From 2f109f624188c3581f52f40046e4b6661170bad8 Mon Sep 17 00:00:00 2001 From: liningping <728359849@qq.com> Date: Wed, 25 Jun 2025 06:56:32 +0000 Subject: [PATCH 1/2] =?UTF-8?q?feat:=E6=96=B0=E5=A2=9Esci=5Fdoc=5Fparsing?= =?UTF-8?q?=20=E6=B5=8B=E8=AF=95=E8=84=9A=E6=9C=AC?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- README.md | 15 + compose.yaml | 119 ++++++++ proto/common/v1/s3.proto | 7 + proto/parse/v1/pdf_parser.proto | 44 +++ pyproject.toml | 6 +- src/__init__.py | 0 src/message/common/v1/s3_pb2.py | 36 +++ src/message/common/v1/s3_pb2_grpc.py | 24 ++ src/message/parse/v1/pdf_parser_pb2.py | 47 +++ src/message/parse/v1/pdf_parser_pb2_grpc.py | 24 ++ tests/test_doc_parsing.py | 58 ++++ tests/utils.py | 36 +++ uv.lock | 321 ++++++++++++++++++++ 13 files changed, 736 insertions(+), 1 deletion(-) create mode 100644 compose.yaml create mode 100644 proto/common/v1/s3.proto create mode 100644 proto/parse/v1/pdf_parser.proto create mode 100644 src/__init__.py create mode 100644 src/message/common/v1/s3_pb2.py create mode 100644 src/message/common/v1/s3_pb2_grpc.py create mode 100644 src/message/parse/v1/pdf_parser_pb2.py create mode 100644 src/message/parse/v1/pdf_parser_pb2_grpc.py create mode 100644 tests/test_doc_parsing.py create mode 100644 tests/utils.py diff --git a/README.md b/README.md index b20add1..8ec70af 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,17 @@ # TriModalParser +## 添加依赖 +``` +pip imstall uv +``` +``` +uv pip install . +``` +## 测试doc_parsing +1. 如果src没有message文件,那么请使用如下命令进行proto编译 +``` +python -m grpc_tools.protoc -Iproto --python_out=src/message --grpc_python_out=src/message proto/common/v1/s3.proto +python -m grpc_tools.protoc -Iproto --python_out=src/message --grpc_python_out=src/message proto/parse/v1/pdf_parser.proto +``` +2. 运行tests/utils.py 上传需要解析的文件到s3，这一步需要保留key值 +3. 运行tests/test_doc_parsing.py, 修改main函数中send_task函数的参数，将任务推入队列中，等待任务完成结果输出 \ No newline at end of file diff --git a/compose.yaml b/compose.yaml new file mode 100644 index 0000000..d5b3fc3 --- /dev/null +++ b/compose.yaml @@ -0,0 +1,119 @@ +name: sci-assistant + +services: + minio: + image: minio/minio:${MINIO_IMAGE_TAG:-RELEASE.2025-04-08T15-41-24Z} + restart: always + ports: + - "9000:9000" + - "9002:9001" + healthcheck: + test: mc ready local + interval: 10s + timeout: 10s + retries: 3 + command: server --console-address ":9001" + environment: + MINIO_ROOT_USER: ${MINIO_ACCESS_KEY:-minio} + MINIO_ROOT_PASSWORD: ${MINIO_SECRET_KEY:-minio123} + MINIO_VOLUMES: /data + MINIO_PROMETHEUS_AUTH_TYPE: public + volumes: + - ./minio/data:/data + + minio-init-bucket: + image: minio/mc:${MC_IMAGE_TAG:-RELEASE.2025-04-08T15-39-49Z} + command: mb -p minio/${MINIO_BUCKET:-sci-assistant} + environment: + MC_HOST_minio: http://${MINIO_ACCESS_KEY:-minio}:${MINIO_SECRET_KEY:-minio123}@minio:9000 + depends_on: + minio: + condition: service_healthy + + rabbitmq: + image: rabbitmq:${RABBITMQ_IMAGE_TAG:-4.1-management} + restart: always + healthcheck: + test: rabbitmq-diagnostics check_port_connectivity + interval: 10s + timeout: 3s + retries: 3 + ports: + - "5671:5672" + - "15671:15672" + volumes: + - ./rabbitmq/definitions.json:/etc/rabbitmq/definitions.json:ro + - ./rabbitmq/conf.d:/etc/rabbitmq/conf.d:ro + - ./rabbitmq/data:/var/lib/rabbitmq + + + mysql: + image: mysql:${MYSQL_IMAGE_TAG:-8.4} + restart: always + healthcheck: + test: mysqladmin ping -h localhost -u $$MYSQL_USER --password=$$MYSQL_PASSWORD + interval: 10s + timeout: 5s + retries: 3 + command: + --character-set-server=utf8mb4 + --collation-server=utf8mb4_general_ci + environment: + MYSQL_ROOT_PASSWORD: ${MYSQL_ROOT_PASSWORD:-sci-1234} + MYSQL_USER: ${MYSQL_USER:-sci-assistant} + MYSQL_PASSWORD: ${MYSQL_PASSWORD:-sci-1234} + MYSQL_DATABASE: ${MYSQL_DATABASE:-sci-assistant} + TZ: Asia/Shanghai + volumes: + - ./mysql/initdb.d:/docker-entrypoint-initdb.d:ro + - ./mysql/data:/var/lib/mysql + + redis: + image: redis:${REDIS_IMAGE_TAG:-7.4} + restart: always + healthcheck: + test: | + if [ -z "$$REDIS_PASSWORD" ]; then + redis-cli ping | grep PONG + else + redis-cli -a $$REDIS_PASSWORD ping | grep PONG + fi + interval: 10s + timeout: 1s + retries: 3 + command: + --requirepass "${REDIS_PASSWORD:-}" + environment: + REDIS_PASSWORD: ${REDIS_PASSWORD:-} + + sci-assistant-docparsing: + image: git.kclab.cloud/sci-agent/sci-assistant-docparsing:${DOCPARSING_IMAGE_TAG:-0.0.5} + devices: + - "nvidia.com/gpu=7" + environment: + # MQ Configuration + AMQP_URI: amqp://sci-assistant:sci-1234@rabbitmq:5672/%2F?heartbeat=60 + # Queue Names + PARSING_INPUT_QUEUE: PARSINGINPUT + PARSING_OUTPUT_QUEUE: PARSINGOUTPUT + # Concurrency Control + MAX_PARSING_CONCURRENCY: ${MAX_PARSING_CONCURRENCY:-1} + # S3 Configuration + S3_ENDPOINT: http://minio:9000 + S3_ACCESS_KEY: ${MINIO_ACCESS_KEY:-minio} + S3_SECRET_KEY: ${MINIO_SECRET_KEY:-minio123} + S3_BUCKET_NAME: ${MINIO_BUCKET:-sci-assistant} + S3_REGION_NAME: us-east-1 + S3_ADDRESSING_STYLE: auto + # allocation size (MiB) + PARSING_ALLOCATION_SIZE: ${PARSING_ALLOCATION_SIZE:-10000} + PARSING_ALLOCATION_SCALE: ${PARSING_ALLOCATION_SCALE:-0.85} + depends_on: + rabbitmq: + condition: service_healthy + minio: + condition: service_healthy + minio-init-bucket: + condition: service_completed_successfully + profiles: + - disable_until_fixed \ No newline at end of file diff --git a/proto/common/v1/s3.proto b/proto/common/v1/s3.proto new file mode 100644 index 0000000..d30b79d --- /dev/null +++ b/proto/common/v1/s3.proto @@ -0,0 +1,7 @@ +syntax = "proto3"; + +package common.v1; + +message S3File { + string key = 1 ; +} diff --git a/proto/parse/v1/pdf_parser.proto b/proto/parse/v1/pdf_parser.proto new file mode 100644 index 0000000..3fcfd23 --- /dev/null +++ b/proto/parse/v1/pdf_parser.proto @@ -0,0 +1,44 @@ +syntax = "proto3"; + +package parse.v1; + +import "common/v1/s3.proto"; + + +message PDFCover { + uint32 page_num = 1 ; + repeated double bbox = 2 ; +} + +message PDFSegment { + enum SegmentType { + TYPE_UNSPECIFIED = 0; + TYPE_TEXT = 1; + TYPE_IMAGE = 2; + TYPE_FORMULA = 3; // 特指单行公式 + TYPE_TABLE = 4; + } + string chapter_name = 1 ; // 图片不存在 chapter name + string id = 2 ; + SegmentType type = 3 ; + string content = 4 ; // 图片的这个部分为空，表格为解析版 + common.v1.S3File image = 5 ; // 图片格式数据 + repeated PDFCover covers = 6 ; + repeated string related_segment_ids = 7 ; + string reference_id = 8 ; // 图片和表格具有该字段 + string caption = 9 ; // 图片和表格具有该字段 +} + +message PDFMetadata { + string title = 1 ; +} + +message PDFParserInput { + common.v1.S3File file = 1 ; +} + +message PDFParserOutput { + common.v1.S3File file = 1 ; + PDFMetadata metadata = 2 ; + repeated PDFSegment segments = 3 ; +} diff --git a/pyproject.toml b/pyproject.toml index b04b9b1..34d6945 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,7 +4,11 @@ version = "0.1.0" description = "Add your description here" readme = "README.md" requires-python = ">=3.12" -dependencies = [] +dependencies = [ + "aio-pika>=9.5.5", + "grpcio-tools>=1.73.0", + "protobuf>=6.31.1", +] [dependency-groups] bandit = [ diff --git a/src/__init__.py b/src/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/src/message/common/v1/s3_pb2.py b/src/message/common/v1/s3_pb2.py new file mode 100644 index 0000000..11b8d05 --- /dev/null +++ b/src/message/common/v1/s3_pb2.py @@ -0,0 +1,36 @@ +# -*- coding: utf-8 -*- +# Generated by the protocol buffer compiler. DO NOT EDIT! +# NO CHECKED-IN PROTOBUF GENCODE +# source: common/v1/s3.proto +# Protobuf Python Version: 6.31.0 +"""Generated protocol buffer code.""" +from google.protobuf import descriptor as _descriptor +from google.protobuf import descriptor_pool as _descriptor_pool +from google.protobuf import runtime_version as _runtime_version +from google.protobuf import symbol_database as _symbol_database +from google.protobuf.internal import builder as _builder +_runtime_version.ValidateProtobufRuntimeVersion( + _runtime_version.Domain.PUBLIC, + 6, + 31, + 0, + '', + 'common/v1/s3.proto' +) +# @@protoc_insertion_point(imports) + +_sym_db = _symbol_database.Default() + + + + +DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n\x12\x63ommon/v1/s3.proto\x12\tcommon.v1\"\x15\n\x06S3File\x12\x0b\n\x03key\x18\x01 \x01(\tb\x06proto3') + +_globals = globals() +_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals) +_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'common.v1.s3_pb2', _globals) +if not _descriptor._USE_C_DESCRIPTORS: + DESCRIPTOR._loaded_options = None + _globals['_S3FILE']._serialized_start=33 + _globals['_S3FILE']._serialized_end=54 +# @@protoc_insertion_point(module_scope) diff --git a/src/message/common/v1/s3_pb2_grpc.py b/src/message/common/v1/s3_pb2_grpc.py new file mode 100644 index 0000000..9ae4eae --- /dev/null +++ b/src/message/common/v1/s3_pb2_grpc.py @@ -0,0 +1,24 @@ +# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT! +"""Client and server classes corresponding to protobuf-defined services.""" +import grpc +import warnings + + +GRPC_GENERATED_VERSION = '1.73.0' +GRPC_VERSION = grpc.__version__ +_version_not_supported = False + +try: + from grpc._utilities import first_version_is_lower + _version_not_supported = first_version_is_lower(GRPC_VERSION, GRPC_GENERATED_VERSION) +except ImportError: + _version_not_supported = True + +if _version_not_supported: + raise RuntimeError( + f'The grpc package installed is at version {GRPC_VERSION},' + + f' but the generated code in common/v1/s3_pb2_grpc.py depends on' + + f' grpcio>={GRPC_GENERATED_VERSION}.' + + f' Please upgrade your grpc module to grpcio>={GRPC_GENERATED_VERSION}' + + f' or downgrade your generated code using grpcio-tools<={GRPC_VERSION}.' + ) diff --git a/src/message/parse/v1/pdf_parser_pb2.py b/src/message/parse/v1/pdf_parser_pb2.py new file mode 100644 index 0000000..243e71e --- /dev/null +++ b/src/message/parse/v1/pdf_parser_pb2.py @@ -0,0 +1,47 @@ +# -*- coding: utf-8 -*- +# Generated by the protocol buffer compiler. DO NOT EDIT! +# NO CHECKED-IN PROTOBUF GENCODE +# source: parse/v1/pdf_parser.proto +# Protobuf Python Version: 6.31.0 +"""Generated protocol buffer code.""" +from google.protobuf import descriptor as _descriptor +from google.protobuf import descriptor_pool as _descriptor_pool +from google.protobuf import runtime_version as _runtime_version +from google.protobuf import symbol_database as _symbol_database +from google.protobuf.internal import builder as _builder +_runtime_version.ValidateProtobufRuntimeVersion( + _runtime_version.Domain.PUBLIC, + 6, + 31, + 0, + '', + 'parse/v1/pdf_parser.proto' +) +# @@protoc_insertion_point(imports) + +_sym_db = _symbol_database.Default() + + +from src.message.common.v1 import s3_pb2 as common_dot_v1_dot_s3__pb2 + + +DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n\x19parse/v1/pdf_parser.proto\x12\x08parse.v1\x1a\x12\x63ommon/v1/s3.proto\"*\n\x08PDFCover\x12\x10\n\x08page_num\x18\x01 \x01(\r\x12\x0c\n\x04\x62\x62ox\x18\x02 \x03(\x01\"\xdf\x02\n\nPDFSegment\x12\x14\n\x0c\x63hapter_name\x18\x01 \x01(\t\x12\n\n\x02id\x18\x02 \x01(\t\x12.\n\x04type\x18\x03 \x01(\x0e\x32 .parse.v1.PDFSegment.SegmentType\x12\x0f\n\x07\x63ontent\x18\x04 \x01(\t\x12 \n\x05image\x18\x05 \x01(\x0b\x32\x11.common.v1.S3File\x12\"\n\x06\x63overs\x18\x06 \x03(\x0b\x32\x12.parse.v1.PDFCover\x12\x1b\n\x13related_segment_ids\x18\x07 \x03(\t\x12\x14\n\x0creference_id\x18\x08 \x01(\t\x12\x0f\n\x07\x63\x61ption\x18\t \x01(\t\"d\n\x0bSegmentType\x12\x14\n\x10TYPE_UNSPECIFIED\x10\x00\x12\r\n\tTYPE_TEXT\x10\x01\x12\x0e\n\nTYPE_IMAGE\x10\x02\x12\x10\n\x0cTYPE_FORMULA\x10\x03\x12\x0e\n\nTYPE_TABLE\x10\x04\"\x1c\n\x0bPDFMetadata\x12\r\n\x05title\x18\x01 \x01(\t\"1\n\x0ePDFParserInput\x12\x1f\n\x04\x66ile\x18\x01 \x01(\x0b\x32\x11.common.v1.S3File\"\x83\x01\n\x0fPDFParserOutput\x12\x1f\n\x04\x66ile\x18\x01 \x01(\x0b\x32\x11.common.v1.S3File\x12\'\n\x08metadata\x18\x02 \x01(\x0b\x32\x15.parse.v1.PDFMetadata\x12&\n\x08segments\x18\x03 \x03(\x0b\x32\x14.parse.v1.PDFSegmentb\x06proto3') + +_globals = globals() +_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals) +_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'parse.v1.pdf_parser_pb2', _globals) +if not _descriptor._USE_C_DESCRIPTORS: + DESCRIPTOR._loaded_options = None + _globals['_PDFCOVER']._serialized_start=59 + _globals['_PDFCOVER']._serialized_end=101 + _globals['_PDFSEGMENT']._serialized_start=104 + _globals['_PDFSEGMENT']._serialized_end=455 + _globals['_PDFSEGMENT_SEGMENTTYPE']._serialized_start=355 + _globals['_PDFSEGMENT_SEGMENTTYPE']._serialized_end=455 + _globals['_PDFMETADATA']._serialized_start=457 + _globals['_PDFMETADATA']._serialized_end=485 + _globals['_PDFPARSERINPUT']._serialized_start=487 + _globals['_PDFPARSERINPUT']._serialized_end=536 + _globals['_PDFPARSEROUTPUT']._serialized_start=539 + _globals['_PDFPARSEROUTPUT']._serialized_end=670 +# @@protoc_insertion_point(module_scope) diff --git a/src/message/parse/v1/pdf_parser_pb2_grpc.py b/src/message/parse/v1/pdf_parser_pb2_grpc.py new file mode 100644 index 0000000..247d58c --- /dev/null +++ b/src/message/parse/v1/pdf_parser_pb2_grpc.py @@ -0,0 +1,24 @@ +# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT! +"""Client and server classes corresponding to protobuf-defined services.""" +import grpc +import warnings + + +GRPC_GENERATED_VERSION = '1.73.0' +GRPC_VERSION = grpc.__version__ +_version_not_supported = False + +try: + from grpc._utilities import first_version_is_lower + _version_not_supported = first_version_is_lower(GRPC_VERSION, GRPC_GENERATED_VERSION) +except ImportError: + _version_not_supported = True + +if _version_not_supported: + raise RuntimeError( + f'The grpc package installed is at version {GRPC_VERSION},' + + f' but the generated code in parse/v1/pdf_parser_pb2_grpc.py depends on' + + f' grpcio>={GRPC_GENERATED_VERSION}.' + + f' Please upgrade your grpc module to grpcio>={GRPC_GENERATED_VERSION}' + + f' or downgrade your generated code using grpcio-tools<={GRPC_VERSION}.' + ) diff --git a/tests/test_doc_parsing.py b/tests/test_doc_parsing.py new file mode 100644 index 0000000..09db215 --- /dev/null +++ b/tests/test_doc_parsing.py @@ -0,0 +1,58 @@ +import asyncio +import aio_pika +from aio_pika import Message, IncomingMessage +from src.message.parse.v1.pdf_parser_pb2 import PDFParserInput, PDFParserOutput +from src.message.common.v1.s3_pb2 import S3File +import logging +logging.basicConfig(level=logging.INFO) + +AMQP_URI = "amqp://sci-assistant:sci-1234@localhost:5671/%2F?heartbeat=60" +INPUT_QUEUE = "PARSINGINPUT" +OUTPUT_QUEUE = "PARSINGOUTPUT" + + +async def send_task(channel, s3_key: str): + message = PDFParserInput() + message.file.CopyFrom(S3File(key=s3_key)) + body = message.SerializeToString() + + await channel.default_exchange.publish( + Message(body=body, content_type="application/x-protobuf"), + routing_key=INPUT_QUEUE + ) + print(f"[SEND] Sent PDFParserInput with key: {s3_key}") + + +async def on_result(message: IncomingMessage): + async with message.process(): + output = PDFParserOutput() + output.ParseFromString(message.body) + + print(f"\n[RECEIVED] Output file key: {output.file.key}") + print(f"Title: {output.metadata.title}") + print(f"Segments ({len(output.segments)}):") + for seg in output.segments[:5]: # 打印前5个 + print(f" ID: {seg.id}, Type: {seg.type}, Content: {seg.content[:100]}, Images: {seg.image}") + + +async def main(): + connection = await aio_pika.connect_robust(AMQP_URI) + channel = await connection.channel() + + # 开始监听输出队列 + await channel.set_qos(prefetch_count=10) + await channel.declare_queue(OUTPUT_QUEUE, durable=True) + await channel.declare_queue(INPUT_QUEUE, durable=True) + + queue = await channel.declare_queue(OUTPUT_QUEUE, durable=True) + await queue.consume(on_result) + + # 发送任务（替换成你需要解析的 PDF 文件 key） + await send_task(channel, "my-uploaded-file.pdf") + + print(" [*] 等待解析结果。按 Ctrl+C 退出") + await asyncio.Future() + + +if __name__ == "__main__": + asyncio.run(main()) diff --git a/tests/utils.py b/tests/utils.py new file mode 100644 index 0000000..8f34982 --- /dev/null +++ b/tests/utils.py @@ -0,0 +1,36 @@ +import boto3 +from botocore.client import Config + +# MinIO 配置 +endpoint_url = "http://localhost:9000" +access_key = "minio" +secret_key = "minio123" +bucket_name = "sci-assistant" +object_name = "my-uploaded-file.pdf" +file_path = "/home/lnp/Multimodal-Analysis/dataflow.drawio.pdf" + +# 创建 S3 客户端 +s3 = boto3.client( + "s3", + endpoint_url=endpoint_url, + aws_access_key_id=access_key, + aws_secret_access_key=secret_key, + config=Config(signature_version="s3v4"), + region_name="us-east-1" +) + +try: + # 上传文件 + s3.upload_file(file_path, bucket_name, object_name) + print(f"✅ 上传成功: {object_name}") + + # 生成预签名 URL（有效期 1 小时） + presigned_url = s3.generate_presigned_url( + "get_object", + Params={"Bucket": bucket_name, "Key": object_name}, + ExpiresIn=3600 # 有效期（秒） + ) + print(f"🔗 预签名下载链接（1小时有效）:\n{presigned_url}") + +except Exception as e: + print(f"❌ 上传失败: {e}") diff --git a/uv.lock b/uv.lock index 929a9fa..c7466f0 100644 --- a/uv.lock +++ b/uv.lock @@ -2,6 +2,33 @@ version = 1 revision = 2 requires-python = ">=3.12" +[[package]] +name = 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install . ``` ## 测试doc_parsing -1. 如果src没有message文件,那么请使用如下命令进行proto编译 +1. 如果src没有message文件夹,那么请使用如下命令进行proto编译 ``` python -m grpc_tools.protoc -Iproto --python_out=src/message --grpc_python_out=src/message proto/common/v1/s3.proto python -m grpc_tools.protoc -Iproto --python_out=src/message --grpc_python_out=src/message proto/parse/v1/pdf_parser.proto ``` 2. 运行tests/utils.py 上传需要解析的文件到s3，这一步需要保留key值 -3. 运行tests/test_doc_parsing.py, 修改main函数中send_task函数的参数，将任务推入队列中，等待任务完成结果输出 \ No newline at end of file +3. 运行tests/test_doc_parsing.py, 修改main函数中send_task函数的参数，将任务推入队列中，等待任务完成结果输出