How to calculate of SR from sr.o? And the object 'ccat.v' cannot be found.

[TangentDeng]

Hi, great package! Thanks for reply my last issue.

In the document, "Because the calculation of SR takes a couple of minutes, we use the precomputed values stored in the vector srChu.v which is part of dataChu. We can now check if SR discriminates hESCs from the multipotent progenitor endothelial cells:"
But how to calculate SR from sr.o? The sr.o$SR did not have a barcode.

Another issue:
ccat.v <- CompCCAT(exp = lscChu.m, ppiA = net17Jan16.m)
Error in CompCCAT(exp = lscChu0.m, ppiA = net17Jan16.m)
the object 'ccat.v' cannot be found.

[nickhir]

Hi,

I am not the developer, but I think I might have an idea what causes the ccat.v cannot be found error. I have created a pull request #6 to fix the bug. Essentially the error is caused because your lscChu.m is probably of class dgeMatrix.
To fix this you can either install the my SCNET version (devtools::install_github("nickhir/SCENT")) or more simply try to run ccat.v <- CompCCAT(exp = as.matrix(lscChu.m), ppiA = net17Jan16.m)