midtools/pyproject.toml at master · acorg/midtools · GitHub

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[build-system]
requires = ["setuptools>=61"]
build-backend = "setuptools.build_meta"

[project]
name = "midtools"
version = "1.2.2"
description = "Command line scripts and Python classes for detecting multiple infections from NGS reads."
readme = "README.md"
license = "MIT"
requires-python = ">=3.10"
authors = [
    {name = "Terry Jones", email = "tcj25@cam.ac.uk"},
]
keywords = ["genetic sequences"]
classifiers = [
    "Programming Language :: Python :: 2.7",
    "Programming Language :: Python :: 3.5",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Development Status :: 4 - Beta",
    "Intended Audience :: Developers",
    "Operating System :: OS Independent",
    "Topic :: Software Development :: Libraries :: Python Modules",
]
dependencies = [
    "colorlover>=0.3.0",
    "dark-matter>=7.1.18",
    "plotly>=6.6.0",
]

[project.urls]
Homepage = "https://github.com/acorg/midtools"

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools]
script-files = [
    "bin/base-frequencies.py",
    "bin/connected-components.py",
    "bin/consistency-basic.py",
    "bin/consistency-heatmap.py",
    "bin/coverage-and-significant-locations.py",
    "bin/create-mid-experiment-data.py",
    "bin/create-reads.py",
    "bin/mid-cluster.py",
    "bin/multiple-significant-base-frequencies.py",
    "bin/mutate-reads.py",
    "bin/plot-reads-against-all-references.py",
    "bin/random-nt-sequence.py",
    "bin/significant-base-frequencies.py",
    "bin/simulation-significant-base-frequencies.sh",
]

[dependency-groups]
dev = [
    "nox>=2026.2.9",
    "pytest>=9.0.2",
]