4fc8a82ec13b" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.3.0" +version = "0.3.1" weakdeps = ["LLVM"] [deps.UnsafeAtomics.extensions] @@ -3898,9 +3909,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e2a7072fc0cdd7949528c1455a3e5da4122e1153" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.56+0" [[deps.libva_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"]