GNPS_ExternalStructureProxy/docker-compose.yml at master · Wang-Bioinformatics-Lab/GNPS_ExternalStructureProxy · GitHub

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version: '3'

services:
  externalstructureproxy-web:
    build: .
    container_name: externalstructureproxy-web
    volumes:
      - ./output:/output:rw
      - ./data:/app/data:ro
      - ./database:/app/database:ro
      - ./logs:/app/logs:rw
    networks:
      - default
    restart: always
    ports:
      - "5010:5000"
    command: /app/run_server.sh
    deploy:
      resources:
        limits:
          memory: 8G
    logging:
      driver: "json-file"
      options:
        max-size: "10m"
        max-file: "3"

  externalstructureproxy-library_generation_worker:
    build: .
    container_name: externalstructureproxy-library_generation_worker
    volumes:
        - ./output:/output:rw
        - ./pipelines:/app/pipelines:rw
        - /home/user/LabData/data/GNPS_Library_Provenance/GNPS_Library_Provenance:/home/user/LabData/data/GNPS_Library_Provenance/GNPS_Library_Provenance:ro
        - ./gscratch:/data/gscratch:rw
    networks:
      - default
    restart: always
    command: /app/run_library_generation_worker.sh
    depends_on:
      - externalstructureproxy-rabbitmq
    deploy:
      resources:
        limits:
          memory: 64G  # TODO: Scope this back now that harmonization has been moved out
    logging:
      driver: "json-file"
      options:
        max-size: "10m"
        max-file: "3"

  externalstructureproxy-library_harmonization_worker:
    build: .
    container_name: externalstructureproxy-library_harmonization_worker
    volumes:
        - ./output:/output:rw
        - ./pipelines:/app/pipelines:rw
        - /home/user/LabData/data/GNPS_Library_Provenance/GNPS_Library_Provenance:/home/user/LabData/data/GNPS_Library_Provenance/GNPS_Library_Provenance:ro
        - ./gscratch:/data/gscratch:rw
    networks:
      - default
    restart: always
    command: /app/run_library_harmonization_worker.sh
    depends_on:
      - externalstructureproxy-rabbitmq
    deploy:
      resources:
        limits:
          memory: 76G
          cpus: "8"
    logging:
      driver: "json-file"
      options:
        max-size: "10m"
        max-file: "3"

  externalstructureproxy-api_request_worker:
    build: .
    container_name: externalstructureproxy-api_request_worker
    volumes:
        - ./output:/output:rw
        - ./internal-outputs/:/internal-outputs:rw
        - ./gscratch:/data/gscratch:rw
    networks:
      - default
    restart: always
    command: /app/run_api_request_worker.sh
    depends_on:
      - externalstructureproxy-rabbitmq
    deploy:
      resources:
        limits:
          memory: 8G
    logging:
      driver: "json-file"
      options:
        max-size: "10m"
        max-file: "3"


  externalstructureproxy-library_api_retrieve_worker:
    build: .
    container_name: externalstructureproxy-library_api_retrieve_worker
    volumes:
        - ./output:/output:rw
        - ./data:/app/data:ro
        - ./database:/app/database:rw
        - ./gscratch:/data/gscratch:rw
    networks:
      - default
    restart: always
    command: /app/run_library_api_retrieve_worker.sh
    depends_on:
      - externalstructureproxy-rabbitmq
    deploy:
      resources:
        limits:
          memory: 8G
    logging:
      driver: "json-file"
      options:
        max-size: "10m"
        max-file: "3"

  externalstructureproxy-rabbitmq:
    image: rabbitmq:latest
    container_name: externalstructureproxy-rabbitmq
    networks:
      - default
    restart: always
    volumes:
      - ./rabbitmq_advanced.config:/etc/rabbitmq/advanced.config:ro
    deploy:
      resources:
        limits:
          memory: 8G
    logging:
      driver: "json-file"
      options:
        max-size: "10m"
        max-file: "3"

  externalstructureproxy-redis:
    image: redis:latest
    container_name: externalstructureproxy-redis
    volumes:
    - ./redis.conf:/usr/local/etc/redis/redis.conf
    networks:
      - default
    restart: always
    command: redis-server /usr/local/etc/redis/redis.conf
    deploy:
      resources:
        limits:
          memory: 8G
    logging:
      driver: "json-file"
      options:
        max-size: "10m"
        max-file: "3"

networks:
  nginx-net:
    external:
      name: nginx-net