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Traits and Visualize can't be run with just annotate #473

@madeline-scyphers

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@madeline-scyphers

Description of the bug

When running traits with just annotate, we run into a use-before-definition error where ch_final_annots is only defined if you run --summarize or with the --annotations [path/to/annotations.tsv]. We just need to define it after the ANNOTATE` step.

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beta19

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