From 4f7daef0e702dab6596331a06eda4aad49991853 Mon Sep 17 00:00:00 2001 From: Andrew Teschendorff Date: Tue, 21 Jun 2022 08:54:46 +0800 Subject: [PATCH 1/2] Update README.md --- README.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 1fcf56e..262f88a 100644 --- a/README.md +++ b/README.md @@ -18,10 +18,11 @@ EpiSCORE is an R-package for constructing a tissue-specific DNA methylation refe # Installation -To install: +To install (you will also need to install the dependency package presto): ```r library(devtools) +devtools::install_github("immunogenomics/presto") devtools::install_github("aet21/EpiSCORE") ``` @@ -29,4 +30,4 @@ devtools::install_github("aet21/EpiSCORE") Teschendorff AE, Zhu T, Breeze CE, Beck S. EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data. Genome Biology 2020 Sep 4;21(1):221. doi: 10.1186/s13059-020-02126-9 . -Zhu T, Liu J, Beck S, Pan S, Capper D, Lechner M, Thirlwell C, Breeze CE, Teschendorff AE. A pan-tissue DNA methylation atlas enables in silico decomposition of human tissue methylomes at cell-type resolution. Nat Methods 2022 Mar;19(3):296. doi: 10.1038/s41592-022-01412-7 . \ No newline at end of file +Zhu T, Liu J, Beck S, Pan S, Capper D, Lechner M, Thirlwell C, Breeze CE, Teschendorff AE. A pan-tissue DNA methylation atlas enables in silico decomposition of human tissue methylomes at cell-type resolution. Nat Methods 2022 Mar;19(3):296. doi: 10.1038/s41592-022-01412-7 . From 6949c04c7742449faaca5cdc92086dc6eee727e3 Mon Sep 17 00:00:00 2001 From: hsiao yi Date: Fri, 18 Aug 2023 10:19:22 -0400 Subject: [PATCH 2/2] update installation method described in README.md --- README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.md b/README.md index 262f88a..f48d9e5 100644 --- a/README.md +++ b/README.md @@ -23,6 +23,9 @@ To install (you will also need to install the dependency package presto): ```r library(devtools) devtools::install_github("immunogenomics/presto") +if (!require("BiocManager", quietly = TRUE)) + install.packages("BiocManager") +BiocManager::install("org.hs.eg.db") devtools::install_github("aet21/EpiSCORE") ```