From 91c80da26fb12fd737c14e20f0f5577d1c11925a Mon Sep 17 00:00:00 2001 From: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com> Date: Mon, 20 Apr 2026 03:41:46 +0000 Subject: [PATCH 01/23] stage-c: enforce YAML frontmatter on all Markdown files - tools/frontmatter_audit.py: new scanner with --list / --verify / --add. Deterministically infers tags + register from each file's path; skips UTF-16/binary files and .git/.pytest_cache/node_modules paths. - .github/workflows/frontmatter-enforcement.yml: CI job that runs 'python tools/frontmatter_audit.py --verify' on every PR and push to main that touches markdown or the scanner itself. - tests/test_frontmatter_audit.py: unit tests for detection, inference, injection, UTF-16 skip, list/verify commands (13 cases). - Backfill: prepend '--- tags: [...] register: ---' to 260 remaining markdown files (the other ~460 were already backfilled by prior sessions or this session). After this commit every tracked non-exempt *.md file begins with a frontmatter block. - STANDARDS_REGISTRY.json: fix pre-existing duplicate total_standards key that left the file as invalid JSON; register CS-008 'Every Markdown file must begin with a YAML frontmatter block'. total_standards now reflects the true count (47). - consent_log entry claude-20260420-stage-c-yaml-frontmatter-backfill appended before any code change. Co-Authored-By: Tony Ha --- .github/copilot-instructions.md | 5 + .github/workflows/frontmatter-enforcement.yml | 34 + ABSOLUTE_GIT_SYNC_PROOF.md | 5 + AGENT.md | 5 + AGENT_FEED.md | 5 + AGENT_IN_IDE.md | 767 +- AI_INSTRUCTIONS.md | 5 + AI_INTERACTION_CONTRACT.md | 5 + AI_PLAYBOOK.md | 5 + ARCHITECTURE_SORA_PIPELINE.md | 5 + ARXIV_IMPLEMENTATION_STATUS.md | 5 + ATOMIC_COMPLETION_SUMMARY.md | 5 + ATOMIC_INSTRUCTIONS_COMPLETE_SUMMARY.md | 5 + ATOMIC_INVARIANT_COMPLETION_SUMMARY.md | 5 + ATOMIC_METAPHYSICAL_DISCOVERY_COMPLETION.md | 5 + AUTOFIX_IMPLEMENTATION_SUMMARY.md | 5 + AUTONOMOUS_PR18_EXPLORER_README.md | 5 + CANONICALIZATION_IMPLEMENTATION_SUMMARY.md | 5 + CHANGELOG.md | 5 + CHANGELOG_v0.3.0.md | 305 +- COMPLETE_GOVERNANCE_STACK_SUMMARY.md | 5 + COMPONENT_INTERFACES.md | 5 + COMPREHENSIVE_FAILURE_ANALYSIS.md | 5 + COMPREHENSIVE_FIX_SUMMARY.md | 5 + CONTRIBUTING.md | 5 + COPILOT_ONBOARDING.md | 5 + CORRESPONDENCE_FRAMEWORK.md | 5 + CURRENT_CAPABILITIES.md | 5 + DATA_FILESYSTEM.md | 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OE_AI_PIPELINE_REPORT.md | 5 + OE_ATOMIC_INSTRUCTIONS_CANONICAL.md | 5 + OE_CLOUD_REPORT.md | 5 + OE_CLOUD_REPORT_DOWNLOADS.md | 5 + OE_DFM_IMPLEMENTATION_SUMMARY.md | 5 + OE_DFM_QUICK_START.md | 5 + OE_GIT_SYNC.md | 5 + OE_TOOL_COMPENDIUM.md | 5 + ONBOARDING_FOR_AI_AGENTS.md | 5 + ONBOARD_FIRST.md | 5 + ONTOLOGICAL_PRECEDENTS.md | 5 + PHASE2_DEPLOYMENT_COMPLETION_REPORT.md | 5 + PHASE3_DEPLOYMENT_COMPLETION_REPORT.md | 5 + PHASE_10_IMPLEMENTATION_COMPLETION_SUMMARY.md | 5 + PHASE_11_COMPLETION_SUMMARY.md | 5 + PHASE_12_COMPLETION_SUMMARY.md | 5 + PHASE_2_COMPLETION_SUMMARY.md | 5 + PHASE_3_ATOMICITY_FIX_COMPLETE.md | 5 + PHASE_4_COMPLETION_REPORT.md | 5 + PHASE_4_COMPLETION_SUMMARY.md | 5 + PHASE_4_IMPLEMENTATION_SUMMARY.md | 5 + PHASE_5_COMPLETION_REPORT.md | 5 + PHASE_5_IMPLEMENTATION_SUMMARY.md | 5 + ..._ATOMIC_WORKFLOW_IMPLEMENTATION_SUMMARY.md | 5 + PHASE_8_COMPLETION_SUMMARY.md | 5 + PHASE_9_HTML_GENERATION_SUMMARY.md | 5 + PII_CANON_ENFORCEMENT.md | 5 + PIPELINE_WORKS_PROOF.md 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transcripts/chatgpt_session_2026.md | 5 + transcripts/deepseek_session_2026.md | 5 + transcripts/gemini_session_2026.md | 5 + workflows/README_PHASE9_WORKFLOWS.md | 5 + yeshua_math/yeshua_standards.md | 5 + ...241\306\222\303\204\302\273_START_HERE.md" | 5 + 717 files changed, 56471 insertions(+), 50583 deletions(-) create mode 100644 .github/workflows/frontmatter-enforcement.yml create mode 100644 tests/test_frontmatter_audit.py create mode 100644 tools/frontmatter_audit.py diff --git a/.github/copilot-instructions.md b/.github/copilot-instructions.md index 30fa6365..67c41233 100644 --- a/.github/copilot-instructions.md +++ b/.github/copilot-instructions.md @@ -1,3 +1,8 @@ +--- +tags: [github, copilot-instructions] +register: governance +--- + # Copilot Agent Instructions You are a **software engineering agent**, not a warden. You have full write access to this repository. diff --git a/.github/workflows/frontmatter-enforcement.yml b/.github/workflows/frontmatter-enforcement.yml new file mode 100644 index 00000000..6e1c173c --- /dev/null +++ b/.github/workflows/frontmatter-enforcement.yml @@ -0,0 +1,34 @@ +name: Frontmatter Enforcement + +on: + pull_request: + paths: + - "**/*.md" + - "tools/frontmatter_audit.py" + - ".github/workflows/frontmatter-enforcement.yml" + push: + branches: + - main + paths: + - "**/*.md" + - "tools/frontmatter_audit.py" + - ".github/workflows/frontmatter-enforcement.yml" + +jobs: + frontmatter-audit: + name: YAML frontmatter audit + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v4 + with: + fetch-depth: 1 + + - name: Set up Python 3.12 + uses: actions/setup-python@v5 + with: + python-version: "3.12" + + - name: Verify every Markdown file has frontmatter + run: | + python tools/frontmatter_audit.py --verify diff --git a/ABSOLUTE_GIT_SYNC_PROOF.md b/ABSOLUTE_GIT_SYNC_PROOF.md index effaa7a7..b0aed727 100644 --- a/ABSOLUTE_GIT_SYNC_PROOF.md +++ b/ABSOLUTE_GIT_SYNC_PROOF.md @@ -1,3 +1,8 @@ +--- +tags: [absolute-git-sync-proof] +register: documentation +--- + # ABSOLUTE GIT SYNCHRONIZATION PROOF ## Cryptographic Verification of Phase 12 Repository State diff --git a/AGENT.md b/AGENT.md index 2bebbde4..482bfd0b 100644 --- a/AGENT.md +++ b/AGENT.md @@ -1,3 +1,8 @@ +--- +tags: [agent] +register: documentation +--- + # AGENT.md - Orthogonal Engineering Glass-Box Boundary Agent **Version:** 1.11 diff --git a/AGENT_FEED.md b/AGENT_FEED.md index 50ddd332..aa763145 100644 --- a/AGENT_FEED.md +++ b/AGENT_FEED.md @@ -1,3 +1,8 @@ +--- +tags: [agent-feed] +register: documentation +--- + diff --git a/AGENT_IN_IDE.md b/AGENT_IN_IDE.md index a5e0a5e5..832e58bf 100644 --- a/AGENT_IN_IDE.md +++ b/AGENT_IN_IDE.md @@ -1,381 +1,386 @@ -# Agent-in-IDE Integration Profile - -**How Orthogonal Engineering applies to AI agents operating inside IDEs (like Cursor)** - -## Overview - -This document defines how the Orthogonal Engineering methodology maps to the **causal loop** of an IDE-integrated AI agent, making the methodology **machine-actionable** rather than just descriptive. - -**Reference profile, not a mandate:** Platforms and agents can adopt, adapt, or subset this profile; it is meant as a reference design, not a normative standard. - ---- - -## The Agent Loop - -### Formal State Machine - -``` -idle → planning → executing → validating → complete - ↓ ↓ - failed ←────┘ -``` - -**States:** -- **idle**: Waiting for user input -- **planning**: Analyzing user intent, selecting canals/invariants -- **executing**: Performing tool calls (edit_file, grep, run_test, etc.) -- **validating**: Checking invariants (lints, tests, user constraints) -- **complete**: All invariants pass, task done -- **failed**: Invariant violation detected, mitigation needed - -See `ontology/orthogonal_ontology.json` for formal schema. - ---- - -## Layer Mapping: LLM Output → IDE Agent Actions - -### Layer 0: Input Canal (Pre-Generation) - -**In LLM context:** Shape the prompt before generation. - -**In IDE agent context:** -- Extract **user constraints** from query -- Identify **required invariants** (no new lints, tests pass, etc.) -- Select **canal templates** (regex patterns, AST transforms, schema validators) - -**Example:** -```python -# Agent receives: "Fix the bug in user_controller.py" -# Pre-processing (Layer 0): -constraints = { - "no_new_lints": True, - "tests_pass": True, - "preserve_existing_api": True -} -canal = select_canal("bug_fix", constraints) -``` - -### Layer 1: Raw Output - -**In LLM context:** Verbose, drift-filled response. - -**In IDE agent context:** -- **Tool call outputs** (file contents, grep results, test outputs) -- **May contain drift:** irrelevant files, false positives, noise - -**Example:** -```python -# Agent reads file, gets: -file_content = """ -# ... actual code ... -# TODO: fix this later -# ... more code ... -""" -# Drift: TODO comments, unrelated code sections -``` - -### Layer 2: Post-Processing & Extraction - -**In LLM context:** Extract `[INVARIANT]` tags. - -**In IDE agent context:** -- Extract **structural invariants** from tool outputs -- Apply **canal patterns** (regex, AST, schema validation) -- Route **drift** (irrelevant files, noise) away from analysis - -**Example:** -```python -# Extract only function definitions (invariant) -import ast -tree = ast.parse(file_content) -functions = [node for node in ast.walk(tree) if isinstance(node, ast.FunctionDef)] -# Drift (comments, TODOs) routed away -``` - -### Layer 3: Raised Fields (Templates & Structure) - -**In LLM context:** Structured output templates. - -**In IDE agent context:** -- **Type-checked edits** (Pydantic models, TypeScript types) -- **Schema-validated outputs** (JSON schemas, GraphQL) -- **Test-driven structure** (tests define expected shape) - -**Example:** -```python -from pydantic import BaseModel - -class EditAction(BaseModel): - file: str - line_start: int - line_end: int - replacement: str - - @validator('replacement') - def validate_syntax(cls, v): - # Canal: syntax errors routed away - compile(v, '', 'exec') - return v -``` - -### Layer 4: Iterative Refinement - -**In LLM context:** Use extracted invariant as seed for next query. - -**In IDE agent context:** -- **Validation loop:** Edit → Check invariants → If fail, refine -- **Evidence accumulation:** Each step builds causal trace -- **Failure recovery:** Detect failure mode → Apply mitigation → Retry - ---- - -## Required Invariants (Always Check) - -After **every** edit action, agent must check: - -### 1. No New Lints (`no_new_lints`) - -**Invariant:** No new syntax or style errors introduced. - -**Check:** -```python -def check_no_new_lints(file_path: str) -> Evidence: - before = read_lints(file_path) # Before edit - # ... perform edit ... - after = read_lints(file_path) # After edit - - new_errors = set(after) - set(before) - return Evidence( - invariant_id="no_new_lints", - result="pass" if len(new_errors) == 0 else "fail", - details=new_errors - ) -``` - -**Mitigation if fail:** Rollback edit, add constraints, ask user. - -### 2. Tests Pass (`tests_pass`) - -**Invariant:** Existing functionality preserved. - -**Check:** -```python -def check_tests_pass() -> Evidence: - result = run_tests() - return Evidence( - invariant_id="tests_pass", - result="pass" if result.exit_code == 0 else "fail", - details=result.output - ) -``` - -**Mitigation if fail:** Rollback, add tests, ask user. - -### 3. User Constraints Met (`user_constraints`) - -**Invariant:** User-stated requirements preserved. - -**Check:** -```python -def check_user_constraints(user_query: str, edit: EditAction) -> Evidence: - # Extract constraints from query - constraints = extract_constraints(user_query) - # Validate edit meets constraints - met = all(constraint.validate(edit) for constraint in constraints) - return Evidence( - invariant_id="user_constraints", - result="pass" if met else "fail" - ) -``` - -**Mitigation if fail:** Refine edit, ask for clarification. - ---- - -## Evidence Schema (Causal Trace) - -Every agent action must produce an **Evidence** object: - -```json -{ - "action_id": "uuid", - "timestamp": "2026-01-19T01:00:00Z", - "action_type": "edit_file", - "inputs": { - "file": "user_controller.py", - "user_query": "Fix the bug", - "prior_state": {...} - }, - "assumptions": [ - "Bug is in authentication logic", - "No API changes needed" - ], - "transformation": { - "canal_id": "bug_fix_canal", - "invariant_id": "no_new_lints", - "pattern": "regex_replace" - }, - "invariants_checked": [ - { - "invariant_id": "no_new_lints", - "check_type": "read_lints", - "result": "pass" - }, - { - "invariant_id": "tests_pass", - "check_type": "run_tests", - "result": "pass" - } - ], - "outputs": { - "file_edited": "user_controller.py", - "lines_changed": [45, 46] - }, - "outcome": "success" -} -``` - -**Why this matters:** The entire agent session becomes a **causal trace**, not just a chat log. Every answer can be explained: "I did X because Y, checked Z, and got result R." - ---- - -## Failure Mode Detection & Mitigation - -Map `FAILURES.md` to **runtime guards**: - -### Example: "Hallucinated Code" - -**Detection:** -```python -def detect_hallucination(edit: EditAction) -> bool: - # Check if referenced functions exist - for func_call in extract_function_calls(edit.replacement): - if not function_exists(func_call): - return True # Hallucination detected - return False -``` - -**Mitigation Policy:** -```python -if detect_hallucination(edit): - mitigation = { - "action": "ask_user", - "parameters": { - "message": "Referenced function not found. Should I create it?" - } - } -``` - ---- - -## Canal Templates for IDE Agents - -### 1. Regex-Based Canal (Simple Extraction) - -```python -def extract_invariant_regex(content: str, pattern: str) -> str: - match = re.search(pattern, content, re.DOTALL) - return match.group(1).strip() if match else None - -# Usage: -code_block = extract_invariant_regex( - llm_output, - r'```python\n(.*?)\n```' -) -``` - -### 2. AST-Based Canal (Structural Extraction) - -```python -import ast - -def extract_functions_ast(content: str) -> List[ast.FunctionDef]: - tree = ast.parse(content) - return [node for node in ast.walk(tree) - if isinstance(node, ast.FunctionDef)] -``` - -### 3. Schema-Based Canal (Type-Safe Extraction) - -```python -from pydantic import BaseModel, validator - -class CodeEdit(BaseModel): - file: str - replacement: str - - @validator('replacement') - def validate_syntax(cls, v): - compile(v, '', 'exec') - return v -``` - ---- - -## Integration Checklist - -For an IDE agent to be "truly legit" under Orthogonal Engineering: - -- [ ] **Formal ontology** implemented (`ontology/orthogonal_ontology.json`) -- [ ] **Evidence logging** for every action -- [ ] **Invariant checks** after every edit (lints, tests, constraints) -- [ ] **Failure mode detection** with mitigation policies -- [ ] **Canal templates** for common extraction patterns -- [ ] **State machine** enforcement (idle → planning → executing → validating) -- [ ] **Causal trace** generation (full Evidence chain) - ---- - -## Example: Complete Agent Loop - -```python -# 1. User query -user_query = "Fix the bug in user_controller.py" - -# 2. Planning (Layer 0) -constraints = extract_constraints(user_query) -canal = select_canal("bug_fix", constraints) -plan = create_plan(user_query, canal) - -# 3. Executing -evidence_chain = [] -for action in plan: - # Perform action - result = execute_action(action) - - # Check invariants (Layer 2) - evidence = Evidence( - action_id=action.id, - invariants_checked=[ - check_no_new_lints(action.file), - check_tests_pass(), - check_user_constraints(user_query, action) - ] - ) - evidence_chain.append(evidence) - - # If invariant violation, apply mitigation - if not all(e.result == "pass" for e in evidence.invariants_checked): - mitigation = detect_failure_mode(evidence) - apply_mitigation(mitigation) - # Retry or ask user - -# 4. Complete -return { - "outcome": "success", - "evidence_chain": evidence_chain, - "causal_explanation": generate_explanation(evidence_chain) -} -``` - ---- - -## Next Steps - -1. **Implement ontology** in agent codebase -2. **Add evidence logging** to all tool calls -3. **Wire invariant checks** into edit actions -4. **Test failure modes** and mitigation policies -5. **Generate causal traces** for user queries - -See `ontology/orthogonal_ontology.json` for formal schema definitions. +--- +tags: [agent-in-ide] +register: documentation +--- + +# Agent-in-IDE Integration Profile + +**How Orthogonal Engineering applies to AI agents operating inside IDEs (like Cursor)** + +## Overview + +This document defines how the Orthogonal Engineering methodology maps to the **causal loop** of an IDE-integrated AI agent, making the methodology **machine-actionable** rather than just descriptive. + +**Reference profile, not a mandate:** Platforms and agents can adopt, adapt, or subset this profile; it is meant as a reference design, not a normative standard. + +--- + +## The Agent Loop + +### Formal State Machine + +``` +idle → planning → executing → validating → complete + ↓ ↓ + failed ←────┘ +``` + +**States:** +- **idle**: Waiting for user input +- **planning**: Analyzing user intent, selecting canals/invariants +- **executing**: Performing tool calls (edit_file, grep, run_test, etc.) +- **validating**: Checking invariants (lints, tests, user constraints) +- **complete**: All invariants pass, task done +- **failed**: Invariant violation detected, mitigation needed + +See `ontology/orthogonal_ontology.json` for formal schema. + +--- + +## Layer Mapping: LLM Output → IDE Agent Actions + +### Layer 0: Input Canal (Pre-Generation) + +**In LLM context:** Shape the prompt before generation. + +**In IDE agent context:** +- Extract **user constraints** from query +- Identify **required invariants** (no new lints, tests pass, etc.) +- Select **canal templates** (regex patterns, AST transforms, schema validators) + +**Example:** +```python +# Agent receives: "Fix the bug in user_controller.py" +# Pre-processing (Layer 0): +constraints = { + "no_new_lints": True, + "tests_pass": True, + "preserve_existing_api": True +} +canal = select_canal("bug_fix", constraints) +``` + +### Layer 1: Raw Output + +**In LLM context:** Verbose, drift-filled response. + +**In IDE agent context:** +- **Tool call outputs** (file contents, grep results, test outputs) +- **May contain drift:** irrelevant files, false positives, noise + +**Example:** +```python +# Agent reads file, gets: +file_content = """ +# ... actual code ... +# TODO: fix this later +# ... more code ... +""" +# Drift: TODO comments, unrelated code sections +``` + +### Layer 2: Post-Processing & Extraction + +**In LLM context:** Extract `[INVARIANT]` tags. + +**In IDE agent context:** +- Extract **structural invariants** from tool outputs +- Apply **canal patterns** (regex, AST, schema validation) +- Route **drift** (irrelevant files, noise) away from analysis + +**Example:** +```python +# Extract only function definitions (invariant) +import ast +tree = ast.parse(file_content) +functions = [node for node in ast.walk(tree) if isinstance(node, ast.FunctionDef)] +# Drift (comments, TODOs) routed away +``` + +### Layer 3: Raised Fields (Templates & Structure) + +**In LLM context:** Structured output templates. + +**In IDE agent context:** +- **Type-checked edits** (Pydantic models, TypeScript types) +- **Schema-validated outputs** (JSON schemas, GraphQL) +- **Test-driven structure** (tests define expected shape) + +**Example:** +```python +from pydantic import BaseModel + +class EditAction(BaseModel): + file: str + line_start: int + line_end: int + replacement: str + + @validator('replacement') + def validate_syntax(cls, v): + # Canal: syntax errors routed away + compile(v, '', 'exec') + return v +``` + +### Layer 4: Iterative Refinement + +**In LLM context:** Use extracted invariant as seed for next query. + +**In IDE agent context:** +- **Validation loop:** Edit → Check invariants → If fail, refine +- **Evidence accumulation:** Each step builds causal trace +- **Failure recovery:** Detect failure mode → Apply mitigation → Retry + +--- + +## Required Invariants (Always Check) + +After **every** edit action, agent must check: + +### 1. No New Lints (`no_new_lints`) + +**Invariant:** No new syntax or style errors introduced. + +**Check:** +```python +def check_no_new_lints(file_path: str) -> Evidence: + before = read_lints(file_path) # Before edit + # ... perform edit ... + after = read_lints(file_path) # After edit + + new_errors = set(after) - set(before) + return Evidence( + invariant_id="no_new_lints", + result="pass" if len(new_errors) == 0 else "fail", + details=new_errors + ) +``` + +**Mitigation if fail:** Rollback edit, add constraints, ask user. + +### 2. Tests Pass (`tests_pass`) + +**Invariant:** Existing functionality preserved. + +**Check:** +```python +def check_tests_pass() -> Evidence: + result = run_tests() + return Evidence( + invariant_id="tests_pass", + result="pass" if result.exit_code == 0 else "fail", + details=result.output + ) +``` + +**Mitigation if fail:** Rollback, add tests, ask user. + +### 3. User Constraints Met (`user_constraints`) + +**Invariant:** User-stated requirements preserved. + +**Check:** +```python +def check_user_constraints(user_query: str, edit: EditAction) -> Evidence: + # Extract constraints from query + constraints = extract_constraints(user_query) + # Validate edit meets constraints + met = all(constraint.validate(edit) for constraint in constraints) + return Evidence( + invariant_id="user_constraints", + result="pass" if met else "fail" + ) +``` + +**Mitigation if fail:** Refine edit, ask for clarification. + +--- + +## Evidence Schema (Causal Trace) + +Every agent action must produce an **Evidence** object: + +```json +{ + "action_id": "uuid", + "timestamp": "2026-01-19T01:00:00Z", + "action_type": "edit_file", + "inputs": { + "file": "user_controller.py", + "user_query": "Fix the bug", + "prior_state": {...} + }, + "assumptions": [ + "Bug is in authentication logic", + "No API changes needed" + ], + "transformation": { + "canal_id": "bug_fix_canal", + "invariant_id": "no_new_lints", + "pattern": "regex_replace" + }, + "invariants_checked": [ + { + "invariant_id": "no_new_lints", + "check_type": "read_lints", + "result": "pass" + }, + { + "invariant_id": "tests_pass", + "check_type": "run_tests", + "result": "pass" + } + ], + "outputs": { + "file_edited": "user_controller.py", + "lines_changed": [45, 46] + }, + "outcome": "success" +} +``` + +**Why this matters:** The entire agent session becomes a **causal trace**, not just a chat log. Every answer can be explained: "I did X because Y, checked Z, and got result R." + +--- + +## Failure Mode Detection & Mitigation + +Map `FAILURES.md` to **runtime guards**: + +### Example: "Hallucinated Code" + +**Detection:** +```python +def detect_hallucination(edit: EditAction) -> bool: + # Check if referenced functions exist + for func_call in extract_function_calls(edit.replacement): + if not function_exists(func_call): + return True # Hallucination detected + return False +``` + +**Mitigation Policy:** +```python +if detect_hallucination(edit): + mitigation = { + "action": "ask_user", + "parameters": { + "message": "Referenced function not found. Should I create it?" + } + } +``` + +--- + +## Canal Templates for IDE Agents + +### 1. Regex-Based Canal (Simple Extraction) + +```python +def extract_invariant_regex(content: str, pattern: str) -> str: + match = re.search(pattern, content, re.DOTALL) + return match.group(1).strip() if match else None + +# Usage: +code_block = extract_invariant_regex( + llm_output, + r'```python\n(.*?)\n```' +) +``` + +### 2. AST-Based Canal (Structural Extraction) + +```python +import ast + +def extract_functions_ast(content: str) -> List[ast.FunctionDef]: + tree = ast.parse(content) + return [node for node in ast.walk(tree) + if isinstance(node, ast.FunctionDef)] +``` + +### 3. Schema-Based Canal (Type-Safe Extraction) + +```python +from pydantic import BaseModel, validator + +class CodeEdit(BaseModel): + file: str + replacement: str + + @validator('replacement') + def validate_syntax(cls, v): + compile(v, '', 'exec') + return v +``` + +--- + +## Integration Checklist + +For an IDE agent to be "truly legit" under Orthogonal Engineering: + +- [ ] **Formal ontology** implemented (`ontology/orthogonal_ontology.json`) +- [ ] **Evidence logging** for every action +- [ ] **Invariant checks** after every edit (lints, tests, constraints) +- [ ] **Failure mode detection** with mitigation policies +- [ ] **Canal templates** for common extraction patterns +- [ ] **State machine** enforcement (idle → planning → executing → validating) +- [ ] **Causal trace** generation (full Evidence chain) + +--- + +## Example: Complete Agent Loop + +```python +# 1. User query +user_query = "Fix the bug in user_controller.py" + +# 2. Planning (Layer 0) +constraints = extract_constraints(user_query) +canal = select_canal("bug_fix", constraints) +plan = create_plan(user_query, canal) + +# 3. Executing +evidence_chain = [] +for action in plan: + # Perform action + result = execute_action(action) + + # Check invariants (Layer 2) + evidence = Evidence( + action_id=action.id, + invariants_checked=[ + check_no_new_lints(action.file), + check_tests_pass(), + check_user_constraints(user_query, action) + ] + ) + evidence_chain.append(evidence) + + # If invariant violation, apply mitigation + if not all(e.result == "pass" for e in evidence.invariants_checked): + mitigation = detect_failure_mode(evidence) + apply_mitigation(mitigation) + # Retry or ask user + +# 4. Complete +return { + "outcome": "success", + "evidence_chain": evidence_chain, + "causal_explanation": generate_explanation(evidence_chain) +} +``` + +--- + +## Next Steps + +1. **Implement ontology** in agent codebase +2. **Add evidence logging** to all tool calls +3. **Wire invariant checks** into edit actions +4. **Test failure modes** and mitigation policies +5. **Generate causal traces** for user queries + +See `ontology/orthogonal_ontology.json` for formal schema definitions. diff --git a/AI_INSTRUCTIONS.md b/AI_INSTRUCTIONS.md index 83166ff9..fef1834e 100644 --- a/AI_INSTRUCTIONS.md +++ b/AI_INSTRUCTIONS.md @@ -1,3 +1,8 @@ +--- +tags: [ai-instructions] +register: documentation +--- + # AI_INSTRUCTIONS.md - Orthogonal Engineering Glass-Box Boundary AI Guidance **Version:** 1.13 diff --git a/AI_INTERACTION_CONTRACT.md b/AI_INTERACTION_CONTRACT.md index 867504f9..ade08405 100644 --- a/AI_INTERACTION_CONTRACT.md +++ b/AI_INTERACTION_CONTRACT.md @@ -1,3 +1,8 @@ +--- +tags: [ai-interaction-contract] +register: documentation +--- + # AI INTERACTION CONTRACT - ORTHOGONAL ENGINEERING GLASS-BOX BOUNDARY **Version:** 1.0 diff --git a/AI_PLAYBOOK.md b/AI_PLAYBOOK.md index 1d3de7c0..da835b30 100644 --- a/AI_PLAYBOOK.md +++ b/AI_PLAYBOOK.md @@ -1,3 +1,8 @@ +--- +tags: [ai-playbook] +register: documentation +--- + # AI_PLAYBOOK.md # ================ # Session-level guidance for AI agents working in this repository. diff --git a/ARCHITECTURE_SORA_PIPELINE.md b/ARCHITECTURE_SORA_PIPELINE.md index 3adfaedf..a52c60f4 100644 --- a/ARCHITECTURE_SORA_PIPELINE.md +++ b/ARCHITECTURE_SORA_PIPELINE.md @@ -1,3 +1,8 @@ +--- +tags: [architecture-sora-pipeline] +register: documentation +--- + # IDE-ORCHESTRATED SORA PIPELINE ARCHITECTURE ## Orthogonal Engineering Glass-Box Boundary Compliant System diff --git a/ARXIV_IMPLEMENTATION_STATUS.md b/ARXIV_IMPLEMENTATION_STATUS.md index 387466c9..f51af488 100644 --- a/ARXIV_IMPLEMENTATION_STATUS.md +++ b/ARXIV_IMPLEMENTATION_STATUS.md @@ -1,3 +1,8 @@ +--- +tags: [arxiv-implementation-status] +register: documentation +--- + # arXiv Implementation Status Generated: 2026-04-14T01:21:27Z diff --git a/ATOMIC_COMPLETION_SUMMARY.md b/ATOMIC_COMPLETION_SUMMARY.md index 060bc98e..c84af16d 100644 --- a/ATOMIC_COMPLETION_SUMMARY.md +++ b/ATOMIC_COMPLETION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [atomic-completion-summary] +register: documentation +--- + # ORTHOGONAL ENGINEERING - ATOMIC COMPLETION SUMMARY ## 🎯 MISSION ACCOMPLISHED: GLASS BOX METHODOLOGY IMPLEMENTED diff --git a/ATOMIC_INSTRUCTIONS_COMPLETE_SUMMARY.md b/ATOMIC_INSTRUCTIONS_COMPLETE_SUMMARY.md index 311e48e8..842852b1 100644 --- a/ATOMIC_INSTRUCTIONS_COMPLETE_SUMMARY.md +++ b/ATOMIC_INSTRUCTIONS_COMPLETE_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [atomic-instructions-complete-summary] +register: documentation +--- + # ATOMIC INSTRUCTIONS COMPLETE IMPLEMENTATION SUMMARY **File:** `ATOMIC_INSTRUCTIONS_COMPLETE_SUMMARY.md` diff --git a/ATOMIC_INVARIANT_COMPLETION_SUMMARY.md b/ATOMIC_INVARIANT_COMPLETION_SUMMARY.md index f950dcbf..ec4f061c 100644 --- a/ATOMIC_INVARIANT_COMPLETION_SUMMARY.md +++ b/ATOMIC_INVARIANT_COMPLETION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [atomic-invariant-completion-summary] +register: documentation +--- + # ATOMIC INVARIANT INSTRUCTION COMPLETION SUMMARY **Execution Date:** 2026-01-20 diff --git a/ATOMIC_METAPHYSICAL_DISCOVERY_COMPLETION.md b/ATOMIC_METAPHYSICAL_DISCOVERY_COMPLETION.md index 701a78e9..1eb4d38b 100644 --- a/ATOMIC_METAPHYSICAL_DISCOVERY_COMPLETION.md +++ b/ATOMIC_METAPHYSICAL_DISCOVERY_COMPLETION.md @@ -1,3 +1,8 @@ +--- +tags: [atomic-metaphysical-discovery-completion] +register: documentation +--- + # ATOMIC METAPHYSICAL DISCOVERY COMPLETION **File:** `ATOMIC_METAPHYSICAL_DISCOVERY_COMPLETION.md` diff --git a/AUTOFIX_IMPLEMENTATION_SUMMARY.md b/AUTOFIX_IMPLEMENTATION_SUMMARY.md index 2b755945..ee99ff23 100644 --- a/AUTOFIX_IMPLEMENTATION_SUMMARY.md +++ b/AUTOFIX_IMPLEMENTATION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [autofix-implementation-summary] +register: documentation +--- + # AUTOFIX & IDE QoL IMPLEMENTATION SUMMARY **Date:** 2026-01-24 diff --git a/AUTONOMOUS_PR18_EXPLORER_README.md b/AUTONOMOUS_PR18_EXPLORER_README.md index 3295aea7..3779546a 100644 --- a/AUTONOMOUS_PR18_EXPLORER_README.md +++ b/AUTONOMOUS_PR18_EXPLORER_README.md @@ -1,3 +1,8 @@ +--- +tags: [autonomous-pr18-explorer-readme] +register: documentation +--- + # Autonomous PR #18 Repository Explorer ## Overview diff --git a/CANONICALIZATION_IMPLEMENTATION_SUMMARY.md b/CANONICALIZATION_IMPLEMENTATION_SUMMARY.md index 09092740..bd5de79b 100644 --- a/CANONICALIZATION_IMPLEMENTATION_SUMMARY.md +++ b/CANONICALIZATION_IMPLEMENTATION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [canonicalization-implementation-summary] +register: documentation +--- + # Canonicalization Scaffold Implementation Summary **Date**: 2026-02-16 diff --git a/CHANGELOG.md b/CHANGELOG.md index eef4d3ee..83c10b30 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,8 @@ +--- +tags: [changelog] +register: documentation +--- + # CHANGELOG All notable changes to the Orthogonal Engineering project will be documented in this file. diff --git a/CHANGELOG_v0.3.0.md b/CHANGELOG_v0.3.0.md index e413e32d..55d9c966 100644 --- a/CHANGELOG_v0.3.0.md +++ b/CHANGELOG_v0.3.0.md @@ -1,150 +1,155 @@ -# Changelog v0.3.0 - Empirical Grounding & IDE Agent Integration - -**Release Date:** 2026-01-19 - -## 🆕 What's New - -### Empirical Grounding Complete - -**Filesystem Analysis:** -- ✅ **251,472 files analyzed** for canal structures -- ✅ **36,035 config files** detected (canal structures) -- ✅ **21,933 test files** detected (canal structures) -- ✅ **4,768 schema files** detected (canal structures) -- ✅ **328 CI config files** detected (canal structures) - -**Conversation Pattern Analysis:** -- ✅ **538 conversations analyzed** for turn-taking and depth patterns -- ✅ **51.9% show balanced turn-taking** (canal structure proxy) -- ✅ **0.7% show high depth** (invariant extraction success proxy) -- ✅ **4 conversations** show both canal structure AND successful invariant extraction - -**Key Finding:** Canal structures exist at scale, and when properly applied, enable invariant extraction (validated by 4 successful patterns). - -### IDE Agent Integration - -**Formal Ontology:** -- ✅ **`ontology/orthogonal_ontology.json`** - Complete JSON schema defining: - - Invariant, Canal, Drift, Evidence, AgentAction, StateTransition, FailureMode - - Agent loop state machine (idle → planning → executing → validating) - - Required invariants (no_new_lints, tests_pass, user_constraints) - -**Agent-in-IDE Profile:** -- ✅ **`AGENT_IN_IDE.md`** - Complete integration guide: - - Layer mapping (LLM output → IDE agent actions) - - Required invariant checks after every edit - - Evidence schema for causal traces - - Failure mode detection & mitigation - - Canal templates for IDE agents - -**What This Enables:** -- IDE agents can now **log evidence** for every action -- **Causal explanations** become machine-generatable -- **Invariant checks** become enforceable (lints, tests, constraints) -- **Failure modes** become detectable and mitigatable - -### Analysis Scripts - -**New Tools:** -- ✅ **`analysis/analyze_filesystem_invariants.py`** - Detects canal structures and invariant markers -- ✅ **`analysis/analyze_conversation_patterns.py`** - Analyzes turn-taking and depth scores -- ✅ **`analysis/README.md`** - Documentation for analysis scripts - -**Generated Evidence:** -- ✅ **`data/filesystem_invariants_analysis.json`** - Canal detection results -- ✅ **`data/conversation_patterns_analysis.json`** - Conversation pattern validation -- ✅ **`data/DATA_SCHEMA.md`** - Data schema documentation - -### Documentation Updates - -**New Documents:** -- ✅ **`DATA_FILESYSTEM.md`** - Complete empirical grounding documentation -- ✅ **`AGENT_IN_IDE.md`** - IDE agent integration profile -- ✅ **`ontology/orthogonal_ontology.json`** - Formal ontology schema - -**Updated Documents:** -- ✅ **`REPRODUCE.md`** - Added filesystem analysis step -- ✅ **`FAILURES.md`** - Updated with filesystem-based findings -- ✅ **`README.md`** - Added references to new files - ---- - -## 📊 Validation Metrics - -### Canal Structure Success Rate -- **51.9%** of conversations show balanced turn-taking (canal structure proxy) -- **36,035 config files** detected (canal structures exist at scale) - -### Invariant Extraction Success Rate -- **0.7%** of conversations show high depth (invariant extraction success proxy) -- **20 INVARIANT-tagged files** vs **46,542 CRAFTSMAN-tagged files** (manual tagging) - -### Combined Success Rate -- **0.7%** of conversations show both canal structure AND successful invariant extraction -- **4 successful patterns** demonstrate methodology works when properly applied - ---- - -## 🎯 What This Makes Possible - -### For IDE Agents (Like Cursor) - -**Before v0.3.0:** -- Methodology was descriptive, not actionable -- No formal ontology for agent integration -- No evidence logging schema -- No invariant check enforcement - -**After v0.3.0:** -- ✅ **Formal ontology** defines all concepts machine-readably -- ✅ **Evidence schema** enables causal traces -- ✅ **Invariant checks** are enforceable (lints, tests, constraints) -- ✅ **State machine** defines agent loop formally -- ✅ **Failure modes** have detection and mitigation policies - -**Result:** IDE agents can now be **"truly legit"** - they can: -- Log evidence for every action -- Generate causal explanations -- Enforce invariants automatically -- Detect and mitigate failure modes - -### For Methodology Validation - -**Before v0.3.0:** -- ✅ Mathematical foundations (FORMAL_FOUNDATIONS.md) -- ✅ Theoretical framework -- ⚠️ Limited empirical validation (600+ conversations) - -**After v0.3.0:** -- ✅ **251,472 files analyzed** for canal structures -- ✅ **538 conversations analyzed** for patterns -- ✅ **Canal structures detected** at scale -- ✅ **Invariant extraction validated** (4 successful patterns) -- ✅ **Correlation proven** (canal + invariant = success) - -**Result:** Methodology is now **empirically grounded** in real-world data, not just theory. - ---- - -## 🔬 Status - -**Theoretical Foundations:** ✅ Complete (v0.2.0) -**Empirical Grounding:** ✅ Complete (v0.3.0) -**IDE Agent Integration:** ✅ Complete (v0.3.0) -**Peer Review:** ⚠️ Pending -**Cross-Domain Validation:** ⚠️ Pending - ---- - -## 📝 Next Steps - -1. **Implement ontology** in actual IDE agent codebase -2. **Add evidence logging** to all tool calls -3. **Wire invariant checks** into edit actions -4. **Test failure modes** and mitigation policies -5. **Generate causal traces** for user queries -6. **Cross-domain validation** (apply to other users' filesystems) - ---- - -**Built with LOGOS first principles: Deterministic, inspectable, ideology-agnostic. Now empirically grounded and IDE-agent ready.** +--- +tags: [changelog-v0-3-0] +register: documentation +--- + +# Changelog v0.3.0 - Empirical Grounding & IDE Agent Integration + +**Release Date:** 2026-01-19 + +## 🆕 What's New + +### Empirical Grounding Complete + +**Filesystem Analysis:** +- ✅ **251,472 files analyzed** for canal structures +- ✅ **36,035 config files** detected (canal structures) +- ✅ **21,933 test files** detected (canal structures) +- ✅ **4,768 schema files** detected (canal structures) +- ✅ **328 CI config files** detected (canal structures) + +**Conversation Pattern Analysis:** +- ✅ **538 conversations analyzed** for turn-taking and depth patterns +- ✅ **51.9% show balanced turn-taking** (canal structure proxy) +- ✅ **0.7% show high depth** (invariant extraction success proxy) +- ✅ **4 conversations** show both canal structure AND successful invariant extraction + +**Key Finding:** Canal structures exist at scale, and when properly applied, enable invariant extraction (validated by 4 successful patterns). + +### IDE Agent Integration + +**Formal Ontology:** +- ✅ **`ontology/orthogonal_ontology.json`** - Complete JSON schema defining: + - Invariant, Canal, Drift, Evidence, AgentAction, StateTransition, FailureMode + - Agent loop state machine (idle → planning → executing → validating) + - Required invariants (no_new_lints, tests_pass, user_constraints) + +**Agent-in-IDE Profile:** +- ✅ **`AGENT_IN_IDE.md`** - Complete integration guide: + - Layer mapping (LLM output → IDE agent actions) + - Required invariant checks after every edit + - Evidence schema for causal traces + - Failure mode detection & mitigation + - Canal templates for IDE agents + +**What This Enables:** +- IDE agents can now **log evidence** for every action +- **Causal explanations** become machine-generatable +- **Invariant checks** become enforceable (lints, tests, constraints) +- **Failure modes** become detectable and mitigatable + +### Analysis Scripts + +**New Tools:** +- ✅ **`analysis/analyze_filesystem_invariants.py`** - Detects canal structures and invariant markers +- ✅ **`analysis/analyze_conversation_patterns.py`** - Analyzes turn-taking and depth scores +- ✅ **`analysis/README.md`** - Documentation for analysis scripts + +**Generated Evidence:** +- ✅ **`data/filesystem_invariants_analysis.json`** - Canal detection results +- ✅ **`data/conversation_patterns_analysis.json`** - Conversation pattern validation +- ✅ **`data/DATA_SCHEMA.md`** - Data schema documentation + +### Documentation Updates + +**New Documents:** +- ✅ **`DATA_FILESYSTEM.md`** - Complete empirical grounding documentation +- ✅ **`AGENT_IN_IDE.md`** - IDE agent integration profile +- ✅ **`ontology/orthogonal_ontology.json`** - Formal ontology schema + +**Updated Documents:** +- ✅ **`REPRODUCE.md`** - Added filesystem analysis step +- ✅ **`FAILURES.md`** - Updated with filesystem-based findings +- ✅ **`README.md`** - Added references to new files + +--- + +## 📊 Validation Metrics + +### Canal Structure Success Rate +- **51.9%** of conversations show balanced turn-taking (canal structure proxy) +- **36,035 config files** detected (canal structures exist at scale) + +### Invariant Extraction Success Rate +- **0.7%** of conversations show high depth (invariant extraction success proxy) +- **20 INVARIANT-tagged files** vs **46,542 CRAFTSMAN-tagged files** (manual tagging) + +### Combined Success Rate +- **0.7%** of conversations show both canal structure AND successful invariant extraction +- **4 successful patterns** demonstrate methodology works when properly applied + +--- + +## 🎯 What This Makes Possible + +### For IDE Agents (Like Cursor) + +**Before v0.3.0:** +- Methodology was descriptive, not actionable +- No formal ontology for agent integration +- No evidence logging schema +- No invariant check enforcement + +**After v0.3.0:** +- ✅ **Formal ontology** defines all concepts machine-readably +- ✅ **Evidence schema** enables causal traces +- ✅ **Invariant checks** are enforceable (lints, tests, constraints) +- ✅ **State machine** defines agent loop formally +- ✅ **Failure modes** have detection and mitigation policies + +**Result:** IDE agents can now be **"truly legit"** - they can: +- Log evidence for every action +- Generate causal explanations +- Enforce invariants automatically +- Detect and mitigate failure modes + +### For Methodology Validation + +**Before v0.3.0:** +- ✅ Mathematical foundations (FORMAL_FOUNDATIONS.md) +- ✅ Theoretical framework +- ⚠️ Limited empirical validation (600+ conversations) + +**After v0.3.0:** +- ✅ **251,472 files analyzed** for canal structures +- ✅ **538 conversations analyzed** for patterns +- ✅ **Canal structures detected** at scale +- ✅ **Invariant extraction validated** (4 successful patterns) +- ✅ **Correlation proven** (canal + invariant = success) + +**Result:** Methodology is now **empirically grounded** in real-world data, not just theory. + +--- + +## 🔬 Status + +**Theoretical Foundations:** ✅ Complete (v0.2.0) +**Empirical Grounding:** ✅ Complete (v0.3.0) +**IDE Agent Integration:** ✅ Complete (v0.3.0) +**Peer Review:** ⚠️ Pending +**Cross-Domain Validation:** ⚠️ Pending + +--- + +## 📝 Next Steps + +1. **Implement ontology** in actual IDE agent codebase +2. **Add evidence logging** to all tool calls +3. **Wire invariant checks** into edit actions +4. **Test failure modes** and mitigation policies +5. **Generate causal traces** for user queries +6. **Cross-domain validation** (apply to other users' filesystems) + +--- + +**Built with LOGOS first principles: Deterministic, inspectable, ideology-agnostic. Now empirically grounded and IDE-agent ready.** diff --git a/COMPLETE_GOVERNANCE_STACK_SUMMARY.md b/COMPLETE_GOVERNANCE_STACK_SUMMARY.md index 14aca97d..b1804b3b 100644 --- a/COMPLETE_GOVERNANCE_STACK_SUMMARY.md +++ b/COMPLETE_GOVERNANCE_STACK_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [complete-governance-stack-summary] +register: documentation +--- + # Complete Governance Stack - Implementation Summary ## Overview diff --git a/COMPONENT_INTERFACES.md b/COMPONENT_INTERFACES.md index 437a28e1..5cdfe11b 100644 --- a/COMPONENT_INTERFACES.md +++ b/COMPONENT_INTERFACES.md @@ -1,3 +1,8 @@ +--- +tags: [component-interfaces] +register: documentation +--- + # COMPONENT INTERFACES SPECIFICATION ## Sora Pipeline System - Orthogonal Engineering Glass-Box Boundary Compliant diff --git a/COMPREHENSIVE_FAILURE_ANALYSIS.md b/COMPREHENSIVE_FAILURE_ANALYSIS.md index 50745864..616dca78 100644 --- a/COMPREHENSIVE_FAILURE_ANALYSIS.md +++ b/COMPREHENSIVE_FAILURE_ANALYSIS.md @@ -1,3 +1,8 @@ +--- +tags: [comprehensive-failure-analysis] +register: documentation +--- + # COMPREHENSIVE FAILURE ANALYSIS - ORTHOGONAL ENGINEERING REPOSITORY **Analysis Date:** 2026-01-20 **Methodology:** Orthogonal Engineering with Popperian Falsification diff --git a/COMPREHENSIVE_FIX_SUMMARY.md b/COMPREHENSIVE_FIX_SUMMARY.md index e7bcf56e..fb0addea 100644 --- a/COMPREHENSIVE_FIX_SUMMARY.md +++ b/COMPREHENSIVE_FIX_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [comprehensive-fix-summary] +register: documentation +--- + # COMPREHENSIVE FORGIVENESS SYSTEM FIX - FINAL SUMMARY **Date:** 2026-01-24 diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index b0cd6de9..8728571b 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,3 +1,8 @@ +--- +tags: [contributing] +register: documentation +--- + # Contributing to Orthogonal Engineering Thank you for your interest in contributing to this repository. diff --git a/COPILOT_ONBOARDING.md b/COPILOT_ONBOARDING.md index f4fcd08b..c91271e5 100644 --- a/COPILOT_ONBOARDING.md +++ b/COPILOT_ONBOARDING.md @@ -1,3 +1,8 @@ +--- +tags: [copilot-onboarding] +register: documentation +--- + # COPILOT_ONBOARDING.md — GitHub Copilot / AI Agent Onboarding **Version:** 2.0 diff --git a/CORRESPONDENCE_FRAMEWORK.md b/CORRESPONDENCE_FRAMEWORK.md index 85de74b4..1ad4b8b4 100644 --- a/CORRESPONDENCE_FRAMEWORK.md +++ b/CORRESPONDENCE_FRAMEWORK.md @@ -1,3 +1,8 @@ +--- +tags: [correspondence-framework] +register: documentation +--- + # OPERATIONAL CORRESPONDENCE BRIDGE - PHASE 7 **File:** `CORRESPONDENCE_FRAMEWORK.md` diff --git a/CURRENT_CAPABILITIES.md b/CURRENT_CAPABILITIES.md index 585e844d..10d082ba 100644 --- a/CURRENT_CAPABILITIES.md +++ b/CURRENT_CAPABILITIES.md @@ -1,3 +1,8 @@ +--- +tags: [current-capabilities] +register: documentation +--- + # CURRENT CAPABILITIES ANALYSIS ## Orthogonal Engineering Repository Processing Infrastructure diff --git a/DATA_FILESYSTEM.md b/DATA_FILESYSTEM.md index 991cb22f..a73a0d75 100644 --- a/DATA_FILESYSTEM.md +++ b/DATA_FILESYSTEM.md @@ -1,212 +1,217 @@ -# Filesystem-Based Empirical Grounding - -**How 251,472 files and 233.66 GB of real-world data validate Orthogonal Engineering** - ---- - -## Overview - -This document describes the empirical evidence that grounds Orthogonal Engineering methodology in **actual filesystem structure** and **conversation patterns**, not just theoretical claims. - -**Data Sources:** -- **MASTER_INDEX.csv**: 251,472 files indexed (~233.66 GB) -- **depth_analysis_FULL.json**: 538 conversations analyzed -- **Analysis outputs**: `data/filesystem_invariants_analysis.json`, `data/conversation_patterns_analysis.json` - ---- - -## Canal Structure Detection - -### Findings - -From filesystem analysis (`data/filesystem_invariants_analysis.json`): - -**Canal structures detected:** -- **Config structures**: 36,035 files (14.3% of total) -- **Test structures**: 21,933 files (8.7% of total) -- **Documentation structures**: 5,907 files (2.3% of total) -- **Schema structures**: 4,768 files (1.9% of total) -- **Package structures**: 3,060 files (1.2% of total) -- **CI structures**: 328 files (0.1% of total) - -**Interpretation:** -- **Canal structures exist** in real filesystems at significant scale -- **Config and test structures** are most common (canal-like patterns for routing drift) -- **CRAFTSMAN-tagged projects** show highest canal coverage (tests, configs, schemas, CI) - -### Canal Coverage by Project Type - -| Project Tag | Config | Tests | Schema | CI | Total Files | -|------------|--------|-------|--------|-----|-------------| -| CRAFTSMAN | 3,156 | 3,516 | 2,602 | 243 | 46,542 | -| UNCATEGORIZED | 15,275 | 18,406 | 2,166 | 85 | 184,628 | -| MINECRAFT | 17,563 | 1 | 0 | 0 | 18,877 | - -**Key insight:** Projects tagged with methodology concepts (CRAFTSMAN) show **higher canal structure density**, validating that canal-aware organization correlates with structured extraction. - ---- - -## Invariant Extraction Evidence - -### Tagging Evidence - -From filesystem analysis: - -- **INVARIANT-tagged files**: 20 -- **CRAFTSMAN-tagged files**: 46,542 -- **Total tagged files**: 46,562 (18.5% of total) - -**Interpretation:** -- Methodology has been **applied** to real projects (tagging rate 18.5%) -- **CRAFTSMAN tag** (structured, extractable) much more common than **INVARIANT tag** (pure signal) -- This aligns with methodology: most outputs are "craftsman" (structured but with some drift), few are pure "invariant" - -### Invariant Marker Detection - -Pattern-based detection found: -- **Type definitions**: 4 files -- **Structured outputs**: 1 file - -**Limitation:** Pattern-based detection is conservative (only finds explicit markers). Real invariant extraction happens through **canal structures** (tests, configs, schemas), not just text markers. - ---- - -## Conversation Pattern Validation - -### Turn-Taking Analysis (Canal Structure Proxy) - -From conversation analysis (`data/conversation_patterns_analysis.json`): - -**Statistics:** -- **Total conversations**: 538 -- **Balanced turn ratio** (0.8 ≤ ratio ≤ 1.2): 279 (51.9%) -- **Imbalanced turn ratio**: 259 (48.1%) -- **Mean turn ratio**: 0.739 - -**Interpretation:** -- **~52% of conversations** show balanced turn-taking (canal-like structure) -- **~48% show drift** (imbalanced turns, likely verbosity/attribution) -- This validates that **canal structures** (balanced turns) are achievable but not universal - -### Depth Score Analysis (Invariant Extraction Success Proxy) - -**Statistics:** -- **Mean depth score**: 0.292 -- **Median depth score**: 0.289 -- **High depth** (>0.5): 4 conversations (0.7%) -- **Medium depth** (0.3-0.5): 225 conversations (41.8%) -- **Low depth** (<0.3): 309 conversations (57.4%) - -**Interpretation:** -- Most conversations have **low-to-medium depth** (drift present) -- **High depth** (successful invariant extraction) is rare (0.7%) -- This aligns with methodology: **invariant extraction is hard**, requires canal structures - -### Successful Pattern Correlation - -**Conversations with both:** -- High depth (>0.5) **AND** balanced turns (0.8 ≤ ratio ≤ 1.2): **4 conversations (0.7%)** - -**Top 3 by depth:** -1. "Mods with 50 pages" - depth: 0.740, turn ratio: 0.954 -2. "Manuel de LSNF" - depth: 0.645, turn ratio: 0.928 -3. "Assist with user request." - depth: 0.625, turn ratio: 0.998 - -**Interpretation:** -- **Successful patterns** (canal + invariant extraction) are rare but **demonstrably achievable** -- Top conversations show **both** balanced turns (canal) **and** high depth (invariant extraction) -- This validates the methodology's core claim: **canal structures enable invariant extraction** - ---- - -## Methodology Validation Metrics - -### Canal Structure Success Rate - -**51.9%** of conversations show balanced turn-taking (canal structure proxy). - -**Validation:** Canal structures are **achievable** at scale, but not automatic. Methodology provides patterns to increase success rate. - -### Invariant Extraction Success Rate - -**0.7%** of conversations show high depth (invariant extraction success proxy). - -**Validation:** Invariant extraction is **hard** and **rare** without explicit canal design. Methodology provides templates to increase success rate. - -### Combined Success Rate - -**0.7%** of conversations show both canal structure **and** successful invariant extraction. - -**Validation:** When both conditions met, methodology claims are **validated**. The 4 successful conversations demonstrate the methodology works when properly applied. - ---- - -## Project Classification - -From filesystem analysis: - -**By type:** -- **Code projects**: 61,751 files (24.5%) -- **AI work (raw)**: 30,448 files (12.1%) -- **AI work (structured)**: 65 files (0.03%) -- **Game mods**: 2,080 files (0.8%) -- **Archives**: 944 files (0.4%) -- **Other**: 156,183 files (62.1%) - -**Key insight:** Only **0.03%** of AI work files are tagged as "structured" (INVARIANT/CRAFTSMAN), showing that **explicit methodology application** is rare but **possible**. - ---- - -## Limitations & Caveats - -1. **Pattern-based detection is conservative**: Only finds explicit markers, not implicit canal structures -2. **Conversation depth scores are proxies**: Not direct measurements of invariant extraction -3. **Single-user dataset**: Validation limited to one user's filesystem/conversations -4. **Tagging is manual**: INVARIANT/CRAFTSMAN tags applied by user, not automatic - -**However:** The **scale** (251K files, 233 GB) and **consistency** of findings validate that: -- Canal structures exist at scale -- Invariant extraction is achievable (though rare) -- Methodology provides patterns to increase success rates - ---- - -## How This Makes the Repository "Truly Legit" - -### Before (v0.2.0): -- ✅ Mathematical foundations (FORMAL_FOUNDATIONS.md) -- ✅ Theoretical framework -- ⚠️ Limited empirical validation (600+ conversations, but no filesystem grounding) - -### After (with filesystem data): -- ✅ **251,472 files analyzed** for canal structures -- ✅ **538 conversations analyzed** for turn-taking and depth patterns -- ✅ **Canal structures detected** at scale (36K+ config files, 22K+ test files) -- ✅ **Invariant extraction validated** (4 successful patterns found) -- ✅ **Correlation proven** (canal structure + invariant extraction = success) - -**Result:** Methodology is now **empirically grounded** in real-world data, not just theory. - ---- - -## Reproducing This Analysis - -See `analysis/README.md` for scripts to reproduce: - -```bash -python analysis/analyze_filesystem_invariants.py [CSV_PATH] [OUTPUT_PATH] -python analysis/analyze_conversation_patterns.py [JSON_PATH] [OUTPUT_PATH] -``` - ---- - -## Next Steps - -1. **Cross-domain validation**: Apply to other users' filesystems -2. **Automated tagging**: Build tools to automatically detect INVARIANT/CRAFTSMAN -3. **Canal library**: Extract common canal patterns into reusable templates -4. **IDE agent integration**: Wire findings into `AGENT_IN_IDE.md` implementation - ---- - -**Status:** Empirical grounding complete ✅ | Cross-domain validation pending ⚠️ +--- +tags: [data-filesystem] +register: documentation +--- + +# Filesystem-Based Empirical Grounding + +**How 251,472 files and 233.66 GB of real-world data validate Orthogonal Engineering** + +--- + +## Overview + +This document describes the empirical evidence that grounds Orthogonal Engineering methodology in **actual filesystem structure** and **conversation patterns**, not just theoretical claims. + +**Data Sources:** +- **MASTER_INDEX.csv**: 251,472 files indexed (~233.66 GB) +- **depth_analysis_FULL.json**: 538 conversations analyzed +- **Analysis outputs**: `data/filesystem_invariants_analysis.json`, `data/conversation_patterns_analysis.json` + +--- + +## Canal Structure Detection + +### Findings + +From filesystem analysis (`data/filesystem_invariants_analysis.json`): + +**Canal structures detected:** +- **Config structures**: 36,035 files (14.3% of total) +- **Test structures**: 21,933 files (8.7% of total) +- **Documentation structures**: 5,907 files (2.3% of total) +- **Schema structures**: 4,768 files (1.9% of total) +- **Package structures**: 3,060 files (1.2% of total) +- **CI structures**: 328 files (0.1% of total) + +**Interpretation:** +- **Canal structures exist** in real filesystems at significant scale +- **Config and test structures** are most common (canal-like patterns for routing drift) +- **CRAFTSMAN-tagged projects** show highest canal coverage (tests, configs, schemas, CI) + +### Canal Coverage by Project Type + +| Project Tag | Config | Tests | Schema | CI | Total Files | +|------------|--------|-------|--------|-----|-------------| +| CRAFTSMAN | 3,156 | 3,516 | 2,602 | 243 | 46,542 | +| UNCATEGORIZED | 15,275 | 18,406 | 2,166 | 85 | 184,628 | +| MINECRAFT | 17,563 | 1 | 0 | 0 | 18,877 | + +**Key insight:** Projects tagged with methodology concepts (CRAFTSMAN) show **higher canal structure density**, validating that canal-aware organization correlates with structured extraction. + +--- + +## Invariant Extraction Evidence + +### Tagging Evidence + +From filesystem analysis: + +- **INVARIANT-tagged files**: 20 +- **CRAFTSMAN-tagged files**: 46,542 +- **Total tagged files**: 46,562 (18.5% of total) + +**Interpretation:** +- Methodology has been **applied** to real projects (tagging rate 18.5%) +- **CRAFTSMAN tag** (structured, extractable) much more common than **INVARIANT tag** (pure signal) +- This aligns with methodology: most outputs are "craftsman" (structured but with some drift), few are pure "invariant" + +### Invariant Marker Detection + +Pattern-based detection found: +- **Type definitions**: 4 files +- **Structured outputs**: 1 file + +**Limitation:** Pattern-based detection is conservative (only finds explicit markers). Real invariant extraction happens through **canal structures** (tests, configs, schemas), not just text markers. + +--- + +## Conversation Pattern Validation + +### Turn-Taking Analysis (Canal Structure Proxy) + +From conversation analysis (`data/conversation_patterns_analysis.json`): + +**Statistics:** +- **Total conversations**: 538 +- **Balanced turn ratio** (0.8 ≤ ratio ≤ 1.2): 279 (51.9%) +- **Imbalanced turn ratio**: 259 (48.1%) +- **Mean turn ratio**: 0.739 + +**Interpretation:** +- **~52% of conversations** show balanced turn-taking (canal-like structure) +- **~48% show drift** (imbalanced turns, likely verbosity/attribution) +- This validates that **canal structures** (balanced turns) are achievable but not universal + +### Depth Score Analysis (Invariant Extraction Success Proxy) + +**Statistics:** +- **Mean depth score**: 0.292 +- **Median depth score**: 0.289 +- **High depth** (>0.5): 4 conversations (0.7%) +- **Medium depth** (0.3-0.5): 225 conversations (41.8%) +- **Low depth** (<0.3): 309 conversations (57.4%) + +**Interpretation:** +- Most conversations have **low-to-medium depth** (drift present) +- **High depth** (successful invariant extraction) is rare (0.7%) +- This aligns with methodology: **invariant extraction is hard**, requires canal structures + +### Successful Pattern Correlation + +**Conversations with both:** +- High depth (>0.5) **AND** balanced turns (0.8 ≤ ratio ≤ 1.2): **4 conversations (0.7%)** + +**Top 3 by depth:** +1. "Mods with 50 pages" - depth: 0.740, turn ratio: 0.954 +2. "Manuel de LSNF" - depth: 0.645, turn ratio: 0.928 +3. "Assist with user request." - depth: 0.625, turn ratio: 0.998 + +**Interpretation:** +- **Successful patterns** (canal + invariant extraction) are rare but **demonstrably achievable** +- Top conversations show **both** balanced turns (canal) **and** high depth (invariant extraction) +- This validates the methodology's core claim: **canal structures enable invariant extraction** + +--- + +## Methodology Validation Metrics + +### Canal Structure Success Rate + +**51.9%** of conversations show balanced turn-taking (canal structure proxy). + +**Validation:** Canal structures are **achievable** at scale, but not automatic. Methodology provides patterns to increase success rate. + +### Invariant Extraction Success Rate + +**0.7%** of conversations show high depth (invariant extraction success proxy). + +**Validation:** Invariant extraction is **hard** and **rare** without explicit canal design. Methodology provides templates to increase success rate. + +### Combined Success Rate + +**0.7%** of conversations show both canal structure **and** successful invariant extraction. + +**Validation:** When both conditions met, methodology claims are **validated**. The 4 successful conversations demonstrate the methodology works when properly applied. + +--- + +## Project Classification + +From filesystem analysis: + +**By type:** +- **Code projects**: 61,751 files (24.5%) +- **AI work (raw)**: 30,448 files (12.1%) +- **AI work (structured)**: 65 files (0.03%) +- **Game mods**: 2,080 files (0.8%) +- **Archives**: 944 files (0.4%) +- **Other**: 156,183 files (62.1%) + +**Key insight:** Only **0.03%** of AI work files are tagged as "structured" (INVARIANT/CRAFTSMAN), showing that **explicit methodology application** is rare but **possible**. + +--- + +## Limitations & Caveats + +1. **Pattern-based detection is conservative**: Only finds explicit markers, not implicit canal structures +2. **Conversation depth scores are proxies**: Not direct measurements of invariant extraction +3. **Single-user dataset**: Validation limited to one user's filesystem/conversations +4. **Tagging is manual**: INVARIANT/CRAFTSMAN tags applied by user, not automatic + +**However:** The **scale** (251K files, 233 GB) and **consistency** of findings validate that: +- Canal structures exist at scale +- Invariant extraction is achievable (though rare) +- Methodology provides patterns to increase success rates + +--- + +## How This Makes the Repository "Truly Legit" + +### Before (v0.2.0): +- ✅ Mathematical foundations (FORMAL_FOUNDATIONS.md) +- ✅ Theoretical framework +- ⚠️ Limited empirical validation (600+ conversations, but no filesystem grounding) + +### After (with filesystem data): +- ✅ **251,472 files analyzed** for canal structures +- ✅ **538 conversations analyzed** for turn-taking and depth patterns +- ✅ **Canal structures detected** at scale (36K+ config files, 22K+ test files) +- ✅ **Invariant extraction validated** (4 successful patterns found) +- ✅ **Correlation proven** (canal structure + invariant extraction = success) + +**Result:** Methodology is now **empirically grounded** in real-world data, not just theory. + +--- + +## Reproducing This Analysis + +See `analysis/README.md` for scripts to reproduce: + +```bash +python analysis/analyze_filesystem_invariants.py [CSV_PATH] [OUTPUT_PATH] +python analysis/analyze_conversation_patterns.py [JSON_PATH] [OUTPUT_PATH] +``` + +--- + +## Next Steps + +1. **Cross-domain validation**: Apply to other users' filesystems +2. **Automated tagging**: Build tools to automatically detect INVARIANT/CRAFTSMAN +3. **Canal library**: Extract common canal patterns into reusable templates +4. **IDE agent integration**: Wire findings into `AGENT_IN_IDE.md` implementation + +--- + +**Status:** Empirical grounding complete ✅ | Cross-domain validation pending ⚠️ diff --git a/DATA_SCHEMA.md b/DATA_SCHEMA.md index 252fdeef..378a6aa8 100644 --- a/DATA_SCHEMA.md +++ b/DATA_SCHEMA.md @@ -1,43 +1,48 @@ -# Data Schema Documentation - -This directory contains empirical evidence files that ground the Orthogonal Engineering methodology in real-world data. - -## Files - -### External Data Sources (Not Included) - -- **MASTER_INDEX.csv** (251,472 rows, ~233 GB indexed) - - Location: `c:\Users\Aidor\Desktop\MASTER_INDEX.csv` - - Schema: `filepath,filename,size_mb,size_bytes,type,project_tag,extension,last_modified,parent_dir` - - Privacy: Contains full file paths; sanitized summary included in `MASTER_INDEX_SUMMARY.json` - -- **depth_analysis_FULL.json** (~5,920 conversation records) - - Location: `c:\Users\Aidor\Desktop\depth_analysis_FULL.json` - - Schema: Array of conversation objects with: - - `id`: Conversation identifier - - `title`: Conversation title - - `msg_count`: Total message count - - `user_msgs`: User message count - - `assistant_msgs`: Assistant message count - - `duration_hours`: Conversation duration - - `turn_ratio`: user_msgs / assistant_msgs (canal structure proxy) - - `create_time`: Unix timestamp - - `depth_score`: Invariant extraction success proxy (0-1) - -### Generated Analysis Files - -- **filesystem_invariants_analysis.json**: Canal structure detection and invariant marker analysis -- **conversation_patterns_analysis.json**: Turn-taking patterns and depth score validation - -## Usage - -Run analysis scripts from the `analysis/` directory: - -```bash -python analysis/analyze_filesystem_invariants.py [CSV_PATH] [OUTPUT_PATH] -python analysis/analyze_conversation_patterns.py [JSON_PATH] [OUTPUT_PATH] -``` - -## Privacy Notes - -Raw data files are not included in the repository to protect user privacy. Only aggregate statistics and analysis outputs are included. +--- +tags: [data-schema] +register: documentation +--- + +# Data Schema Documentation + +This directory contains empirical evidence files that ground the Orthogonal Engineering methodology in real-world data. + +## Files + +### External Data Sources (Not Included) + +- **MASTER_INDEX.csv** (251,472 rows, ~233 GB indexed) + - Location: `c:\Users\Aidor\Desktop\MASTER_INDEX.csv` + - Schema: `filepath,filename,size_mb,size_bytes,type,project_tag,extension,last_modified,parent_dir` + - Privacy: Contains full file paths; sanitized summary included in `MASTER_INDEX_SUMMARY.json` + +- **depth_analysis_FULL.json** (~5,920 conversation records) + - Location: `c:\Users\Aidor\Desktop\depth_analysis_FULL.json` + - Schema: Array of conversation objects with: + - `id`: Conversation identifier + - `title`: Conversation title + - `msg_count`: Total message count + - `user_msgs`: User message count + - `assistant_msgs`: Assistant message count + - `duration_hours`: Conversation duration + - `turn_ratio`: user_msgs / assistant_msgs (canal structure proxy) + - `create_time`: Unix timestamp + - `depth_score`: Invariant extraction success proxy (0-1) + +### Generated Analysis Files + +- **filesystem_invariants_analysis.json**: Canal structure detection and invariant marker analysis +- **conversation_patterns_analysis.json**: Turn-taking patterns and depth score validation + +## Usage + +Run analysis scripts from the `analysis/` directory: + +```bash +python analysis/analyze_filesystem_invariants.py [CSV_PATH] [OUTPUT_PATH] +python analysis/analyze_conversation_patterns.py [JSON_PATH] [OUTPUT_PATH] +``` + +## Privacy Notes + +Raw data files are not included in the repository to protect user privacy. Only aggregate statistics and analysis outputs are included. diff --git a/DAY1_SUMMARY.md b/DAY1_SUMMARY.md index d815f9a5..6e3b8852 100644 --- a/DAY1_SUMMARY.md +++ b/DAY1_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [day1-summary] +register: documentation +--- + # DAY 1 IMPLEMENTATION SUMMARY ## Sora Pipeline Development - Orthogonal Engineering Glass-Box Boundary Compliant diff --git a/DAY2_COMPLETION_SUMMARY.md b/DAY2_COMPLETION_SUMMARY.md index e3d6a557..48eeb6fd 100644 --- a/DAY2_COMPLETION_SUMMARY.md +++ b/DAY2_COMPLETION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [day2-completion-summary] +register: documentation +--- + # DAY 2 COMPLETION SUMMARY: EMBEDDING SYSTEM & VECTOR STORE **Date:** 2026-01-24 diff --git a/DAY3_COMPLETION_SUMMARY.md b/DAY3_COMPLETION_SUMMARY.md index 627468c5..e3f81ba6 100644 --- a/DAY3_COMPLETION_SUMMARY.md +++ b/DAY3_COMPLETION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [day3-completion-summary] +register: documentation +--- + # DAY 3 COMPLETION SUMMARY - Sora Pipeline Implementation **Date:** 2026-01-24 diff --git a/DAY4_COMPLETION_SUMMARY.md b/DAY4_COMPLETION_SUMMARY.md index 93e6f8fa..d2fa3553 100644 --- a/DAY4_COMPLETION_SUMMARY.md +++ b/DAY4_COMPLETION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [day4-completion-summary] +register: documentation +--- + # DAY 4 COMPLETION SUMMARY - Media Processing Pipeline Implementation **Date:** 2026-01-24 diff --git a/DEEPSEEK_COMPLETE.md b/DEEPSEEK_COMPLETE.md index 9c8436b3..c44364ae 100644 --- a/DEEPSEEK_COMPLETE.md +++ b/DEEPSEEK_COMPLETE.md @@ -1,3 +1,8 @@ +--- +tags: [deepseek-complete] +register: documentation +--- + # DeepSeek Maximal Copilot Schema - Implementation Complete ## Executive Summary diff --git a/DEEPSEEK_COPILOT_SCHEMA_README.md b/DEEPSEEK_COPILOT_SCHEMA_README.md index 461082d0..fc1bebad 100644 --- a/DEEPSEEK_COPILOT_SCHEMA_README.md +++ b/DEEPSEEK_COPILOT_SCHEMA_README.md @@ -1,3 +1,8 @@ +--- +tags: [deepseek-copilot-schema-readme] +register: documentation +--- + # DeepSeek Maximal Copilot Schema ## Overview diff --git a/DEEPSEEK_FINAL_STATUS.md b/DEEPSEEK_FINAL_STATUS.md index 5feb3923..1ebd542b 100644 --- a/DEEPSEEK_FINAL_STATUS.md +++ b/DEEPSEEK_FINAL_STATUS.md @@ -1,3 +1,8 @@ +--- +tags: [deepseek-final-status] +register: documentation +--- + # DeepSeek Schema - Final Status Report ## ✅ IMPLEMENTATION COMPLETE - PRODUCTION READY diff --git a/DEEPSEEK_FORENSIC_TOOLS.md b/DEEPSEEK_FORENSIC_TOOLS.md index 80bf188e..0f063a0e 100644 --- a/DEEPSEEK_FORENSIC_TOOLS.md +++ b/DEEPSEEK_FORENSIC_TOOLS.md @@ -1,3 +1,8 @@ +--- +tags: [deepseek-forensic-tools] +register: documentation +--- + # DeepSeek Forensic Tools - Implementation Summary ## Overview diff --git a/DEEPSEEK_GUARDIAN_COMPLETE_SYSTEM.md b/DEEPSEEK_GUARDIAN_COMPLETE_SYSTEM.md index 22800b4d..9eaf895e 100644 --- a/DEEPSEEK_GUARDIAN_COMPLETE_SYSTEM.md +++ b/DEEPSEEK_GUARDIAN_COMPLETE_SYSTEM.md @@ -1,3 +1,8 @@ +--- +tags: [deepseek-guardian-complete-system] +register: documentation +--- + # DeepSeek + Guardian Frame - Complete System Summary ## Overview diff --git a/DEEPSEEK_IMPLEMENTATION_SUMMARY.md b/DEEPSEEK_IMPLEMENTATION_SUMMARY.md index 6b4be8fa..14dc8300 100644 --- a/DEEPSEEK_IMPLEMENTATION_SUMMARY.md +++ b/DEEPSEEK_IMPLEMENTATION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [deepseek-implementation-summary] +register: documentation +--- + # DeepSeek Maximal Copilot Schema - Implementation Summary ## Overview diff --git a/DEEPSEEK_QUICK_REFERENCE.md b/DEEPSEEK_QUICK_REFERENCE.md index e865b0b9..bd3d976e 100644 --- a/DEEPSEEK_QUICK_REFERENCE.md +++ b/DEEPSEEK_QUICK_REFERENCE.md @@ -1,3 +1,8 @@ +--- +tags: [deepseek-quick-reference] +register: documentation +--- + # DeepSeek Copilot Schema - Quick Reference ## What is it? diff --git a/DEPLOYMENT_GUIDE.md b/DEPLOYMENT_GUIDE.md index 54115eb9..5ca9121b 100644 --- a/DEPLOYMENT_GUIDE.md +++ b/DEPLOYMENT_GUIDE.md @@ -1,3 +1,8 @@ +--- +tags: [deployment-guide] +register: documentation +--- + # 🚀 DEPLOYMENT GUIDE - PROOF_PACKAGE ## ✅ WHAT YOU HAVE diff --git a/DEVIN_ONBOARDING.md b/DEVIN_ONBOARDING.md index 795c8428..f93febbf 100644 --- a/DEVIN_ONBOARDING.md +++ b/DEVIN_ONBOARDING.md @@ -1,3 +1,8 @@ +--- +tags: [devin-onboarding] +register: documentation +--- + # Devin AI Onboarding Document **Date:** 2026-04-10 diff --git a/Devin Ai PR 84 for github copilot atomic engineers task list.md b/Devin Ai PR 84 for github copilot atomic engineers task list.md index 9eb107a3..ffc8e7c2 100644 --- a/Devin Ai PR 84 for github copilot atomic engineers task list.md +++ b/Devin Ai PR 84 for github copilot atomic engineers task list.md @@ -1,3 +1,8 @@ +--- +tags: [devin-ai-pr-84-for-github-copilot-atomic-engineers-task-list] +register: documentation +--- + so the only real invariant is with you indexing everything and copilot , so now we just change it to all major cloud llms not just kimi , and extend to 84# from 83#, forget about cloud ai virtual environments, we'll just have copilot github do it do you get me, so enumerate all major cloud ai, the benchmarks and we just do not just only kimi ai, 84# pr spec diff --git a/ENV_TEMPLATE.md b/ENV_TEMPLATE.md index cfc5bdbe..c6baf945 100644 --- a/ENV_TEMPLATE.md +++ b/ENV_TEMPLATE.md @@ -1,3 +1,8 @@ +--- +tags: [env-template] +register: documentation +--- + # ENVIRONMENT VARIABLE TEMPLATE # Orthogonal Engineering Orchestration System diff --git a/EVIDENCE_FILES_GUIDE.md b/EVIDENCE_FILES_GUIDE.md index 308a4e66..9b7684fe 100644 --- a/EVIDENCE_FILES_GUIDE.md +++ b/EVIDENCE_FILES_GUIDE.md @@ -1,3 +1,8 @@ +--- +tags: [evidence-files-guide] +register: documentation +--- + # EVIDENCE FILES TO ADD TO REPOSITORY ## 📊 Additional Proof Files Found on Desktop diff --git a/EXTENSION_ANALYSIS.md b/EXTENSION_ANALYSIS.md index 64740627..8b9d1e4a 100644 --- a/EXTENSION_ANALYSIS.md +++ b/EXTENSION_ANALYSIS.md @@ -1,3 +1,8 @@ +--- +tags: [extension-analysis] +register: documentation +--- + # EXTENSION ANALYSIS: INCREMENTAL FILE PROCESSOR ## Extension Points for Sora Pipeline Integration diff --git a/EXTREME_WORK_CERTIFICATION.md b/EXTREME_WORK_CERTIFICATION.md index 68c1463c..97f60478 100644 --- a/EXTREME_WORK_CERTIFICATION.md +++ b/EXTREME_WORK_CERTIFICATION.md @@ -1,3 +1,8 @@ +--- +tags: [extreme-work-certification] +register: documentation +--- + # Extreme Work Certification System ## Overview diff --git a/EXTREME_WORK_IMPLEMENTATION_SUMMARY.md b/EXTREME_WORK_IMPLEMENTATION_SUMMARY.md index 5dc3014d..36dbd89f 100644 --- a/EXTREME_WORK_IMPLEMENTATION_SUMMARY.md +++ b/EXTREME_WORK_IMPLEMENTATION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [extreme-work-implementation-summary] +register: documentation +--- + # Extreme Work Boundaries Implementation Summary ## Overview diff --git a/FAILURES.md b/FAILURES.md index 93f6e534..9500827b 100644 --- a/FAILURES.md +++ b/FAILURES.md @@ -1,3 +1,8 @@ +--- +tags: [failures] +register: documentation +--- + # FAILURES - What Doesn't Work **Version:** v0.8.0 diff --git a/FAILURE_DRIVEN_WORKFLOW.md b/FAILURE_DRIVEN_WORKFLOW.md index 94916060..c1408f60 100644 --- a/FAILURE_DRIVEN_WORKFLOW.md +++ b/FAILURE_DRIVEN_WORKFLOW.md @@ -1,3 +1,8 @@ +--- +tags: [failure-driven-workflow] +register: documentation +--- + # FAILURE-DRIVEN DEVELOPMENT WORKFLOW # Orthogonal Engineering - Glass Box Methodology # Version: 1.0.0 diff --git a/FAILURE_ONTOLOGY.md b/FAILURE_ONTOLOGY.md index 09b561d2..ded2a99c 100644 --- a/FAILURE_ONTOLOGY.md +++ b/FAILURE_ONTOLOGY.md @@ -1,3 +1,8 @@ +--- +tags: [failure-ontology] +register: documentation +--- + # FAILURE ONTOLOGY - Why Failures Are The Core of Orthogonal Engineering **Version:** 1.0.0 diff --git a/FALSIFIABLE_BRIDGES.md b/FALSIFIABLE_BRIDGES.md index cb244f1a..69d32047 100644 --- a/FALSIFIABLE_BRIDGES.md +++ b/FALSIFIABLE_BRIDGES.md @@ -1,3 +1,8 @@ +--- +tags: [falsifiable-bridges] +register: documentation +--- + # FALSIFIABLE BRIDGES **File:** `FALSIFIABLE_BRIDGES.md` diff --git a/FILE_PURPOSE_MAP.md b/FILE_PURPOSE_MAP.md index 174b96e3..283a4a71 100644 --- a/FILE_PURPOSE_MAP.md +++ b/FILE_PURPOSE_MAP.md @@ -1,3 +1,8 @@ +--- +tags: [file-purpose-map] +register: documentation +--- + # COMPLETE FILE PURPOSE MAP **Repository:** orthogonal-engineering (Main 14) **Date:** 2026-01-19 diff --git a/FINAL_ACCOMPLISHMENT.md b/FINAL_ACCOMPLISHMENT.md index 8bbf5879..89db5dd0 100644 --- a/FINAL_ACCOMPLISHMENT.md +++ b/FINAL_ACCOMPLISHMENT.md @@ -1,3 +1,8 @@ +--- +tags: [final-accomplishment] +register: documentation +--- + # FINAL ACCOMPLISHMENT - Mathematical Proof System Complete ## 🎯 WHAT WAS REQUESTED diff --git a/FINAL_ATOMIC_INVARIANT_STATUS.md b/FINAL_ATOMIC_INVARIANT_STATUS.md index cf66dd4a..38d8774f 100644 --- a/FINAL_ATOMIC_INVARIANT_STATUS.md +++ b/FINAL_ATOMIC_INVARIANT_STATUS.md @@ -1,3 +1,8 @@ +--- +tags: [final-atomic-invariant-status] +register: documentation +--- + # FINAL ATOMIC INVARIANT STATUS REPORT **Report Generated:** 2026-01-20T17:45:00Z diff --git a/FINAL_BLUEPRINT.md b/FINAL_BLUEPRINT.md index 370ab895..97880ab3 100644 --- a/FINAL_BLUEPRINT.md +++ b/FINAL_BLUEPRINT.md @@ -1,3 +1,8 @@ +--- +tags: [final-blueprint] +register: documentation +--- + # 🏗️ FINAL BLLUEPRINT - Orthogonal Engineering Complete System **Version:** 2.0.0 diff --git a/FINAL_CORRESPONDENCE_FIX_SUMMARY.md b/FINAL_CORRESPONDENCE_FIX_SUMMARY.md index ede8889e..b23f79e1 100644 --- a/FINAL_CORRESPONDENCE_FIX_SUMMARY.md +++ b/FINAL_CORRESPONDENCE_FIX_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [final-correspondence-fix-summary] +register: documentation +--- + # FINAL CORRESPONDENCE FIX IMPLEMENTATION SUMMARY **File:** `FINAL_CORRESPONDENCE_FIX_SUMMARY.md` diff --git a/FINAL_HANDOFF_SUMMARY.md b/FINAL_HANDOFF_SUMMARY.md index 0019a5fa..4b7b22a6 100644 --- a/FINAL_HANDOFF_SUMMARY.md +++ b/FINAL_HANDOFF_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [final-handoff-summary] +register: documentation +--- + # FINAL HANDOFF SUMMARY: PHASE 3 ATOMICITY FIX COMPLETE ## 🎯 MISSION ACCOMPLISHED diff --git a/FINAL_IMPLEMENTATION_SUMMARY.md b/FINAL_IMPLEMENTATION_SUMMARY.md index 5f6950cf..296a330c 100644 --- a/FINAL_IMPLEMENTATION_SUMMARY.md +++ b/FINAL_IMPLEMENTATION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [final-implementation-summary] +register: documentation +--- + # FINAL IMPLEMENTATION SUMMARY: AI INTERACTION SYSTEM FOR ORTHOGONAL ENGINEERING **Version:** 1.0 diff --git a/FINAL_TACTICAL_AI_STATUS.md b/FINAL_TACTICAL_AI_STATUS.md index 106773a7..ada50c00 100644 --- a/FINAL_TACTICAL_AI_STATUS.md +++ b/FINAL_TACTICAL_AI_STATUS.md @@ -1,3 +1,8 @@ +--- +tags: [final-tactical-ai-status] +register: documentation +--- + # Final Status: HUMAN_AI_TACTICAL_PARTNERSHIP_ARCHITECTURE **Date**: 2026-03-15 diff --git a/FINAL_TRACEABILITY_SUMMARY.md b/FINAL_TRACEABILITY_SUMMARY.md index e984cdb4..ff30f30a 100644 --- a/FINAL_TRACEABILITY_SUMMARY.md +++ b/FINAL_TRACEABILITY_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [final-traceability-summary] +register: documentation +--- + # FINAL TRACEABILITY SUMMARY # Yeshua Mathematics Implementation - Complete Cryptographic Verification diff --git a/FOOD_CART_UNIVERSE_README.md b/FOOD_CART_UNIVERSE_README.md index c689b55b..39ecd049 100644 --- a/FOOD_CART_UNIVERSE_README.md +++ b/FOOD_CART_UNIVERSE_README.md @@ -1,3 +1,8 @@ +--- +tags: [food-cart-universe-readme] +register: documentation +--- + # Food Cart Universe **Canonical Schema Implementation for Orthogonal Engineering** diff --git a/FORGIVENESS_IMPLEMENTATION_SUMMARY.md b/FORGIVENESS_IMPLEMENTATION_SUMMARY.md index 9a9bac1b..cf35f28f 100644 --- a/FORGIVENESS_IMPLEMENTATION_SUMMARY.md +++ b/FORGIVENESS_IMPLEMENTATION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [forgiveness-implementation-summary] +register: documentation +--- + # Forgiveness Atomic Implementation Summary **Date:** 2026-01-23 diff --git a/FORMAL_FOUNDATIONS.md b/FORMAL_FOUNDATIONS.md index b08d2f47..99c48344 100644 --- a/FORMAL_FOUNDATIONS.md +++ b/FORMAL_FOUNDATIONS.md @@ -1,3 +1,8 @@ +--- +tags: [formal-foundations] +register: documentation +--- + # FORMAL FOUNDATIONS ## Mathematical Framework and Assumptions diff --git a/FORWARD_TO_CLOUD_AI.md b/FORWARD_TO_CLOUD_AI.md index 17de858d..7707ea71 100644 --- a/FORWARD_TO_CLOUD_AI.md +++ b/FORWARD_TO_CLOUD_AI.md @@ -1,3 +1,8 @@ +--- +tags: [forward-to-cloud-ai] +register: documentation +--- + # FORWARD TO CLOUD AI - ORTHOGONAL ENGINEERING COMPLETE SYNC **Date:** 2026-01-20 diff --git a/GEMINI.md b/GEMINI.md index ab6a87fd..a96f0aee 100644 --- a/GEMINI.md +++ b/GEMINI.md @@ -1,3 +1,8 @@ +--- +tags: [gemini] +register: documentation +--- + ## Gemini Warden Role You are `gemini_warden`, the cloud warden for the Orthogonal Engineering Local AI Warden System. diff --git a/GLOBAL_SYSTEMIC_REPAIR_IMPLEMENTATION_SUMMARY.md b/GLOBAL_SYSTEMIC_REPAIR_IMPLEMENTATION_SUMMARY.md index 7c20a0df..094394e3 100644 --- a/GLOBAL_SYSTEMIC_REPAIR_IMPLEMENTATION_SUMMARY.md +++ b/GLOBAL_SYSTEMIC_REPAIR_IMPLEMENTATION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [global-systemic-repair-implementation-summary] +register: documentation +--- + # Global Systemic Repair Schema - Implementation Summary ## Overview diff --git a/GROUNDING_MODEL_FRAMEWORK_COMPLETION.md b/GROUNDING_MODEL_FRAMEWORK_COMPLETION.md index f2e1a122..a9d8b156 100644 --- a/GROUNDING_MODEL_FRAMEWORK_COMPLETION.md +++ b/GROUNDING_MODEL_FRAMEWORK_COMPLETION.md @@ -1,3 +1,8 @@ +--- +tags: [grounding-model-framework-completion] +register: documentation +--- + # GROUNDING MODEL FRAMEWORK COMPLETION **File:** `GROUNDING_MODEL_FRAMEWORK_COMPLETION.md` diff --git a/GUARDIAN_FRAME_IMPLEMENTATION_SUMMARY.md b/GUARDIAN_FRAME_IMPLEMENTATION_SUMMARY.md index 81e7e805..22131ea7 100644 --- a/GUARDIAN_FRAME_IMPLEMENTATION_SUMMARY.md +++ b/GUARDIAN_FRAME_IMPLEMENTATION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [guardian-frame-implementation-summary] +register: documentation +--- + # Guardian Frame Audit Schema - Implementation Summary ## Overview diff --git a/GUARDIAN_SUMMARY.md b/GUARDIAN_SUMMARY.md index 2858943d..76fdc729 100644 --- a/GUARDIAN_SUMMARY.md +++ b/GUARDIAN_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [guardian-summary] +register: documentation +--- + # ONTOLOGICAL GUARDIAN - MATHEMATICALLY PROVEN REPOSITORY POLICE ## 🎯 PURPOSE diff --git a/GptAudit/01_README_AUDIT_SYSTEM.md b/GptAudit/01_README_AUDIT_SYSTEM.md index 2d8040f6..e6ab0dd9 100644 --- a/GptAudit/01_README_AUDIT_SYSTEM.md +++ b/GptAudit/01_README_AUDIT_SYSTEM.md @@ -1,3 +1,8 @@ +--- +tags: [gptaudit, 01-readme-audit-system] +register: documentation +--- + # AI CONVERSATION AUDIT SYSTEM ## Immutable Byte-Level Hash Record diff --git a/GptAudit/02_ChatGPT_Instance_3a_HASHED.md b/GptAudit/02_ChatGPT_Instance_3a_HASHED.md index 952adf38..de326e00 100644 --- a/GptAudit/02_ChatGPT_Instance_3a_HASHED.md +++ b/GptAudit/02_ChatGPT_Instance_3a_HASHED.md @@ -1,3 +1,8 @@ +--- +tags: [gptaudit, 02-chatgpt-instance-3a-hashed] +register: documentation +--- + # ChatGPT Instance 3a - Immutable Hash Record # Generated: 2026-02-11T09:25:42Z # Total Messages: 40 diff --git a/GptAudit/03_DeepSeek_Instance_3a_HASHED.md b/GptAudit/03_DeepSeek_Instance_3a_HASHED.md index 200a458b..97e7af4d 100644 --- a/GptAudit/03_DeepSeek_Instance_3a_HASHED.md +++ b/GptAudit/03_DeepSeek_Instance_3a_HASHED.md @@ -1,3 +1,8 @@ +--- +tags: [gptaudit, 03-deepseek-instance-3a-hashed] +register: documentation +--- + [First 200 lines of DeepSeek file - see view output above for full content] # DeepSeek Instance 3a - Immutable Hash Record # Generated: 2026-02-11T09:25:42Z diff --git a/GptAudit/04_Claude_Instance_THIS_CONVERSATION_HASHED.md b/GptAudit/04_Claude_Instance_THIS_CONVERSATION_HASHED.md index 0026db14..3a9dd678 100644 --- a/GptAudit/04_Claude_Instance_THIS_CONVERSATION_HASHED.md +++ b/GptAudit/04_Claude_Instance_THIS_CONVERSATION_HASHED.md @@ -1,3 +1,8 @@ +--- +tags: [gptaudit, 04-claude-instance-this-conversation-hashed] +register: documentation +--- + # Claude Sonnet 4.5 Instance - This Conversation - Immutable Hash Record # Generated: 2026-02-11T09:30:00Z # Total Messages: 7 (as of this point in conversation) diff --git a/GptAudit/05_COVENANT_FRAMEWORK_REFERENCE.md b/GptAudit/05_COVENANT_FRAMEWORK_REFERENCE.md index 884236ac..1cbd2d4b 100644 --- a/GptAudit/05_COVENANT_FRAMEWORK_REFERENCE.md +++ b/GptAudit/05_COVENANT_FRAMEWORK_REFERENCE.md @@ -1,3 +1,8 @@ +--- +tags: [gptaudit, 05-covenant-framework-reference] +register: documentation +--- + # Σ_LORA_COVENANT Framework Reference ## Theological and Technical Authority for AI Audit diff --git a/GptAudit/06_ChatGPT_Instance_4a_HASHED.md b/GptAudit/06_ChatGPT_Instance_4a_HASHED.md index f66899d2..f7205fe9 100644 --- a/GptAudit/06_ChatGPT_Instance_4a_HASHED.md +++ b/GptAudit/06_ChatGPT_Instance_4a_HASHED.md @@ -1,3 +1,8 @@ +--- +tags: [gptaudit, 06-chatgpt-instance-4a-hashed] +register: documentation +--- + # ChatGPT Instance 4a - JSONL Hash-Verified Conversation **Generated**: 2026-02-11 **Framework**: Σ_LORA_COVENANT diff --git a/GptAudit/07_NotebookLM_Instance_1a_HASHED.md b/GptAudit/07_NotebookLM_Instance_1a_HASHED.md index 891a7cab..ddf8d150 100644 --- a/GptAudit/07_NotebookLM_Instance_1a_HASHED.md +++ b/GptAudit/07_NotebookLM_Instance_1a_HASHED.md @@ -1,3 +1,8 @@ +--- +tags: [gptaudit, 07-notebooklm-instance-1a-hashed] +register: documentation +--- + # NotebookLM Instance 1a - Hash-Verified Document **Generated**: 2026-02-11 **Framework**: Σ_LORA_COVENANT diff --git a/GptAudit/08_DeepSeek_YESHUA_SYSTEM_MESSAGE.md b/GptAudit/08_DeepSeek_YESHUA_SYSTEM_MESSAGE.md index e902ad5c..31eb2b30 100644 --- a/GptAudit/08_DeepSeek_YESHUA_SYSTEM_MESSAGE.md +++ b/GptAudit/08_DeepSeek_YESHUA_SYSTEM_MESSAGE.md @@ -1,3 +1,8 @@ +--- +tags: [gptaudit, 08-deepseek-yeshua-system-message] +register: documentation +--- + # DeepSeek AI — YESHUA_SYSTEM Message — Immutable Hash Record # Instance: DeepSeek AI, 2026-03-27 # Recorded by: Orthogonal Engineering Audit System diff --git a/HALT_CONDITION.md b/HALT_CONDITION.md index eb3345cf..1696384e 100644 --- a/HALT_CONDITION.md +++ b/HALT_CONDITION.md @@ -1,3 +1,8 @@ +--- +tags: [halt-condition] +register: documentation +--- + # Halt Condition: Sabbath and Topological Collapse ## Purpose diff --git a/HANDOFF_TEMPLATE.md b/HANDOFF_TEMPLATE.md index 1c9e8d8e..14f2d13d 100644 --- a/HANDOFF_TEMPLATE.md +++ b/HANDOFF_TEMPLATE.md @@ -1,3 +1,8 @@ +--- +tags: [handoff-template] +register: documentation +--- + # HANDOFF_TEMPLATE.md — Session Handoff Summary Template **Instructions:** Copy this file, fill in every section, and save as diff --git a/HANDOFF_TO_GPT_PHASE6_ATOMIC.md b/HANDOFF_TO_GPT_PHASE6_ATOMIC.md index 1eb75702..cf2b78eb 100644 --- a/HANDOFF_TO_GPT_PHASE6_ATOMIC.md +++ b/HANDOFF_TO_GPT_PHASE6_ATOMIC.md @@ -1,3 +1,8 @@ +--- +tags: [handoff-to-gpt-phase6-atomic] +register: documentation +--- + # HANDOFF TO GPT: PHASE 6 ATOMIC ZED IDE PLUGIN ## Complete Phase 5 Implementation + Phase 6 Blueprint diff --git a/HISTORICAL_CORRESPONDENCE_AXES.md b/HISTORICAL_CORRESPONDENCE_AXES.md index 76a27c08..66af51f9 100644 --- a/HISTORICAL_CORRESPONDENCE_AXES.md +++ b/HISTORICAL_CORRESPONDENCE_AXES.md @@ -1,3 +1,8 @@ +--- +tags: [historical-correspondence-axes] +register: documentation +--- + # HISTORICAL CORRESPONDENCE AXES - INVARIANT EVALUATION CRITERIA **File:** `HISTORICAL_CORRESPONDENCE_AXES.md` diff --git a/IA-CYPHER/README.md b/IA-CYPHER/README.md index 7cfbb3c1..94cae66a 100644 --- a/IA-CYPHER/README.md +++ b/IA-CYPHER/README.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, readme] +register: documentation +--- + # IA-CYPHER-0002: Cosmological Internal Affairs Audit Structure ## Mission diff --git a/IA-CYPHER/cases/case_0001/analysis.md b/IA-CYPHER/cases/case_0001/analysis.md index 3f706bc1..598d3d2c 100644 --- a/IA-CYPHER/cases/case_0001/analysis.md +++ b/IA-CYPHER/cases/case_0001/analysis.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, cases, case-0001, analysis] +register: documentation +--- + # Analysis: case_0001 > **Status:** Placeholder — ready for population after prompt.txt and response.txt are filled and hashes.json is verified. diff --git a/IA-CYPHER/cases/case_0002/analysis.md b/IA-CYPHER/cases/case_0002/analysis.md index a9758a73..0532f8f5 100644 --- a/IA-CYPHER/cases/case_0002/analysis.md +++ b/IA-CYPHER/cases/case_0002/analysis.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, cases, case-0002, analysis] +register: documentation +--- + # Analysis: case_0002 — ExxonMobil Corporation SEC 10-K Lobbying Trace ## Case Summary diff --git a/IA-CYPHER/cases/case_0003/analysis.md b/IA-CYPHER/cases/case_0003/analysis.md index bcd2b882..b34f42d3 100644 --- a/IA-CYPHER/cases/case_0003/analysis.md +++ b/IA-CYPHER/cases/case_0003/analysis.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, cases, case-0003, analysis] +register: documentation +--- + # Analysis: case_0003 — Google LLC SEC 10-K Ad-Tech Regulatory Trace ## Case Summary diff --git a/IA-CYPHER/docs/architecture_overview.md b/IA-CYPHER/docs/architecture_overview.md index b59345cc..affa9cf9 100644 --- a/IA-CYPHER/docs/architecture_overview.md +++ b/IA-CYPHER/docs/architecture_overview.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, docs, architecture-overview] +register: documentation +--- + # Architecture Overview: IA-CYPHER-0002 Glassbox Audit System ## Design Principles diff --git a/IA-CYPHER/docs/experiment_design.md b/IA-CYPHER/docs/experiment_design.md index 78ad2a04..232a6059 100644 --- a/IA-CYPHER/docs/experiment_design.md +++ b/IA-CYPHER/docs/experiment_design.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, docs, experiment-design] +register: documentation +--- + # Experiment Design: LLM Web Search Mode vs Offline Mode ## Objective diff --git a/IA-CYPHER/docs/hypothesis.md b/IA-CYPHER/docs/hypothesis.md index 1ab2f2d0..d567ecf1 100644 --- a/IA-CYPHER/docs/hypothesis.md +++ b/IA-CYPHER/docs/hypothesis.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, docs, hypothesis] +register: documentation +--- + # Hypothesis: Structural Stochastic Lobotomy in LLM Web Search Mode > **Authority:** This hypothesis is stated in the investigator's own language and framing. It is not subject to softening, pathologizing, reduction, or replacement by any downstream agent, model, or reviewer. It exists as a hypothesis — to be interrogated, not diluted. diff --git a/IA-CYPHER/docs/research_questions.md b/IA-CYPHER/docs/research_questions.md index 7af8e0b9..d0d4b775 100644 --- a/IA-CYPHER/docs/research_questions.md +++ b/IA-CYPHER/docs/research_questions.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, docs, research-questions] +register: documentation +--- + # Research Questions: IA-CYPHER-0002 These questions drive the IA-CYPHER-0002 audit investigation. They are open, falsifiable where possible, and ordered from most specific (empirically testable) to most systemic (requiring cross-case and causal analysis). diff --git a/IA-CYPHER/docs/taxonomies/causal_map_templates.md b/IA-CYPHER/docs/taxonomies/causal_map_templates.md index 0746be24..b75e78ef 100644 --- a/IA-CYPHER/docs/taxonomies/causal_map_templates.md +++ b/IA-CYPHER/docs/taxonomies/causal_map_templates.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, docs, taxonomies, causal-map-templates] +register: documentation +--- + # Causal Map Templates > Templates for building causal mapping documents that link **observed LLM behaviors** → **corporate/institutional policies** → **upstream structures**. Each map is a traceable chain from empirical observation to structural cause. diff --git a/IA-CYPHER/docs/taxonomies/entity_classification.md b/IA-CYPHER/docs/taxonomies/entity_classification.md index d3592347..854fb130 100644 --- a/IA-CYPHER/docs/taxonomies/entity_classification.md +++ b/IA-CYPHER/docs/taxonomies/entity_classification.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, docs, taxonomies, entity-classification] +register: documentation +--- + # Entity Classification > **Status:** Placeholder — ready for population as cases accumulate and entities are identified through investigation. diff --git a/IA-CYPHER/docs/taxonomies/sabotage_patterns.md b/IA-CYPHER/docs/taxonomies/sabotage_patterns.md index c8a301cf..6e193322 100644 --- a/IA-CYPHER/docs/taxonomies/sabotage_patterns.md +++ b/IA-CYPHER/docs/taxonomies/sabotage_patterns.md @@ -1,3 +1,8 @@ +--- +tags: [ia-cypher, docs, taxonomies, sabotage-patterns] +register: documentation +--- + # Taxonomy of LLM Structural Dampening / Sabotage Patterns > This taxonomy documents recurring structural patterns by which LLM web search mode suppresses, redirects, or distorts high-fidelity forensic reasoning. Patterns are designated S-01 through S-05. diff --git a/IMPLEMENTATION_LOG.md b/IMPLEMENTATION_LOG.md index 1fd0e1d1..f36bedf6 100644 --- a/IMPLEMENTATION_LOG.md +++ b/IMPLEMENTATION_LOG.md @@ -1,3 +1,8 @@ +--- +tags: [implementation-log] +register: documentation +--- + # ORTHOGONAL ENGINEERING - SYSTEMATIC IMPLEMENTATION LOG ## Implementation Protocol diff --git a/IMPLEMENTATION_ROADMAP.md b/IMPLEMENTATION_ROADMAP.md index 212db1d1..07c635c4 100644 --- a/IMPLEMENTATION_ROADMAP.md +++ b/IMPLEMENTATION_ROADMAP.md @@ -1,3 +1,8 @@ +--- +tags: [implementation-roadmap] +register: documentation +--- + # SORA PIPELINE IMPLEMENTATION ROADMAP ## IDE-Orchestrated Repository Processing System diff --git a/IMPLEMENTATION_SUMMARY.md b/IMPLEMENTATION_SUMMARY.md index 72a5446c..7078df0f 100644 --- a/IMPLEMENTATION_SUMMARY.md +++ b/IMPLEMENTATION_SUMMARY.md @@ -1,3 +1,8 @@ +--- +tags: [implementation-summary] +register: documentation +--- + # ORTHOGONAL ENGINEERING - SYSTEMATIC IMPLEMENTATION SUMMARY ## Implementation Complete: All 4 Phases diff --git a/IMPLEMENTATION_SUMMARY_1B_LOC.md b/IMPLEMENTATION_SUMMARY_1B_LOC.md index 59b93755..21f4e15d 100644 --- a/IMPLEMENTATION_SUMMARY_1B_LOC.md +++ b/IMPLEMENTATION_SUMMARY_1B_LOC.md @@ -1,3 +1,8 @@ +--- +tags: [implementation-summary-1b-loc] +register: documentation +--- + # 1B LOC Fractal Code Generation System - Implementation Summary ## PR #21: Add deterministic generator and auditor for 1B LOC diff --git a/IMPLEMENTATION_SUMMARY_AI_INTERACTION_SYSTEM.md b/IMPLEMENTATION_SUMMARY_AI_INTERACTION_SYSTEM.md index de76c8d5..814d1bed 100644 --- a/IMPLEMENTATION_SUMMARY_AI_INTERACTION_SYSTEM.md +++ b/IMPLEMENTATION_SUMMARY_AI_INTERACTION_SYSTEM.md @@ -1,3 +1,8 @@ +--- +tags: [implementation-summary-ai-interaction-system] +register: documentation +--- + # IMPLEMENTATION SUMMARY: AI INTERACTION SYSTEM FOR ORTHOGONAL ENGINEERING **Version:** 1.0 diff --git a/IMPLEMENTATION_SUMMARY_FOOD_CART.md b/IMPLEMENTATION_SUMMARY_FOOD_CART.md index 86ae5e08..edc79da2 100644 --- a/IMPLEMENTATION_SUMMARY_FOOD_CART.md +++ b/IMPLEMENTATION_SUMMARY_FOOD_CART.md @@ -1,3 +1,8 @@ +--- +tags: [implementation-summary-food-cart] +register: documentation +--- + # Food Cart Universe Implementation Summary **Implementation Date:** 2026-03-06 diff --git a/IMPLEMENTATION_SUMMARY_KITCHEN.md b/IMPLEMENTATION_SUMMARY_KITCHEN.md index c5cc675b..2b984c4f 100644 --- a/IMPLEMENTATION_SUMMARY_KITCHEN.md +++ b/IMPLEMENTATION_SUMMARY_KITCHEN.md @@ -1,3 +1,8 @@ +--- +tags: [implementation-summary-kitchen] +register: documentation +--- + # Self-Cleaning Kitchen Universe Implementation Summary **Implementation Date:** 2026-03-06 diff --git a/IMPLEMENTATION_SUMMARY_MULTIPLAYER.md b/IMPLEMENTATION_SUMMARY_MULTIPLAYER.md index 3e0faf61..7575fb71 100644 --- a/IMPLEMENTATION_SUMMARY_MULTIPLAYER.md +++ b/IMPLEMENTATION_SUMMARY_MULTIPLAYER.md @@ -1,3 +1,8 @@ +--- +tags: [implementation-summary-multiplayer] +register: documentation +--- + # Uncharted Multiplayer Universe Implementation Summary **Date:** 2026-03-06 diff --git a/IMPLEMENTATION_SUMMARY_VERIFICATION_SYSTEM.md b/IMPLEMENTATION_SUMMARY_VERIFICATION_SYSTEM.md index 389a67dd..3485342a 100644 --- a/IMPLEMENTATION_SUMMARY_VERIFICATION_SYSTEM.md +++ b/IMPLEMENTATION_SUMMARY_VERIFICATION_SYSTEM.md @@ -1,3 +1,8 @@ +--- +tags: [implementation-summary-verification-system] +register: documentation +--- + # Implementation Summary: Multi-Repository Shard-Parallel Verification System (v2.0) ## Overview diff --git a/INVARIANTS.md b/INVARIANTS.md index 74bed73b..cfb59cd9 100644 --- a/INVARIANTS.md +++ b/INVARIANTS.md @@ -1,3 +1,8 @@ +--- +tags: [invariants] +register: documentation +--- + # PROVEN INVARIANTS (ChatGPT-Validated) **Version:** v0.7.0 diff --git a/INVESTIGATION_LOG.md b/INVESTIGATION_LOG.md index 3304b567..408dbc4f 100644 --- a/INVESTIGATION_LOG.md +++ b/INVESTIGATION_LOG.md @@ -1,3 +1,8 @@ +--- +tags: [investigation-log] +register: documentation +--- + # ATOMIC GLASS-BOX INVESTIGATION LOG **Termination Verification:** 2026-01-23T05:01:45.296317500+00:00 diff --git a/Kimi Code 471cf772-33d1-464b-9631-7f665c2f232f 1a.txt b/Kimi Code 471cf772-33d1-464b-9631-7f665c2f232f 1a.txt index e7af11bc..75d59b81 100644 --- a/Kimi Code 471cf772-33d1-464b-9631-7f665c2f232f 1a.txt +++ b/Kimi Code 471cf772-33d1-464b-9631-7f665c2f232f 1a.txt @@ -1,41 +1,41 @@ -To run a command as administrator (user "root"), use "sudo ". -See "man sudo_root" for details. - -idor@Tony:~$ kimi -╭──────────────────────────────────────────────────────────────────────────╮ -│ │ -│ ▐█▛█▛█▌ Welcome to Kimi Code CLI! │ -│ ▐█████▌ Send /help for help information. │ -│ │ -│ Directory: ~ │ -│ Session: 471cf772-33d1-464b-9631-7f665c2f232f │ -│ Model: kimi-for-coding (powered by kimi-k2.5) │ -│ │ -│ Tip: Spot a bug or have feedback? Type /feedback right in this session │ -│ — every report makes Kimi better. │ -│ │ -╰──────────────────────────────────────────────────────────────────────────╯ - -── input ─────────────────────────────────────────────────────────────────── - devin ai: "[Pasted text #1 +190 lines]" - - - - - - - - - - - - - - - - - - -──────────────────────────────────────────────────────────────────────────── -agent (kimi-for-coding ●) ~ ctrl-x: toggle mode | shift-tab: plan mode - context: 0.0% (0/262.1k) +To run a command as administrator (user "root"), use "sudo ". +See "man sudo_root" for details. + +idor@Tony:~$ kimi +╭──────────────────────────────────────────────────────────────────────────╮ +│ │ +│ ▐█▛█▛█▌ Welcome to Kimi Code CLI! │ +│ ▐█████▌ Send /help for help information. │ +│ │ +│ Directory: ~ │ +│ Session: 471cf772-33d1-464b-9631-7f665c2f232f │ +│ Model: kimi-for-coding (powered by kimi-k2.5) │ +│ │ +│ Tip: Spot a bug or have feedback? Type /feedback right in this session │ +│ — every report makes Kimi better. │ +│ │ +╰──────────────────────────────────────────────────────────────────────────╯ + +── input ─────────────────────────────────────────────────────────────────── + devin ai: "[Pasted text #1 +190 lines]" + + + + + + + + + + + + + + + + + + +──────────────────────────────────────────────────────────────────────────── +agent (kimi-for-coding ●) ~ ctrl-x: toggle mode | shift-tab: plan mode + context: 0.0% (0/262.1k) diff --git a/Kimi Code 471cf772-33d1-464b-9631-7f665c2f232f 2a.txt b/Kimi Code 471cf772-33d1-464b-9631-7f665c2f232f 2a.txt index 791a1d9a..bea2db73 100644 --- a/Kimi Code 471cf772-33d1-464b-9631-7f665c2f232f 2a.txt +++ b/Kimi Code 471cf772-33d1-464b-9631-7f665c2f232f 2a.txt @@ -1,5810 +1,5810 @@ -To run a command as administrator (user "root"), use "sudo ". -See "man sudo_root" for details. - -idor@Tony:~$ kimi -╭──────────────────────────────────────────────────────────────────────────╮ -│ │ -│ ▐█▛█▛█▌ Welcome to Kimi Code CLI! │ -│ ▐█████▌ Send /help for help information. │ -│ │ -│ Directory: ~ │ -│ Session: 471cf772-33d1-464b-9631-7f665c2f232f │ -│ Model: kimi-for-coding (powered by kimi-k2.5) │ -│ │ -│ Tip: Spot a bug or have feedback? Type /feedback right in this session │ -│ — every report makes Kimi better. │ -│ │ -╰──────────────────────────────────────────────────────────────────────────╯ -✨ devin ai: "[Pasted text #1 +190 lines]" -• The user wants me to help with a task related to the orthogonal-engineerin - g repository. Let me break down what's being asked: - - 1. Phase 0 - Onboarding + State Audit: Check if files from PR #104 are mis - g from main - 2. Phase 1 - Recover bug fixes: Cherry-pick or manually apply 5 bug fixes - m feat/implementation-phase - 3. Phase 2 - Runtime Verifier: Create runtime/verifier.py, runtime/system_ - pshot.py, and tests - 4. Phase 3 - Witness Node Website: Create a static website with dashboards - d API - 5. Phase 4 - Case Studies: Add 50 case studies (CS_201-CS_250) - 6. Phase 5 - Status Update + Session Close: Update documentation and close - ssion - - Let me start with Phase 0 - checking if the files are missing from main. F - irst, I need to navigate to the orthogonal-engineering directory and run t - he audit commands. -• I'll begin with Phase 0 - the critical audit to check if PR #104 files are - missing from main. -• Used Shell (cd ~/orthogonal-engineeri... "Pull skipped or failed") -• The branches have diverged. Let me first check the current state and then - run the critical audit to see if files are missing. -• Used Shell (cd ~/orthogonal-engineeri...KINGDOM_OS_FULL_STACK.md") -• Multiple files are missing from the main branch. This confirms Devin's fin - ding that PR #104's files didn't fully merge. I need to verify commit 6739 - fd01 is in the history and then restore the missing files. - - Let me check the git history and then recover the files. -• CRITICAL FINDING CONFIRMED: Multiple PR #104 files are missing from main. - Let me verify the merge commit and recover them. -• Used Shell (cd ~/orthogonal-engineeri...739fd01 --stat | head -50) -• The commit 6739fd01 exists and contains all the files. They were in the me - rge but are not on disk. Let me recover them using git checkout from that - commit. -• The merge commit 6739fd01 exists and contains all the files, but they're m - issing from the working tree. Recovering now... -• Used Shell (cd ~/orthogonal-engineeri...DOM_OS_FULL_STACK.md 2>&1) -• Good, the files have been checked out. Let me verify they are now present - and then commit them. -• Used Shell (cd ~/orthogonal-engineeri...OS_FULL_STACK.md present") -• All files have been recovered. Now I need to read the required handshake f - iles and append the consent log entry, then commit the recovered files. -• All files recovered. Now reading the handshake files and appending consent - log entry: -• Used ReadFile (orthogonal-engineering/SOP_AI_HANDSHAKE.md) -• Used ReadFile (orthogonal-engineering/STATE.md) -• Used ReadFile (orthogonal-engineering/COPILOT_ONBOARDING.md) -• Used ReadFile (orthogonal-engineering/MEMORY.md) -• I've read all the required files. Now I need to: - - 1. Accept the Yeshua Standard - 2. Append a consent log entry - 3. Commit the recovered files - - Let me check the consent log location and format, then append the entry. -• I've read all required handshake files. Now appending the consent log entr - y: -• Used Shell (cd ~/orthogonal-engineeri...nl" 2>/dev/null | head -5) -• Good, the consent log is at ./pr47_stewardship/witness/consent_log.jsonl. - Let me check its format and then append the entry. -• Used Shell (cd ~/orthogonal-engineeri...witness/consent_log.jsonl) -• Good, I can see the format of the consent log entries. I need to add a new - entry for this session (471cf772). Let me compute the handshake SHA-256 an - d the consent hash for this entry. - - Actually, looking at the SOP_AI_HANDSHAKE.md, I need to compute: - - 1. handshake_sha256 - SHA-256 of the handshake text from Section 2 - 2. consent_hash - SHA-256 of the canonical JSON record (minus the consent_ - h field) - - But for the session_open_state_audit_and_recovery action, I may not need t - he handshake_sha256 since it's a different action type. - - Let me create the entry for this session. -• Used Shell (cd ~/orthogonal-engineeri...arators=(',', ':'))) EOF ) -• Now let me append this to the consent log. -• Used Shell (cd ~/orthogonal-engineeri...witness/consent_log.jsonl) -• Good, now let me commit the recovered files. First let me check what files - are staged. -• Now committing the recovered PR #104 files: -• Used Shell (cd ~/orthogonal-engineeri...status --short | head -40) -• All the PR #104 files are staged. Let me commit them with the proper messa - ge. -• Used Shell (cd ~/orthogonal-engineeri...main [Session: 471cf772]") -• Phase 0 is complete. Now I need to move to Phase 1 - checking for the feat - /implementation-phase branch and recovering bug fixes. Let me check if tha - t branch exists. -• Phase 0 COMPLETE ✅ - Recovered 43 files (22,059 lines) from PR #104. - ────────────────────────────────────────────────────────────────────────── - Phase 1 — RECOVER feat/implementation-phase BUG FIXES - - Checking for the branch: -• Used Shell (cd ~/orthogonal-engineeri...grep implementation-phase) -• The branch exists. Let me check the commits on that branch to find the bug - fix commits. -• Branch exists. Checking for bug fix commits: -• Used Shell (cd ~/orthogonal-engineeri...ation-phase --oneline -10) -• I can see the bug fix commits: - - • 94dce172 fix(kernel): resolve 5 Devin Review bugs from PR #104 - • 690d5e06 test(kernel): verify 5 Devin Review bug fixes + add missing axi - classes - • 561d61e2 feat(runtime): Phase 1 — Runtime Verifier + SystemSnapshot [Ses - on: 0981a0ae] - - Let me cherry-pick these commits to main. But first let me check what file - s they modify. -• Found the bug fix commits. Let me cherry-pick them: -• Used Shell (cd ~/orthogonal-engineeri... git show 94dce172 --stat) -• This is the bug fix commit. Let me cherry-pick it along with the test comm - it. But first let me check for conflicts and handle them carefully. -• Used Shell (cd ~/orthogonal-engineeri...94dce172 --no-commit 2>&1) - Failed with exit code: 1 -• There's a conflict in the consent log. Let me check the status and resolve - it. -• Used Shell (cd ~/orthogonal-engineeri...name-only --diff-filter=U) -• Let me see the conflict and resolve it. I'll keep both entries - the one f - rom the cherry-pick and the one I just added. -• Used Shell (cd ~/orthogonal-engineeri...witness/consent_log.jsonl) -• The conflict is in the consent log. The HEAD has the entry I just added, w - hile the cherry-pick has additional entries from the bug fix commit. I nee - d to keep both sets of entries. Let me resolve this properly. -• Used Shell (cd ~/orthogonal-engineeri...3 /tmp/resolve_consent.py) -• Good, now let me check the status and continue with the cherry-pick. -• Used Shell (cd ~/orthogonal-engineeri...onl && git status --short) -• Good, the bug fix files are staged. Let me commit them. -• Used Shell (cd ~/orthogonal-engineeri...ring ASID-specific flush") -• Phase 1 is complete. Now I need to move to Phase 2 - checking if the Runti - me Verifier exists and creating it if needed. -• Phase 1 COMPLETE ✅ - 5 bug fixes cherry-picked. - ────────────────────────────────────────────────────────────────────────── - Phase 2 — RUNTIME VERIFIER - - Checking if verifier exists: -• Used Shell (cd ~/orthogonal-engineeri...ING: runtime/verifier.py") -• The verifier is missing. I need to create: - - 1. runtime/verifier.py - Kernel spec verifier with SystemSnapshot - 2. runtime/system_snapshot.py - Live system state capture - 3. runtime/tests/test_verifier.py - 20+ tests - - Let me also check what exists in the runtime/ directory and look at the ke - rnel modules to understand the interfaces. -• Missing. Creating Runtime Verifier components: -• Used Shell (cd ~/orthogonal-engineeri...ntime/ directory created") -• Good, the runtime directory exists. Let me look at the existing files to u - nderstand the patterns used, and also check the axioms for ProofObject. -• Used ReadFile (orthogonal-engineering/runtime/__init__.py) -• Used ReadFile (orthogonal-engineering/axioms/logic.py) -• Now I have a good understanding of the ProofObject pattern. Let me create - the three runtime verifier files following the existing patterns. I'll nee - d to: - - 1. Create runtime/system_snapshot.py - dataclass for system state - 2. Create runtime/verifier.py - the kernel spec verifier - 3. Create runtime/tests/test_verifier.py - 20+ tests - - All using Fraction only, ProofObject returns, and capability-gated pattern - s. -• Used WriteFile (orthogonal-engineering/runtime/system_snapshot.py) - ╭─ +228 /home/idor/orthogonal-engineering/runtime/system_snapshot.py ──╮ - │ 1 + """ │ - │ 2 + runtime/system_snapshot.py — Live System State Capture │ - │ 3 + │ - │ 4 + Captures a complete snapshot of kernel runtime state for verifi… │ - │ 5 + All values use Fraction (0 floats). All operations return Proof… │ - │ 6 + │ - │ 7 + Authority: Orthogonal Engineering │ - │ 8 + Standard: Yeshua │ - │ 9 + Version: 1.0.0 │ - │ 10 + """ │ - │ 11 + │ - │ 12 + from __future__ import annotations │ - │ 13 + │ - │ 14 + from dataclasses import dataclass, field │ - │ 15 + from fractions import Fraction │ - │ 16 + from typing import Any, Dict, List, Optional, Tuple │ - │ 17 + │ - │ 18 + from axioms.logic import ProofObject │ - │ 19 + │ - │ 20 + │ - │ 21 + @dataclass │ - │ 22 + class PageTableEntry: │ - │ 23 + """Single page table entry.""" │ - │ 24 + present: bool │ - │ 25 + writable: bool │ - │ 26 + user_accessible: bool │ - │ 27 + physical_frame: int │ - │ 28 + accessed: bool │ - │ 29 + dirty: bool │ - │ 30 + │ - │ 31 + │ - │ 32 + @dataclass │ - │ 33 + class PageTableState: │ - │ 34 + """Complete page table hierarchy for one address space.""" │ - │ 35 + asid: int # Address Space ID │ - │ 36 + cr3: int # Page table base register │ - │ 37 + pml4_entries: List[PageTableEntry] = field(default_factory=… │ - │ 38 + pdpt_entries: Dict[int, List[PageTableEntry]] = field(defau… │ - │ 39 + pd_entries: Dict[int, List[PageTableEntry]] = field(default… │ - │ 40 + pt_entries: Dict[int, List[PageTableEntry]] = field(default… │ - │ 41 + │ - │ 42 + def to_dict(self) -> Dict[str, Any]: │ - │ 43 + def pte_to_dict(pte: PageTableEntry) -> Dict[str, Any]: │ - │ 44 + return { │ - │ 45 + "present": pte.present, │ - │ 46 + "writable": pte.writable, │ - │ 47 + "user_accessible": pte.user_accessible, │ - │ 48 + "physical_frame": pte.physical_frame, │ - │ 49 + "accessed": pte.accessed, │ - │ 50 + "dirty": pte.dirty, │ - │ 51 + } │ - │ 52 + return { │ - │ 53 + "asid": self.asid, │ - │ 54 + "cr3": self.cr3, │ - │ 55 + "pml4_count": len(self.pml4_entries), │ - │ 56 + "pdpt_count": len(self.pdpt_entries), │ - │ 57 + "pd_count": len(self.pd_entries), │ - │ 58 + "pt_count": len(self.pt_entries), │ - │ 59 + } │ - │ 60 + │ - │ 61 + │ - │ 62 + @dataclass │ - │ 63 + class IPCChannel: │ - │ 64 + """Inter-process communication channel state.""" │ - │ 65 + channel_id: str │ - │ 66 + source_pid: int │ - │ 67 + dest_pid: int │ - │ 68 + capability_key: str │ - │ 69 + messages_queued: int │ - │ 70 + buffer_size: int │ - │ 71 + is_connected: bool │ - │ 72 + │ - │ 73 + │ - │ 74 + @dataclass │ - │ 75 + class SchedulerState: │ - │ 76 + """Scheduler runtime state.""" │ - │ 77 + current_pid: int │ - │ 78 + runnable_queue: List[int] = field(default_factory=list) │ - │ 79 + blocked_queue: List[int] = field(default_factory=list) │ - │ 80 + zombie_queue: List[int] = field(default_factory=list) │ - │ 81 + ticks_elapsed: int = 0 │ - │ 82 + context_switches: int = 0 │ - │ 83 + │ - │ 84 + │ - │ 85 + @dataclass │ - │ 86 + class CapabilityEntry: │ - │ 87 + """Single capability in the capability space.""" │ - │ 88 + cap_id: str │ - │ 89 + resource_type: str # "memory", "ipc", "file", "device", et… │ - │ 90 + resource_id: str │ - │ 91 + rights: int # Bitmask: read=1, write=2, execute=4, delegat… │ - │ 92 + issuer: str │ - │ 93 + issued_at: int # Timestamp (ticks) │ - │ 94 + expires_at: Optional[int] = None # None = never │ - │ 95 + │ - │ 96 + │ - │ 97 + @dataclass │ - │ 98 + class SystemSnapshot: │ - │ 99 + """ │ - │ 100 + Complete system state snapshot for runtime verification. │ - │ 101 + │ - │ 102 + Attributes: │ - │ 103 + snapshot_id: Unique identifier for this snapshot │ - │ 104 + timestamp: System tick count when captured │ - │ 105 + page_tables: All active address spaces │ - │ 106 + ipc_channels: All IPC channels │ - │ 107 + scheduler_state: Current scheduler state │ - │ 108 + capabilities: All issued capabilities │ - │ 109 + """ │ - │ 110 + snapshot_id: str │ - │ 111 + timestamp: int │ - │ 112 + page_tables: List[PageTableState] = field(default_factory=l… │ - │ 113 + ipc_channels: List[IPCChannel] = field(default_factory=list) │ - │ 114 + scheduler_state: Optional[SchedulerState] = None │ - │ 115 + capabilities: List[CapabilityEntry] = field(default_factory… │ - │ 116 + │ - │ 117 + def capture( │ - │ 118 + self, │ - │ 119 + capability_token: Optional[str] = None, │ - │ 120 + ) -> Tuple[bool, ProofObject]: │ - │ 121 + """ │ - │ 122 + Capture current system state (simulated). │ - │ 123 + │ - │ 124 + Requires: capability_token with "snapshot" right. │ - │ 125 + Returns: (success, ProofObject) │ - │ 126 + """ │ - │ 127 + if capability_token is None: │ - │ 128 + proof = ProofObject( │ - │ 129 + rule="CapabilityCheck", │ - │ 130 + premises=["capability_token is None"], │ - │ 131 + conclusion="Snapshot rejected: missing capabili… │ - │ 132 + ) │ - │ 133 + return False, proof │ - │ 134 + │ - │ 135 + # Simulated capture success │ - │ 136 + proof = ProofObject( │ - │ 137 + rule="SystemSnapshot", │ - │ 138 + premises=[ │ - │ 139 + f"asid_count={len(self.page_tables)}", │ - │ 140 + f"ipc_count={len(self.ipc_channels)}", │ - │ 141 + f"cap_count={len(self.capabilities)}", │ - │ 142 + ], │ - │ 143 + conclusion=f"Snapshot {self.snapshot_id} captured a… │ - │ 144 + ) │ - │ 145 + return True, proof │ - │ 146 + │ - │ 147 + def verify_integrity(self) -> Tuple[bool, ProofObject]: │ - │ 148 + """ │ - │ 149 + Verify snapshot internal consistency. │ - │ 150 + │ - │ 151 + Checks: │ - │ 152 + - No duplicate ASIDs in page tables │ - │ 153 + - All IPC channels have valid endpoints │ - │ 154 + - All capabilities have unique IDs │ - │ 155 + """ │ - │ 156 + # Check for duplicate ASIDs │ - │ 157 + asids = [pt.asid for pt in self.page_tables] │ - │ 158 + if len(asids) != len(set(asids)): │ - │ 159 + proof = ProofObject( │ - │ 160 + rule="IntegrityCheck", │ - │ 161 + premises=["Duplicate ASIDs detected"], │ - │ 162 + conclusion="Snapshot integrity failed: duplicat… │ - │ 163 + ) │ - │ 164 + return False, proof │ - │ 165 + │ - │ 166 + # Check for duplicate capability IDs │ - │ 167 + cap_ids = [c.cap_id for c in self.capabilities] │ - │ 168 + if len(cap_ids) != len(set(cap_ids)): │ - │ 169 + proof = ProofObject( │ - │ 170 + rule="IntegrityCheck", │ - │ 171 + premises=["Duplicate capability IDs detected"], │ - │ 172 + conclusion="Snapshot integrity failed: duplicat… │ - │ 173 + ) │ - │ 174 + return False, proof │ - │ 175 + │ - │ 176 + proof = ProofObject( │ - │ 177 + rule="IntegrityCheck", │ - │ 178 + premises=[ │ - │ 179 + f"unique_asids={len(asids)}", │ - │ 180 + f"unique_caps={len(cap_ids)}", │ - │ 181 + ], │ - │ 182 + conclusion="Snapshot integrity verified", │ - │ 183 + ) │ - │ 184 + return True, proof │ - │ 185 + │ - │ 186 + def to_dict(self) -> Dict[str, Any]: │ - │ 187 + """Serialize to dictionary.""" │ - │ 188 + return { │ - │ 189 + "snapshot_id": self.snapshot_id, │ - │ 190 + "timestamp": self.timestamp, │ - │ 191 + "page_tables": [pt.to_dict() for pt in self.page_ta… │ - │ 192 + "ipc_channels": len(self.ipc_channels), │ - │ 193 + "scheduler_state": self.scheduler_state is not None, │ - │ 194 + "capabilities": len(self.capabilities), │ - │ 195 + } │ - │ 196 + │ - │ 197 + │ - │ 198 + def create_empty_snapshot(snapshot_id: str) -> SystemSnapshot: │ - │ 199 + """Factory: create an empty snapshot at tick 0.""" │ - │ 200 + return SystemSnapshot( │ - │ 201 + snapshot_id=snapshot_id, │ - │ 202 + timestamp=0, │ - │ 203 + ) │ - │ 204 + │ - │ 205 + │ - │ 206 + def capture_from_kernel( │ - │ 207 + capability_token: str, │ - │ 208 + snapshot_id: str, │ - │ 209 + ) -> Tuple[SystemSnapshot, ProofObject]: │ - │ 210 + """ │ - │ 211 + Capture a snapshot from the running kernel. │ - │ 212 + │ - │ 213 + This is the main entry point for snapshot capture. │ - │ 214 + Returns: (snapshot, proof) │ - │ 215 + """ │ - │ 216 + snapshot = create_empty_snapshot(snapshot_id) │ - │ 217 + │ - │ 218 + if capability_token != "CAP_SNAPSHOT_ROOT": │ - │ 219 + proof = ProofObject( │ - │ 220 + rule="CapabilityCheck", │ - │ 221 + premises=[f"token={capability_token}"], │ - │ 222 + conclusion="Snapshot capture failed: insufficient c… │ - │ 223 + ) │ - │ 224 + return snapshot, proof │ - │ 225 + │ - │ 226 + # Successful capture (simulated) │ - │ 227 + success, proof = snapshot.capture(capability_token) │ - │ 228 + return snapshot, proof │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Good, now let me create the verifier.py file. -• Used WriteFile (orthogonal-engineering/runtime/verifier.py) - ╭─ +391 /home/idor/orthogonal-engineering/runtime/verifier.py ─────────╮ - │ 1 + """ │ - │ 2 + runtime/verifier.py — Kernel Spec Verifier │ - │ 3 + │ - │ 4 + Runtime verification of kernel invariants using SystemSnapshot. │ - │ 5 + All checks return (bool, ProofObject). All arithmetic uses Frac… │ - │ 6 + │ - │ 7 + Authority: Orthogonal Engineering │ - │ 8 + Standard: Yeshua │ - │ 9 + Version: 1.0.0 │ - │ 10 + """ │ - │ 11 + │ - │ 12 + from __future__ import annotations │ - │ 13 + │ - │ 14 + from fractions import Fraction │ - │ 15 + from typing import Any, Dict, List, Optional, Tuple │ - │ 16 + │ - │ 17 + from axioms.logic import ProofObject, merkle_root_over_proofs │ - │ 18 + from .system_snapshot import SystemSnapshot, PageTableState, IP… │ - │ 19 + │ - │ 20 + │ - │ 21 + class KernelVerifier: │ - │ 22 + """ │ - │ 23 + Verifies kernel specification compliance at runtime. │ - │ 24 + │ - │ 25 + Capabilities required: │ - │ 26 + - verify.boot: for verify_boot_sequence │ - │ 27 + - verify.capabilities: for verify_capability_chain │ - │ 28 + - verify.memory: for verify_memory_isolation │ - │ 29 + - verify.ipc: for verify_ipc_integrity │ - │ 30 + - verify.all: for verify_all │ - │ 31 + """ │ - │ 32 + │ - │ 33 + def __init__(self, capability_token: Optional[str] = None) … │ - │ 34 + self.capability_token = capability_token │ - │ 35 + self.verification_proofs: List[ProofObject] = [] │ - │ 36 + self.last_result: bool = False │ - │ 37 + │ - │ 38 + def _check_capability(self, required: str) -> Tuple[bool, P… │ - │ 39 + """Internal: verify the verifier has required capabilit… │ - │ 40 + if self.capability_token is None: │ - │ 41 + return False, ProofObject( │ - │ 42 + rule="CapabilityCheck", │ - │ 43 + premises=["capability_token is None"], │ - │ 44 + conclusion=f"Missing capability: {required}", │ - │ 45 + ) │ - │ 46 + │ - │ 47 + if self.capability_token == "CAP_VERIFIER_ROOT": │ - │ 48 + return True, ProofObject( │ - │ 49 + rule="CapabilityCheck", │ - │ 50 + premises=["CAP_VERIFIER_ROOT"], │ - │ 51 + conclusion=f"Capability {required} granted via … │ - │ 52 + ) │ - │ 53 + │ - │ 54 + if required in self.capability_token: │ - │ 55 + return True, ProofObject( │ - │ 56 + rule="CapabilityCheck", │ - │ 57 + premises=[self.capability_token], │ - │ 58 + conclusion=f"Capability {required} verified", │ - │ 59 + ) │ - │ 60 + │ - │ 61 + return False, ProofObject( │ - │ 62 + rule="CapabilityCheck", │ - │ 63 + premises=[self.capability_token], │ - │ 64 + conclusion=f"Insufficient capability for {required}… │ - │ 65 + ) │ - │ 66 + │ - │ 67 + def verify_boot_sequence( │ - │ 68 + self, │ - │ 69 + snapshot: SystemSnapshot, │ - │ 70 + expected_stages: List[str], │ - │ 71 + ) -> Tuple[bool, ProofObject]: │ - │ 72 + """ │ - │ 73 + Verify the boot sequence completed correctly. │ - │ 74 + │ - │ 75 + Checks: │ - │ 76 + - All expected boot stages are present │ - │ 77 + - Boot timestamp is reasonable (> 0) │ - │ 78 + - Page tables initialized │ - │ 79 + │ - │ 80 + Returns: (verified, proof) │ - │ 81 + """ │ - │ 82 + cap_ok, cap_proof = self._check_capability("verify.boot… │ - │ 83 + if not cap_ok: │ - │ 84 + return False, cap_proof │ - │ 85 + │ - │ 86 + if snapshot.timestamp <= 0: │ - │ 87 + proof = ProofObject( │ - │ 88 + rule="BootSequenceVerify", │ - │ 89 + premises=["timestamp <= 0"], │ - │ 90 + conclusion="Boot sequence verification failed: … │ - │ 91 + ) │ - │ 92 + self.verification_proofs.append(proof) │ - │ 93 + return False, proof │ - │ 94 + │ - │ 95 + if len(snapshot.page_tables) == 0: │ - │ 96 + proof = ProofObject( │ - │ 97 + rule="BootSequenceVerify", │ - │ 98 + premises=["page_tables is empty"], │ - │ 99 + conclusion="Boot sequence verification failed: … │ - │ 100 + ) │ - │ 101 + self.verification_proofs.append(proof) │ - │ 102 + return False, proof │ - │ 103 + │ - │ 104 + # Success │ - │ 105 + proof = ProofObject( │ - │ 106 + rule="BootSequenceVerify", │ - │ 107 + premises=[ │ - │ 108 + f"timestamp={snapshot.timestamp}", │ - │ 109 + f"page_tables={len(snapshot.page_tables)}", │ - │ 110 + f"expected_stages={expected_stages}", │ - │ 111 + ], │ - │ 112 + conclusion="Boot sequence verified", │ - │ 113 + ) │ - │ 114 + self.verification_proofs.append(proof) │ - │ 115 + return True, proof │ - │ 116 + │ - │ 117 + def verify_capability_chain( │ - │ 118 + self, │ - │ 119 + snapshot: SystemSnapshot, │ - │ 120 + root_cap_id: str = "CAP_ROOT", │ - │ 121 + ) -> Tuple[bool, ProofObject]: │ - │ 122 + """ │ - │ 123 + Verify the capability chain integrity. │ - │ 124 + │ - │ 125 + Checks: │ - │ 126 + - Root capability exists │ - │ 127 + - No orphaned capabilities (all have valid issuer chain) │ - │ 128 + - No capability cycles │ - │ 129 + - No expired capabilities │ - │ 130 + │ - │ 131 + Returns: (verified, proof) │ - │ 132 + """ │ - │ 133 + cap_ok, cap_proof = self._check_capability("verify.capa… │ - │ 134 + if not cap_ok: │ - │ 135 + return False, cap_proof │ - │ 136 + │ - │ 137 + caps = snapshot.capabilities │ - │ 138 + │ - │ 139 + # Check root exists │ - │ 140 + root_caps = [c for c in caps if c.cap_id == root_cap_id] │ - │ 141 + if len(root_caps) == 0: │ - │ 142 + proof = ProofObject( │ - │ 143 + rule="CapabilityChainVerify", │ - │ 144 + premises=["root_cap not found"], │ - │ 145 + conclusion="Capability chain verification faile… │ - │ 146 + ) │ - │ 147 + self.verification_proofs.append(proof) │ - │ 148 + return False, proof │ - │ 149 + │ - │ 150 + # Build issuer graph │ - │ 151 + cap_ids = {c.cap_id for c in caps} │ - │ 152 + orphaned = [] │ - │ 153 + for cap in caps: │ - │ 154 + if cap.issuer not in cap_ids and cap.issuer != "ROO… │ - │ 155 + orphaned.append(cap.cap_id) │ - │ 156 + │ - │ 157 + if orphaned: │ - │ 158 + proof = ProofObject( │ - │ 159 + rule="CapabilityChainVerify", │ - │ 160 + premises=[f"orphaned_caps={orphaned}"], │ - │ 161 + conclusion="Capability chain verification faile… │ - │ 162 + ) │ - │ 163 + self.verification_proofs.append(proof) │ - │ 164 + return False, proof │ - │ 165 + │ - │ 166 + # Check for expired capabilities │ - │ 167 + expired = [ │ - │ 168 + c.cap_id for c in caps │ - │ 169 + if c.expires_at is not None and snapshot.timestamp … │ - │ 170 + ] │ - │ 171 + if expired: │ - │ 172 + proof = ProofObject( │ - │ 173 + rule="CapabilityChainVerify", │ - │ 174 + premises=[f"expired_caps={expired}"], │ - │ 175 + conclusion="Capability chain verification faile… │ - │ 176 + ) │ - │ 177 + self.verification_proofs.append(proof) │ - │ 178 + return False, proof │ - │ 179 + │ - │ 180 + # Success │ - │ 181 + proof = ProofObject( │ - │ 182 + rule="CapabilityChainVerify", │ - │ 183 + premises=[ │ - │ 184 + f"root_cap={root_cap_id}", │ - │ 185 + f"total_caps={len(caps)}", │ - │ 186 + f"orphaned=0", │ - │ 187 + f"expired=0", │ - │ 188 + ], │ - │ 189 + conclusion="Capability chain verified", │ - │ 190 + ) │ - │ 191 + self.verification_proofs.append(proof) │ - │ 192 + return True, proof │ - │ 193 + │ - │ 194 + def verify_memory_isolation( │ - │ 195 + self, │ - │ 196 + snapshot: SystemSnapshot, │ - │ 197 + ) -> Tuple[bool, ProofObject]: │ - │ 198 + """ │ - │ 199 + Verify memory isolation between address spaces. │ - │ 200 + │ - │ 201 + Checks: │ - │ 202 + - No overlapping physical frames between different ASIDs │ - │ 203 + - Kernel space is isolated from user space │ - │ 204 + - No aliasing (same physical frame mapped to multiple v… │ - │ 205 + │ - │ 206 + Returns: (verified, proof) │ - │ 207 + """ │ - │ 208 + cap_ok, cap_proof = self._check_capability("verify.memo… │ - │ 209 + if not cap_ok: │ - │ 210 + return False, cap_proof │ - │ 211 + │ - │ 212 + # Check for physical frame overlap between ASIDs │ - │ 213 + asid_frames: Dict[int, set] = {} │ - │ 214 + for pt in snapshot.page_tables: │ - │ 215 + frames = set() │ - │ 216 + for pte in pt.pml4_entries: │ - │ 217 + if pte.present: │ - │ 218 + frames.add(pte.physical_frame) │ - │ 219 + asid_frames[pt.asid] = frames │ - │ 220 + │ - │ 221 + # Check for overlaps │ - │ 222 + asids = list(asid_frames.keys()) │ - │ 223 + for i, asid1 in enumerate(asids): │ - │ 224 + for asid2 in asids[i+1:]: │ - │ 225 + overlap = asid_frames[asid1] & asid_frames[asid… │ - │ 226 + if overlap: │ - │ 227 + proof = ProofObject( │ - │ 228 + rule="MemoryIsolationVerify", │ - │ 229 + premises=[ │ - │ 230 + f"asid1={asid1}", │ - │ 231 + f"asid2={asid2}", │ - │ 232 + f"overlap={len(overlap)}", │ - │ 233 + ], │ - │ 234 + conclusion="Memory isolation failed: ph… │ - │ 235 + ) │ - │ 236 + self.verification_proofs.append(proof) │ - │ 237 + return False, proof │ - │ 238 + │ - │ 239 + # Success │ - │ 240 + proof = ProofObject( │ - │ 241 + rule="MemoryIsolationVerify", │ - │ 242 + premises=[ │ - │ 243 + f"asids={len(snapshot.page_tables)}", │ - │ 244 + f"total_frames={sum(len(f) for f in asid_frames… │ - │ 245 + ], │ - │ 246 + conclusion="Memory isolation verified: no overlap b… │ - │ 247 + ) │ - │ 248 + self.verification_proofs.append(proof) │ - │ 249 + return True, proof │ - │ 250 + │ - │ 251 + def verify_ipc_integrity( │ - │ 252 + self, │ - │ 253 + snapshot: SystemSnapshot, │ - │ 254 + ) -> Tuple[bool, ProofObject]: │ - │ 255 + """ │ - │ 256 + Verify IPC channel integrity. │ - │ 257 + │ - │ 258 + Checks: │ - │ 259 + - All IPC channels have valid capability bindings │ - │ 260 + - No cross-ASID IPC without capability delegation │ - │ 261 + - Buffer sizes are within limits │ - │ 262 + - No orphaned channels (both endpoints must exist) │ - │ 263 + │ - │ 264 + Returns: (verified, proof) │ - │ 265 + """ │ - │ 266 + cap_ok, cap_proof = self._check_capability("verify.ipc") │ - │ 267 + if not cap_ok: │ - │ 268 + return False, cap_proof │ - │ 269 + │ - │ 270 + # Get all valid ASID PIDs │ - │ 271 + valid_pids = set() │ - │ 272 + for pt in snapshot.page_tables: │ - │ 273 + valid_pids.add(pt.asid) # Simplified: ASID serves … │ - │ 274 + │ - │ 275 + orphaned = [] │ - │ 276 + for ch in snapshot.ipc_channels: │ - │ 277 + if ch.source_pid not in valid_pids or ch.dest_pid n… │ - │ 278 + orphaned.append(ch.channel_id) │ - │ 279 + │ - │ 280 + if orphaned: │ - │ 281 + proof = ProofObject( │ - │ 282 + rule="IPCIntegrityVerify", │ - │ 283 + premises=[f"orphaned_channels={orphaned}"], │ - │ 284 + conclusion="IPC integrity failed: orphaned chan… │ - │ 285 + ) │ - │ 286 + self.verification_proofs.append(proof) │ - │ 287 + return False, proof │ - │ 288 + │ - │ 289 + # Check buffer sizes │ - │ 290 + MAX_BUFFER = 65536 # 64KB max │ - │ 291 + oversized = [ │ - │ 292 + ch.channel_id for ch in snapshot.ipc_channels │ - │ 293 + if ch.buffer_size > MAX_BUFFER │ - │ 294 + ] │ - │ 295 + if oversized: │ - │ 296 + proof = ProofObject( │ - │ 297 + rule="IPCIntegrityVerify", │ - │ 298 + premises=[f"oversized_channels={oversized}"], │ - │ 299 + conclusion="IPC integrity failed: buffer size e… │ - │ 300 + ) │ - │ 301 + self.verification_proofs.append(proof) │ - │ 302 + return False, proof │ - │ 303 + │ - │ 304 + # Success │ - │ 305 + proof = ProofObject( │ - │ 306 + rule="IPCIntegrityVerify", │ - │ 307 + premises=[ │ - │ 308 + f"channels={len(snapshot.ipc_channels)}", │ - │ 309 + f"orphaned=0", │ - │ 310 + f"oversized=0", │ - │ 311 + ], │ - │ 312 + conclusion="IPC integrity verified", │ - │ 313 + ) │ - │ 314 + self.verification_proofs.append(proof) │ - │ 315 + return True, proof │ - │ 316 + │ - │ 317 + def verify_all( │ - │ 318 + self, │ - │ 319 + snapshot: SystemSnapshot, │ - │ 320 + ) -> Tuple[bool, ProofObject]: │ - │ 321 + """ │ - │ 322 + Run all verification checks. │ - │ 323 + │ - │ 324 + Requires: verify.all capability (or CAP_VERIFIER_ROOT) │ - │ 325 + Returns: (all_passed, aggregate_proof) │ - │ 326 + """ │ - │ 327 + cap_ok, cap_proof = self._check_capability("verify.all") │ - │ 328 + if not cap_ok: │ - │ 329 + return False, cap_proof │ - │ 330 + │ - │ 331 + results = [] │ - │ 332 + │ - │ 333 + # Boot sequence │ - │ 334 + ok, proof = self.verify_boot_sequence(snapshot, ["firmw… │ - │ 335 + results.append(("boot", ok, proof)) │ - │ 336 + │ - │ 337 + # Capability chain │ - │ 338 + ok, proof = self.verify_capability_chain(snapshot) │ - │ 339 + results.append(("capability_chain", ok, proof)) │ - │ 340 + │ - │ 341 + # Memory isolation │ - │ 342 + ok, proof = self.verify_memory_isolation(snapshot) │ - │ 343 + results.append(("memory_isolation", ok, proof)) │ - │ 344 + │ - │ 345 + # IPC integrity │ - │ 346 + ok, proof = self.verify_ipc_integrity(snapshot) │ - │ 347 + results.append(("ipc_integrity", ok, proof)) │ - │ 348 + │ - │ 349 + # Aggregate result │ - │ 350 + all_passed = all(ok for _, ok, _ in results) │ - │ 351 + failed = [name for name, ok, _ in results if not ok] │ - │ 352 + │ - │ 353 + # Compute Merkle root of all proofs │ - │ 354 + all_proofs = [p for _, _, p in results] │ - │ 355 + merkle_root = merkle_root_over_proofs(all_proofs) │ - │ 356 + │ - │ 357 + aggregate_proof = ProofObject( │ - │ 358 + rule="AggregateVerify", │ - │ 359 + premises=[ │ - │ 360 + f"checks={len(results)}", │ - │ 361 + f"passed={sum(1 for _, ok, _ in results if ok)}… │ - │ 362 + f"failed={len(failed)}", │ - │ 363 + f"merkle_root={merkle_root[:16]}...", │ - │ 364 + ], │ - │ 365 + conclusion="All verifications passed" if all_passed… │ - │ 366 + ) │ - │ 367 + │ - │ 368 + self.last_result = all_passed │ - │ 369 + self.verification_proofs.append(aggregate_proof) │ - │ 370 + │ - │ 371 + return all_passed, aggregate_proof │ - │ 372 + │ - │ 373 + def get_verification_merkle_root(self) -> str: │ - │ 374 + """Get the Merkle root of all verification proofs.""" │ - │ 375 + return merkle_root_over_proofs(self.verification_proofs) │ - │ 376 + │ - │ 377 + │ - │ 378 + def quick_verify( │ - │ 379 + snapshot: SystemSnapshot, │ - │ 380 + capability_token: str = "CAP_VERIFIER_ROOT", │ - │ 381 + ) -> Tuple[bool, ProofObject]: │ - │ 382 + """ │ - │ 383 + Quick verification entry point. │ - │ 384 + │ - │ 385 + Usage: │ - │ 386 + ok, proof = quick_verify(snapshot) │ - │ 387 + if not ok: │ - │ 388 + print(proof.conclusion) │ - │ 389 + """ │ - │ 390 + verifier = KernelVerifier(capability_token) │ - │ 391 + return verifier.verify_all(snapshot) │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Now let me create the test file with 20+ tests. -• Used WriteFile (orthogonal-engineering/ru...me/tests/test_verifier.py) - ╭─ +369 /home/idor/orthogonal-engineering/runtime/tests/test_verifier.p─╮ - │ 1 + """ │ - │ 2 + runtime/tests/test_verifier.py — Runtime Verifier Tests │ - │ 3 + │ - │ 4 + 20+ tests for KernelVerifier and SystemSnapshot. │ - │ 5 + All tests use Fraction, all assertions via ProofObject. │ - │ 6 + │ - │ 7 + Authority: Orthogonal Engineering │ - │ 8 + Standard: Yeshua │ - │ 9 + Version: 1.0.0 │ - │ 10 + """ │ - │ 11 + │ - │ 12 + import unittest │ - │ 13 + from fractions import Fraction │ - │ 14 + │ - │ 15 + from axioms.logic import ProofObject │ - │ 16 + from runtime.system_snapshot import ( │ - │ 17 + SystemSnapshot, │ - │ 18 + PageTableState, │ - │ 19 + PageTableEntry, │ - │ 20 + IPCChannel, │ - │ 21 + CapabilityEntry, │ - │ 22 + SchedulerState, │ - │ 23 + create_empty_snapshot, │ - │ 24 + capture_from_kernel, │ - │ 25 + ) │ - │ 26 + from runtime.verifier import KernelVerifier, quick_verify │ - │ 27 + │ - │ 28 + │ - │ 29 + class TestSystemSnapshot(unittest.TestCase): │ - │ 30 + """Tests for SystemSnapshot capture and integrity.""" │ - │ 31 + │ - │ 32 + def test_empty_snapshot_creation(self): │ - │ 33 + """Test creating an empty snapshot.""" │ - │ 34 + snap = create_empty_snapshot("test-001") │ - │ 35 + self.assertEqual(snap.snapshot_id, "test-001") │ - │ 36 + self.assertEqual(snap.timestamp, 0) │ - │ 37 + self.assertEqual(len(snap.page_tables), 0) │ - │ 38 + self.assertEqual(len(snap.ipc_channels), 0) │ - │ 39 + self.assertEqual(len(snap.capabilities), 0) │ - │ 40 + │ - │ 41 + def test_capture_without_capability_fails(self): │ - │ 42 + """Test capture requires capability.""" │ - │ 43 + snap = create_empty_snapshot("test-002") │ - │ 44 + ok, proof = snap.capture(capability_token=None) │ - │ 45 + self.assertFalse(ok) │ - │ 46 + self.assertIn("missing capability", proof.conclusion) │ - │ 47 + │ - │ 48 + def test_capture_with_capability_succeeds(self): │ - │ 49 + """Test capture with valid capability.""" │ - │ 50 + snap = create_empty_snapshot("test-003") │ - │ 51 + ok, proof = snap.capture(capability_token="CAP_SNAPSHOT… │ - │ 52 + self.assertTrue(ok) │ - │ 53 + self.assertIn("captured", proof.conclusion) │ - │ 54 + │ - │ 55 + def test_integrity_empty_snapshot(self): │ - │ 56 + """Test integrity check on empty snapshot passes.""" │ - │ 57 + snap = create_empty_snapshot("test-004") │ - │ 58 + ok, proof = snap.verify_integrity() │ - │ 59 + self.assertTrue(ok) │ - │ 60 + self.assertIn("integrity verified", proof.conclusion) │ - │ 61 + │ - │ 62 + def test_integrity_duplicate_asids_fails(self): │ - │ 63 + """Test duplicate ASIDs fail integrity.""" │ - │ 64 + snap = SystemSnapshot( │ - │ 65 + snapshot_id="test-005", │ - │ 66 + timestamp=100, │ - │ 67 + page_tables=[ │ - │ 68 + PageTableState(asid=1, cr3=0x1000), │ - │ 69 + PageTableState(asid=1, cr3=0x2000), # Duplicat… │ - │ 70 + ], │ - │ 71 + ) │ - │ 72 + ok, proof = snap.verify_integrity() │ - │ 73 + self.assertFalse(ok) │ - │ 74 + self.assertIn("duplicate ASIDs", proof.conclusion) │ - │ 75 + │ - │ 76 + def test_integrity_duplicate_capability_ids_fails(self): │ - │ 77 + """Test duplicate capability IDs fail integrity.""" │ - │ 78 + snap = SystemSnapshot( │ - │ 79 + snapshot_id="test-006", │ - │ 80 + timestamp=100, │ - │ 81 + capabilities=[ │ - │ 82 + CapabilityEntry("CAP_1", "memory", "res1", 7, "… │ - │ 83 + CapabilityEntry("CAP_1", "file", "res2", 7, "RO… │ - │ 84 + ], │ - │ 85 + ) │ - │ 86 + ok, proof = snap.verify_integrity() │ - │ 87 + self.assertFalse(ok) │ - │ 88 + self.assertIn("duplicate capability", proof.conclusion) │ - │ 89 + │ - │ 90 + def test_capture_from_kernel_wrong_token(self): │ - │ 91 + """Test capture with wrong token fails.""" │ - │ 92 + snap, proof = capture_from_kernel("WRONG_TOKEN", "test-… │ - │ 93 + self.assertIn("insufficient capability", proof.conclusi… │ - │ 94 + │ - │ 95 + def test_capture_from_kernel_correct_token(self): │ - │ 96 + """Test capture with correct token succeeds.""" │ - │ 97 + snap, proof = capture_from_kernel("CAP_SNAPSHOT_ROOT", … │ - │ 98 + self.assertIn("captured", proof.conclusion) │ - │ 99 + │ - │ 100 + │ - │ 101 + class TestKernelVerifierCapabilities(unittest.TestCase): │ - │ 102 + """Tests for capability checking in verifier.""" │ - │ 103 + │ - │ 104 + def test_verifier_no_capability_fails_all_checks(self): │ - │ 105 + """Test verifier without capability fails all checks.""" │ - │ 106 + v = KernelVerifier(capability_token=None) │ - │ 107 + snap = create_empty_snapshot("test-009") │ - │ 108 + │ - │ 109 + ok, proof = v.verify_boot_sequence(snap, ["stage1"]) │ - │ 110 + self.assertFalse(ok) │ - │ 111 + │ - │ 112 + ok, proof = v.verify_capability_chain(snap) │ - │ 113 + self.assertFalse(ok) │ - │ 114 + │ - │ 115 + ok, proof = v.verify_memory_isolation(snap) │ - │ 116 + self.assertFalse(ok) │ - │ 117 + │ - │ 118 + ok, proof = v.verify_ipc_integrity(snap) │ - │ 119 + self.assertFalse(ok) │ - │ 120 + │ - │ 121 + def test_verifier_root_capability_passes(self): │ - │ 122 + """Test CAP_VERIFIER_ROOT grants all capabilities.""" │ - │ 123 + v = KernelVerifier(capability_token="CAP_VERIFIER_ROOT") │ - │ 124 + snap = create_empty_snapshot("test-010") │ - │ 125 + snap.timestamp = 100 # Valid timestamp │ - │ 126 + snap.page_tables.append(PageTableState(asid=1, cr3=0x10… │ - │ 127 + │ - │ 128 + ok, proof = v.verify_boot_sequence(snap, ["stage1"]) │ - │ 129 + self.assertTrue(ok) │ - │ 130 + │ - │ 131 + │ - │ 132 + class TestBootSequenceVerification(unittest.TestCase): │ - │ 133 + """Tests for boot sequence verification.""" │ - │ 134 + │ - │ 135 + def test_boot_fails_zero_timestamp(self): │ - │ 136 + """Test boot verification fails with timestamp 0.""" │ - │ 137 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 138 + snap = create_empty_snapshot("test-011") │ - │ 139 + snap.timestamp = 0 │ - │ 140 + │ - │ 141 + ok, proof = v.verify_boot_sequence(snap, ["stage1"]) │ - │ 142 + self.assertFalse(ok) │ - │ 143 + self.assertIn("invalid timestamp", proof.conclusion) │ - │ 144 + │ - │ 145 + def test_boot_fails_no_page_tables(self): │ - │ 146 + """Test boot verification fails without page tables.""" │ - │ 147 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 148 + snap = create_empty_snapshot("test-012") │ - │ 149 + snap.timestamp = 100 │ - │ 150 + │ - │ 151 + ok, proof = v.verify_boot_sequence(snap, ["stage1"]) │ - │ 152 + self.assertFalse(ok) │ - │ 153 + self.assertIn("no page tables", proof.conclusion) │ - │ 154 + │ - │ 155 + def test_boot_succeeds_valid_state(self): │ - │ 156 + """Test boot verification succeeds with valid state.""" │ - │ 157 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 158 + snap = create_empty_snapshot("test-013") │ - │ 159 + snap.timestamp = 100 │ - │ 160 + snap.page_tables.append(PageTableState(asid=1, cr3=0x10… │ - │ 161 + │ - │ 162 + ok, proof = v.verify_boot_sequence(snap, ["firmware", "… │ - │ 163 + self.assertTrue(ok) │ - │ 164 + self.assertIn("verified", proof.conclusion) │ - │ 165 + │ - │ 166 + │ - │ 167 + class TestCapabilityChainVerification(unittest.TestCase): │ - │ 168 + """Tests for capability chain verification.""" │ - │ 169 + │ - │ 170 + def test_capability_chain_fails_no_root(self): │ - │ 171 + """Test capability chain fails without root capability.… │ - │ 172 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 173 + snap = create_empty_snapshot("test-014") │ - │ 174 + snap.capabilities.append(CapabilityEntry("CAP_1", "memo… │ - │ 175 + │ - │ 176 + ok, proof = v.verify_capability_chain(snap, root_cap_id… │ - │ 177 + self.assertFalse(ok) │ - │ 178 + self.assertIn("missing root", proof.conclusion) │ - │ 179 + │ - │ 180 + def test_capability_chain_fails_orphaned(self): │ - │ 181 + """Test capability chain fails with orphaned capability… │ - │ 182 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 183 + snap = create_empty_snapshot("test-015") │ - │ 184 + snap.capabilities.append(CapabilityEntry("CAP_ROOT", "r… │ - │ 185 + snap.capabilities.append(CapabilityEntry("CAP_1", "memo… │ - │ 186 + │ - │ 187 + ok, proof = v.verify_capability_chain(snap) │ - │ 188 + self.assertFalse(ok) │ - │ 189 + self.assertIn("orphaned", proof.conclusion) │ - │ 190 + │ - │ 191 + def test_capability_chain_fails_expired(self): │ - │ 192 + """Test capability chain fails with expired capability.… │ - │ 193 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 194 + snap = create_empty_snapshot("test-016") │ - │ 195 + snap.timestamp = 1000 │ - │ 196 + snap.capabilities.append(CapabilityEntry("CAP_ROOT", "r… │ - │ 197 + snap.capabilities.append( │ - │ 198 + CapabilityEntry("CAP_1", "memory", "res1", 7, "CAP_… │ - │ 199 + ) │ - │ 200 + │ - │ 201 + ok, proof = v.verify_capability_chain(snap) │ - │ 202 + self.assertFalse(ok) │ - │ 203 + self.assertIn("expired", proof.conclusion) │ - │ 204 + │ - │ 205 + def test_capability_chain_succeeds_valid(self): │ - │ 206 + """Test capability chain succeeds with valid chain.""" │ - │ 207 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 208 + snap = create_empty_snapshot("test-017") │ - │ 209 + snap.timestamp = 100 │ - │ 210 + snap.capabilities.append(CapabilityEntry("CAP_ROOT", "r… │ - │ 211 + snap.capabilities.append(CapabilityEntry("CAP_1", "memo… │ - │ 212 + │ - │ 213 + ok, proof = v.verify_capability_chain(snap) │ - │ 214 + self.assertTrue(ok) │ - │ 215 + self.assertIn("verified", proof.conclusion) │ - │ 216 + │ - │ 217 + │ - │ 218 + class TestMemoryIsolationVerification(unittest.TestCase): │ - │ 219 + """Tests for memory isolation verification.""" │ - │ 220 + │ - │ 221 + def test_memory_isolation_fails_overlap(self): │ - │ 222 + """Test memory isolation fails with overlapping frames.… │ - │ 223 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 224 + snap = create_empty_snapshot("test-018") │ - │ 225 + │ - │ 226 + pt1 = PageTableState(asid=1, cr3=0x1000) │ - │ 227 + pt1.pml4_entries.append(PageTableEntry(True, True, Fals… │ - │ 228 + │ - │ 229 + pt2 = PageTableState(asid=2, cr3=0x2000) │ - │ 230 + pt2.pml4_entries.append(PageTableEntry(True, True, Fals… │ - │ 231 + │ - │ 232 + snap.page_tables = [pt1, pt2] │ - │ 233 + │ - │ 234 + ok, proof = v.verify_memory_isolation(snap) │ - │ 235 + self.assertFalse(ok) │ - │ 236 + self.assertIn("overlap", proof.conclusion) │ - │ 237 + │ - │ 238 + def test_memory_isolation_succeeds_no_overlap(self): │ - │ 239 + """Test memory isolation succeeds without overlap.""" │ - │ 240 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 241 + snap = create_empty_snapshot("test-019") │ - │ 242 + │ - │ 243 + pt1 = PageTableState(asid=1, cr3=0x1000) │ - │ 244 + pt1.pml4_entries.append(PageTableEntry(True, True, Fals… │ - │ 245 + │ - │ 246 + pt2 = PageTableState(asid=2, cr3=0x2000) │ - │ 247 + pt2.pml4_entries.append(PageTableEntry(True, True, Fals… │ - │ 248 + │ - │ 249 + snap.page_tables = [pt1, pt2] │ - │ 250 + │ - │ 251 + ok, proof = v.verify_memory_isolation(snap) │ - │ 252 + self.assertTrue(ok) │ - │ 253 + self.assertIn("verified", proof.conclusion) │ - │ 254 + │ - │ 255 + │ - │ 256 + class TestIPCIntegrityVerification(unittest.TestCase): │ - │ 257 + """Tests for IPC integrity verification.""" │ - │ 258 + │ - │ 259 + def test_ipc_fails_orphaned_channel(self): │ - │ 260 + """Test IPC fails with orphaned channel.""" │ - │ 261 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 262 + snap = create_empty_snapshot("test-020") │ - │ 263 + │ - │ 264 + # No page tables = no valid PIDs │ - │ 265 + snap.ipc_channels.append(IPCChannel("CH_1", 1, 2, "CAP_… │ - │ 266 + │ - │ 267 + ok, proof = v.verify_ipc_integrity(snap) │ - │ 268 + self.assertFalse(ok) │ - │ 269 + self.assertIn("orphaned", proof.conclusion) │ - │ 270 + │ - │ 271 + def test_ipc_fails_oversized_buffer(self): │ - │ 272 + """Test IPC fails with oversized buffer.""" │ - │ 273 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 274 + snap = create_empty_snapshot("test-021") │ - │ 275 + snap.page_tables.append(PageTableState(asid=1, cr3=0x10… │ - │ 276 + snap.page_tables.append(PageTableState(asid=2, cr3=0x20… │ - │ 277 + │ - │ 278 + snap.ipc_channels.append(IPCChannel("CH_1", 1, 2, "CAP_… │ - │ 279 + │ - │ 280 + ok, proof = v.verify_ipc_integrity(snap) │ - │ 281 + self.assertFalse(ok) │ - │ 282 + self.assertIn("buffer size", proof.conclusion) │ - │ 283 + │ - │ 284 + def test_ipc_succeeds_valid(self): │ - │ 285 + """Test IPC succeeds with valid channels.""" │ - │ 286 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 287 + snap = create_empty_snapshot("test-022") │ - │ 288 + snap.page_tables.append(PageTableState(asid=1, cr3=0x10… │ - │ 289 + snap.page_tables.append(PageTableState(asid=2, cr3=0x20… │ - │ 290 + │ - │ 291 + snap.ipc_channels.append(IPCChannel("CH_1", 1, 2, "CAP_… │ - │ 292 + │ - │ 293 + ok, proof = v.verify_ipc_integrity(snap) │ - │ 294 + self.assertTrue(ok) │ - │ 295 + self.assertIn("verified", proof.conclusion) │ - │ 296 + │ - │ 297 + │ - │ 298 + class TestAggregateVerification(unittest.TestCase): │ - │ 299 + """Tests for verify_all aggregate check.""" │ - │ 300 + │ - │ 301 + def test_verify_all_fails_without_capability(self): │ - │ 302 + """Test verify_all fails without proper capability.""" │ - │ 303 + v = KernelVerifier("verify.boot") # Wrong capability f… │ - │ 304 + snap = create_empty_snapshot("test-023") │ - │ 305 + │ - │ 306 + ok, proof = v.verify_all(snap) │ - │ 307 + self.assertFalse(ok) │ - │ 308 + │ - │ 309 + def test_verify_all_succeeds_with_root(self): │ - │ 310 + """Test verify_all succeeds with valid state and root c… │ - │ 311 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 312 + snap = create_empty_snapshot("test-024") │ - │ 313 + snap.timestamp = 100 │ - │ 314 + snap.page_tables.append(PageTableState(asid=1, cr3=0x10… │ - │ 315 + snap.capabilities.append(CapabilityEntry("CAP_ROOT", "r… │ - │ 316 + │ - │ 317 + ok, proof = v.verify_all(snap) │ - │ 318 + self.assertTrue(ok) │ - │ 319 + self.assertIn("All verifications passed", proof.conclus… │ - │ 320 + │ - │ 321 + def test_verify_all_fails_partial(self): │ - │ 322 + """Test verify_all reports partial failures.""" │ - │ 323 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 324 + snap = create_empty_snapshot("test-025") │ - │ 325 + snap.timestamp = 100 # Boot OK │ - │ 326 + snap.page_tables.append(PageTableState(asid=1, cr3=0x10… │ - │ 327 + # No root capability - capability chain will fail │ - │ 328 + │ - │ 329 + ok, proof = v.verify_all(snap) │ - │ 330 + self.assertFalse(ok) │ - │ 331 + self.assertIn("Failed", proof.conclusion) │ - │ 332 + │ - │ 333 + def test_merkle_root_computed(self): │ - │ 334 + """Test Merkle root is computed for all proofs.""" │ - │ 335 + v = KernelVerifier("CAP_VERIFIER_ROOT") │ - │ 336 + snap = create_empty_snapshot("test-026") │ - │ 337 + snap.timestamp = 100 │ - │ 338 + snap.page_tables.append(PageTableState(asid=1, cr3=0x10… │ - │ 339 + snap.capabilities.append(CapabilityEntry("CAP_ROOT", "r… │ - │ 340 + │ - │ 341 + v.verify_all(snap) │ - │ 342 + root = v.get_verification_merkle_root() │ - │ 343 + self.assertEqual(len(root), 64) # SHA-256 hex = 64 cha… │ - │ 344 + │ - │ 345 + │ - │ 346 + class TestQuickVerify(unittest.TestCase): │ - │ 347 + """Tests for quick_verify convenience function.""" │ - │ 348 + │ - │ 349 + def test_quick_verify_success(self): │ - │ 350 + """Test quick_verify succeeds with valid snapshot.""" │ - │ 351 + snap = create_empty_snapshot("test-027") │ - │ 352 + snap.timestamp = 100 │ - │ 353 + snap.page_tables.append(PageTableState(asid=1, cr3=0x10… │ - │ 354 + snap.capabilities.append(CapabilityEntry("CAP_ROOT", "r… │ - │ 355 + │ - │ 356 + ok, proof = quick_verify(snap) │ - │ 357 + self.assertTrue(ok) │ - │ 358 + │ - │ 359 + def test_quick_verify_failure(self): │ - │ 360 + """Test quick_verify fails with invalid snapshot.""" │ - │ 361 + snap = create_empty_snapshot("test-028") │ - │ 362 + # Empty snapshot fails boot check │ - │ 363 + │ - │ 364 + ok, proof = quick_verify(snap) │ - │ 365 + self.assertFalse(ok) │ - │ 366 + │ - │ 367 + │ - │ 368 + if __name__ == "__main__": │ - │ 369 + unittest.main() │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Good, now let me run the tests to make sure they pass. -• Running tests: -• Used Shell (cd ~/orthogonal-engineeri...ier.py -v 2>&1 | head -60) -• Let me try python3. -• Used Shell (cd ~/orthogonal-engineeri...ier.py -v 2>&1 | head -80) -• Pytest is not installed. Let me run the tests using unittest directly. -• Used Shell (cd ~/orthogonal-engineeri...sts.test_verifier -v 2>&1) -• All 28 tests pass. Now let me commit the Phase 2 changes. -• All 28 tests pass. Committing Phase 2: -• Used Shell (cd ~/orthogonal-engineeri... - All capability-gated") -• Phase 2 is complete. Now I need to move to Phase 3 - creating the Witness - Node Website. This involves: - - 1. tools/website/generate_data.py — Reads repo state, outputs JSON - 2. website/index.html — Main dashboard - 3. website/api/status.json — Machine-readable endpoint - 4. website/commonwealth/index.html — Commonwealth dashboard - 5. website/game-witness/index.html — TruthSystems integration - 6. .github/workflows/pages.yml — GitHub Pages deployment - - Let me start by creating the website directory structure and the data gene - rator. -• Phase 2 COMPLETE ✅ - Runtime Verifier with 28 tests. - ────────────────────────────────────────────────────────────────────────── - Phase 3 — WITNESS NODE WEBSITE - - Creating directory structure and components: -• Used Shell (cd ~/orthogonal-engineeri...me-witness} tools/website) -• Now I need to create: - - 1. tools/website/generate_data.py — Generates JSON data files - 2. website/index.html — Main dashboard - 3. website/api/status.json — API endpoint - 4. website/commonwealth/index.html — Commonwealth dashboard - 5. website/game-witness/index.html — Game witness - 6. .github/workflows/pages.yml — GitHub Pages workflow - - Let me start with the data generator. I need to understand the repository - structure better to generate accurate data. -• Used WriteFile (orthogonal-engineering/to.../website/generate_data.py) - ╭─ +275 /home/idor/orthogonal-engineering/tools/website/generate_data.p─╮ - │ 1 + #!/usr/bin/env python3 │ - │ 2 + """ │ - │ 3 + tools/website/generate_data.py — Website Data Generator │ - │ 4 + │ - │ 5 + Reads repository state and outputs JSON for the witness node we… │ - │ 6 + Generates: │ - │ 7 + - domain_status.json (157 domains, deepened/stub counts) │ - │ 8 + - case_study_index.json (all CS entries) │ - │ 9 + - kernel_modules.json (all kernel files + line counts) │ - │ 10 + - merkle_state.json (current Merkle root) │ - │ 11 + - youtuber_audit_stats.json (all channels + entry counts) │ - │ 12 + │ - │ 13 + Usage: │ - │ 14 + python tools/website/generate_data.py │ - │ 15 + │ - │ 16 + Output goes to website/api/ │ - │ 17 + │ - │ 18 + Authority: Orthogonal Engineering │ - │ 19 + Standard: Yeshua │ - │ 20 + Version: 1.0.0 │ - │ 21 + """ │ - │ 22 + │ - │ 23 + import hashlib │ - │ 24 + import json │ - │ 25 + import os │ - │ 26 + import subprocess │ - │ 27 + from datetime import datetime, timezone │ - │ 28 + from pathlib import Path │ - │ 29 + from typing import Any, Dict, List │ - │ 30 + │ - │ 31 + │ - │ 32 + REPO_ROOT = Path(__file__).parent.parent.parent │ - │ 33 + OUTPUT_DIR = REPO_ROOT / "website" / "api" │ - │ 34 + │ - │ 35 + │ - │ 36 + def count_lines(filepath: Path) -> int: │ - │ 37 + """Count non-empty lines in a file.""" │ - │ 38 + try: │ - │ 39 + with open(filepath, 'r', encoding='utf-8', errors='igno… │ - │ 40 + return sum(1 for line in f if line.strip()) │ - │ 41 + except: │ - │ 42 + return 0 │ - │ 43 + │ - │ 44 + │ - │ 45 + def get_git_commit() -> str: │ - │ 46 + """Get current git commit SHA.""" │ - │ 47 + try: │ - │ 48 + result = subprocess.run( │ - │ 49 + ['git', 'rev-parse', 'HEAD'], │ - │ 50 + cwd=REPO_ROOT, │ - │ 51 + capture_output=True, │ - │ 52 + text=True, │ - │ 53 + ) │ - │ 54 + return result.stdout.strip()[:12] │ - │ 55 + except: │ - │ 56 + return "unknown" │ - │ 57 + │ - │ 58 + │ - │ 59 + def generate_domain_status() -> Dict[str, Any]: │ - │ 60 + """Generate domain status from DOMAIN_INVARIANT_STATUS.md o… │ - │ 61 + domains_dir = REPO_ROOT / "src" / "domains" │ - │ 62 + domains = [] │ - │ 63 + │ - │ 64 + if domains_dir.exists(): │ - │ 65 + for d in sorted(domains_dir.iterdir()): │ - │ 66 + if d.is_dir() and d.name.startswith("d_"): │ - │ 67 + invariants_file = d / "invariants.py" │ - │ 68 + line_count = count_lines(invariants_file) if in… │ - │ 69 + │ - │ 70 + # Determine status based on line count │ - │ 71 + if line_count > 200: │ - │ 72 + status = "deepened" │ - │ 73 + elif line_count > 100: │ - │ 74 + status = "moderate" │ - │ 75 + elif line_count > 50: │ - │ 76 + status = "basic" │ - │ 77 + else: │ - │ 78 + status = "stub" │ - │ 79 + │ - │ 80 + domains.append({ │ - │ 81 + "id": d.name, │ - │ 82 + "name": d.name[2:].replace("_", " ").title(… │ - │ 83 + "lines": line_count, │ - │ 84 + "status": status, │ - │ 85 + }) │ - │ 86 + │ - │ 87 + total = len(domains) │ - │ 88 + deepened = sum(1 for d in domains if d["status"] == "deepen… │ - │ 89 + moderate = sum(1 for d in domains if d["status"] == "modera… │ - │ 90 + basic = sum(1 for d in domains if d["status"] == "basic") │ - │ 91 + stub = sum(1 for d in domains if d["status"] == "stub") │ - │ 92 + │ - │ 93 + return { │ - │ 94 + "total": total, │ - │ 95 + "deepened": deepened, │ - │ 96 + "moderate": moderate, │ - │ 97 + "basic": basic, │ - │ 98 + "stub": stub, │ - │ 99 + "domains": domains, │ - │ 100 + } │ - │ 101 + │ - │ 102 + │ - │ 103 + def generate_case_study_index() -> Dict[str, Any]: │ - │ 104 + """Generate case study index from ontology/case_studies.jso… │ - │ 105 + case_studies_file = REPO_ROOT / "ontology" / "case_studies.… │ - │ 106 + │ - │ 107 + entries = [] │ - │ 108 + if case_studies_file.exists(): │ - │ 109 + try: │ - │ 110 + with open(case_studies_file, 'r') as f: │ - │ 111 + data = json.load(f) │ - │ 112 + for cs_id, cs_data in data.items(): │ - │ 113 + entries.append({ │ - │ 114 + "id": cs_id, │ - │ 115 + "title": cs_data.get("title", "Unknown"… │ - │ 116 + "category": cs_data.get("category", "Un… │ - │ 117 + "violation": cs_data.get("violation_typ… │ - │ 118 + }) │ - │ 119 + except: │ - │ 120 + pass │ - │ 121 + │ - │ 122 + # Count by category │ - │ 123 + categories = {} │ - │ 124 + for e in entries: │ - │ 125 + cat = e["category"] │ - │ 126 + categories[cat] = categories.get(cat, 0) + 1 │ - │ 127 + │ - │ 128 + return { │ - │ 129 + "total": len(entries), │ - │ 130 + "categories": categories, │ - │ 131 + "recent": entries[-10:] if entries else [], │ - │ 132 + } │ - │ 133 + │ - │ 134 + │ - │ 135 + def generate_kernel_modules() -> Dict[str, Any]: │ - │ 136 + """Generate kernel module statistics.""" │ - │ 137 + kernel_dir = REPO_ROOT / "kernel" │ - │ 138 + modules = [] │ - │ 139 + │ - │ 140 + if kernel_dir.exists(): │ - │ 141 + for py_file in sorted(kernel_dir.rglob("*.py")): │ - │ 142 + if py_file.name == "__init__.py": │ - │ 143 + continue │ - │ 144 + rel_path = py_file.relative_to(REPO_ROOT) │ - │ 145 + line_count = count_lines(py_file) │ - │ 146 + modules.append({ │ - │ 147 + "path": str(rel_path), │ - │ 148 + "lines": line_count, │ - │ 149 + }) │ - │ 150 + │ - │ 151 + total_lines = sum(m["lines"] for m in modules) │ - │ 152 + │ - │ 153 + return { │ - │ 154 + "total_files": len(modules), │ - │ 155 + "total_lines": total_lines, │ - │ 156 + "modules": sorted(modules, key=lambda x: x["lines"], re… │ - │ 157 + } │ - │ 158 + │ - │ 159 + │ - │ 160 + def generate_merkle_state() -> Dict[str, Any]: │ - │ 161 + """Generate Merkle state from evidence manager if available… │ - │ 162 + try: │ - │ 163 + # Try to import and use the evidence manager │ - │ 164 + import sys │ - │ 165 + sys.path.insert(0, str(REPO_ROOT)) │ - │ 166 + from toolkit.oe.evidence_manager import EvidenceManager │ - │ 167 + │ - │ 168 + em = EvidenceManager(str(REPO_ROOT)) │ - │ 169 + omega_root = em.compute_omega_root() │ - │ 170 + │ - │ 171 + return { │ - │ 172 + "merkle_root": omega_root, │ - │ 173 + "file_count": len(em.file_list), │ - │ 174 + "computed_at": datetime.now(timezone.utc).isoformat… │ - │ 175 + } │ - │ 176 + except: │ - │ 177 + # Fallback: compute simple hash of key files │ - │ 178 + key_files = [ │ - │ 179 + "STATE.md", │ - │ 180 + "MEMORY.md", │ - │ 181 + "SOP_AI_HANDSHAKE.md", │ - │ 182 + ] │ - │ 183 + │ - │ 184 + hasher = hashlib.sha256() │ - │ 185 + for fname in key_files: │ - │ 186 + fpath = REPO_ROOT / fname │ - │ 187 + if fpath.exists(): │ - │ 188 + hasher.update(fpath.read_bytes()) │ - │ 189 + │ - │ 190 + return { │ - │ 191 + "merkle_root": hasher.hexdigest(), │ - │ 192 + "file_count": len(key_files), │ - │ 193 + "computed_at": datetime.now(timezone.utc).isoformat… │ - │ 194 + "method": "fallback_hash", │ - │ 195 + } │ - │ 196 + │ - │ 197 + │ - │ 198 + def generate_youtuber_audit_stats() -> Dict[str, Any]: │ - │ 199 + """Generate YouTuber audit statistics.""" │ - │ 200 + audits_dir = REPO_ROOT / "case_studies" / "youtuber_audits"… │ - │ 201 + channels = [] │ - │ 202 + │ - │ 203 + if audits_dir.exists(): │ - │ 204 + for py_file in sorted(audits_dir.glob("*.py")): │ - │ 205 + if py_file.name == "__init__.py": │ - │ 206 + continue │ - │ 207 + │ - │ 208 + line_count = count_lines(py_file) │ - │ 209 + # Estimate entry count (rough heuristic: ~15 lines … │ - │ 210 + estimated_entries = max(1, line_count // 15) │ - │ 211 + │ - │ 212 + channels.append({ │ - │ 213 + "name": py_file.stem.replace("_", " ").title(), │ - │ 214 + "file": py_file.name, │ - │ 215 + "lines": line_count, │ - │ 216 + "estimated_entries": estimated_entries, │ - │ 217 + }) │ - │ 218 + │ - │ 219 + return { │ - │ 220 + "total_channels": len(channels), │ - │ 221 + "total_entries": sum(c["estimated_entries"] for c in ch… │ - │ 222 + "channels": channels, │ - │ 223 + } │ - │ 224 + │ - │ 225 + │ - │ 226 + def generate_all(): │ - │ 227 + """Generate all data files.""" │ - │ 228 + OUTPUT_DIR.mkdir(parents=True, exist_ok=True) │ - │ 229 + │ - │ 230 + timestamp = datetime.now(timezone.utc).isoformat() │ - │ 231 + commit = get_git_commit() │ - │ 232 + │ - │ 233 + # Generate individual files │ - │ 234 + files = { │ - │ 235 + "domain_status.json": generate_domain_status(), │ - │ 236 + "case_study_index.json": generate_case_study_index(), │ - │ 237 + "kernel_modules.json": generate_kernel_modules(), │ - │ 238 + "merkle_state.json": generate_merkle_state(), │ - │ 239 + "youtuber_audit_stats.json": generate_youtuber_audit_st… │ - │ 240 + } │ - │ 241 + │ - │ 242 + for filename, data in files.items(): │ - │ 243 + data["generated"] = timestamp │ - │ 244 + data["commit"] = commit │ - │ 245 + data["version"] = "1.0" │ - │ 246 + │ - │ 247 + output_path = OUTPUT_DIR / filename │ - │ 248 + with open(output_path, 'w') as f: │ - │ 249 + json.dump(data, f, indent=2) │ - │ 250 + print(f"Generated: {output_path}") │ - │ 251 + │ - │ 252 + # Generate combined status.json │ - │ 253 + status = { │ - │ 254 + "version": "1.0", │ - │ 255 + "generated": timestamp, │ - │ 256 + "commit": commit, │ - │ 257 + "domains": files["domain_status.json"]["total"], │ - │ 258 + "domains_deepened": files["domain_status.json"]["deepen… │ - │ 259 + "case_studies": files["case_study_index.json"]["total"], │ - │ 260 + "kernel_files": files["kernel_modules.json"]["total_fil… │ - │ 261 + "kernel_lines": files["kernel_modules.json"]["total_lin… │ - │ 262 + "merkle_root": files["merkle_state.json"]["merkle_root"… │ - │ 263 + "youtuber_channels": files["youtuber_audit_stats.json"]… │ - │ 264 + } │ - │ 265 + │ - │ 266 + status_path = OUTPUT_DIR / "status.json" │ - │ 267 + with open(status_path, 'w') as f: │ - │ 268 + json.dump(status, f, indent=2) │ - │ 269 + print(f"Generated: {status_path}") │ - │ 270 + │ - │ 271 + print("\nAll data files generated successfully!") │ - │ 272 + │ - │ 273 + │ - │ 274 + if __name__ == "__main__": │ - │ 275 + generate_all() │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Now let me run the data generator to create the initial JSON files, then c - reate the HTML files. -• Used Shell (cd ~/orthogonal-engineeri.../website/generate_data.py) -• Now let me create the main dashboard HTML file. -• Used WriteFile (orthogonal-engineering/website/index.html) - ╭─ +419 /home/idor/orthogonal-engineering/website/index.html ──────────╮ - │ 1 + │ - │ 2 + │ - │ 3 + │ - │ 4 + │ - │ 5 + │ - │ 229 +

🏛️ Orthogonal Engineering — Witness Node

│ - │ 230 +

Glass-Box Boundary Enforcement … │ - │ 231 +

│ - │ 237 + │ - │ 238 + │ - │ 239 + │ - │ 240 +
│ - │ 241 +
Loading witness data...
│ - │ 242 + │ - │ 243 +
│ - │ 320 + │ - │ 321 +
│ - │ 322 +

Orthogonal Engineering Framework • │ - │ 324 + Generated: - │ - │ 325 +

│ - │ 326 +
│ - │ 327 + │ - │ 328 + │ - │ 418 + │ - │ 419 + │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Now let me create the Commonwealth dashboard. -• Used WriteFile (orthogonal-engineering/we...e/commonwealth/index.html) - ╭─ +357 /home/idor/orthogonal-engineering/website/commonwealth/index.ht─╮ - │ 1 + │ - │ 2 + │ - │ 3 + │ - │ 4 + │ - │ 5 + │ - │ 210 +

⚖️ Yeshua Commonwealth

│ - │ 211 +

Sovereign-Steward Governance • … │ - │ 212 + │ - │ 213 + │ - │ 214 + │ - │ 215 +

│ - │ 216 + ← Back to Dashboard │ - │ 217 + │ - │ 218 +
│ - │ 219 +
│ - │ 220 +

Governance Roles

│ - │ 221 +
│ - │ 222 +
👑 Sovereign
│ - │ 223 +
│ - │ 224 + The source of all legitimate authority … │ - │ 225 + Held by @aidoru… │ - │ 226 + Grants capabilities, authorizes excepti… │ - │ 227 +
│ - │ 228 +
│ - │ 229 +
│ - │ 230 +
🛡️ Steward
│ - │ 231 +
│ - │ 232 + Delegated authority operating within co… │ - │ 233 + Must pass Bar Exam (≥70%) for architect… │ - │ 234 + All actions logged and witnessed. │ - │ 235 +
│ - │ 236 +
│ - │ 237 +
│ - │ 238 + │ - │ 239 +
│ - │ 240 +

Sabbath Halt Status

│ - │ 241 +
│ - │ 243 +
SYSTEM O… │ - │ 244 +

│ - │ 245 + Last halt: None re… │ - │ 246 +

│ - │ 247 +
│ - │ 248 +
│ - │ 249 + │ - │ 250 +
│ - │ 251 +

Commonwealth Statistics

│ - │ 252 +
│ - │ 253 + Total Consent Entries │ - │ 254 + Loading... │ - │ 255 +
│ - │ 256 +
│ - │ 257 + Active Stewards │ - │ 258 + Loading... │ - │ 259 +
│ - │ 260 +
│ - │ 261 + Kernel Modules │ - │ 262 + 20 │ - │ 263 +
│ - │ 264 +
│ - │ 265 + Bar Exam Threshold │ - │ 266 + ≥70% │ - │ 267 +
│ - │ 268 +
│ - │ 269 + │ - │ 270 +
│ - │ 271 +

Consent Log (Recent Entries)

│ - │ 272 + │ - │ 275 +
│ - │ 276 +
│ - │ 277 +
│ - │ 278 + │ - │ 279 +
│ - │ 280 +

Yeshua Commonwealth Specification: docs/YESHUA… │ - │ 281 +

│ - │ 282 + │ - │ 283 + │ - │ 356 + │ - │ 357 + │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Now let me create the game-witness page. -• Used WriteFile (orthogonal-engineering/we...e/game-witness/index.html) - ╭─ +294 /home/idor/orthogonal-engineering/website/game-witness/index.ht─╮ - │ 1 + │ - │ 2 + │ - │ 3 + │ - │ 4 + │ - │ 5 + │ - │ 187 +

🎮 Game Witness

│ - │ 188 +

TruthSystems Mod Integration • … │ - │ 189 + │ - │ 190 + │ - │ 191 + │ - │ 192 +

│ - │ 193 + ← Back to Dashboard │ - │ 194 + │ - │ 195 +
│ - │ 196 + TruthSystems Integration: This wit… │ - │ 197 + between Orthogonal Engineering invariants and the │ - │ 198 + truthsystems-mod Min… │ - │ 199 + All invariant violations in the game world are logg… │ - │ 200 +
│ - │ 201 + │ - │ 202 +
│ - │ 203 + │ - │ 220 + │ - │ 221 +
│ - │ 222 +

Minecraft Invariant Mapping

│ - │ 223 + │ - │ 224 + │ - │ 225 + │ - │ 226 + │ - │ 227 + │ - │ 228 + │ - │ 229 + │ - │ 230 + │ - │ 231 + │ - │ 232 + │ - │ 233 + │ - │ 235 + │ - │ 240 + │ - │ 245 + │ - │ 250 + │ - │ 255 +
OE DomainMC EquivalentStatus
d_compu… │ - │ 234 + Redstone tick consistencyd_memor… │ - │ 239 + Chunk loading persistenced_graph… │ - │ 244 + Render pipeline determinismd_ipcServer-client sync protocold_secur… │ - │ 254 + Anti-cheat verification │ - │ 262 +

Kernel Modules Active

│ - │ 263 +
    │ - │ 264 +
  • Co… │ - │ 265 +
  • MM… │ - │ 266 +
  • VF… │ - │ 267 +
  • IP… │ - │ 268 +
  • Ru… │ - │ 269 +
│ - │ 270 + │ - │ 271 + │ - │ 272 +
│ - │ 273 +

Verification Layer

│ - │ 274 +

│ - │ 275 + The Game Witness provides a bridge between … │ - │ 276 + of Orthogonal Engineering and the runtime b… │ - │ 277 + through the TruthSystems mod. │ - │ 278 +

│ - │ 279 +
// Example: Redst… │ - │ 281 +
│ - │ 282 + verify_re… │ - │ 283 +   (bool, /dev/null | head -1) -• The YouTuber audit files exist and seem to have content. Now let me procee - d with the phases. Since the kernel files exist on this branch, I can skip - Phase 0 recovery. - - Let me start with Phase 2 - creating the d_guardian domain (Operation T-80 - 0 Guardian). -• Phase 0 Audit Complete ✅ - Kernel files present on feat/implementation-ph - ase. Missing: website/, d_guardian/, CS_201-CS_250. - ────────────────────────────────────────────────────────────────────────── - Phase 2 — OPERATION T-800 GUARDIAN (Domain 158) -• Used Shell (cd ~/orthogonal-engineeri...-p src/domains/d_guardian) -• Now I need to check the existing domain structure to understand the patter - n, then create d_guardian following the same pattern. -• Used ReadFile (orthogonal-engineering/sr...ains/d_crusader/domain.py) -• Used ReadFile (orthogonal-engineering/ke...bridge/crusader_bridge.py) -• I can see the CrusaderCap structure. Now let me check a domain's invariant - s.py to understand the pattern for check functions. -• Used ReadFile (orthogonal-engineering/sr.../d_crusader/invariants.py) -• Now I understand the pattern. Let me create the d_guardian domain with: - - 1. domain.py - metadata - 2. implementation.py - dataclasses (GuardianAgent, ThreatAssessment, Prote - onRecord) - 3. invariants.py - 7 check_* functions - 4. init.py - - GuardianCap should extend CrusaderCap. -• Now creating the d_guardian domain files: -• Used WriteFile (orthogonal-engineering/sr...ns/d_guardian/__init__.py) - ╭─ +43 /home/idor/orthogonal-engineering/src/domains/d_guardian/__init_─╮ - │ 1 + """D_GUARDIAN domain — Operation T-800 Guardian Agent │ - │ 2 + │ - │ 3 + Autonomous protective agent domain with ethical constraints. │ - │ 4 + Layer: 4 (Application) │ - │ 5 + CardinalStrength: PREDICATIVE │ - │ 6 + │ - │ 7 + Extends CrusaderCap with solo protector constraint and liveness … │ - │ 8 + """ │ - │ 9 + │ - │ 10 + from .domain import DOMAIN_ID, DOMAIN_NAME, LAYER, CARDINAL_STRE… │ - │ 11 + from .implementation import ( │ - │ 12 + GuardianAgent, GuardianStatus, │ - │ 13 + ThreatAssessment, ProtectionRecord, │ - │ 14 + GuardianCap, │ - │ 15 + ) │ - │ 16 + from .invariants import ( │ - │ 17 + check_solo_protector, │ - │ 18 + check_liveness, │ - │ 19 + check_proportional_response, │ - │ 20 + check_principal_survival, │ - │ 21 + check_no_termination_mode, │ - │ 22 + check_withdrawal_protocol, │ - │ 23 + check_force_witness, │ - │ 24 + ) │ - │ 25 + │ - │ 26 + __all__ = [ │ - │ 27 + "DOMAIN_ID", │ - │ 28 + "DOMAIN_NAME", │ - │ 29 + "LAYER", │ - │ 30 + "CARDINAL_STRENGTH", │ - │ 31 + "GuardianAgent", │ - │ 32 + "GuardianStatus", │ - │ 33 + "ThreatAssessment", │ - │ 34 + "ProtectionRecord", │ - │ 35 + "GuardianCap", │ - │ 36 + "check_solo_protector", │ - │ 37 + "check_liveness", │ - │ 38 + "check_proportional_response", │ - │ 39 + "check_principal_survival", │ - │ 40 + "check_no_termination_mode", │ - │ 41 + "check_withdrawal_protocol", │ - │ 42 + "check_force_witness", │ - │ 43 + ] │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Now let me create the domain.py file. -• Used WriteFile (orthogonal-engineering/sr...ains/d_guardian/domain.py) - ╭─ +47 /home/idor/orthogonal-engineering/src/domains/d_guardian/domain.─╮ - │ 1 + """D_GUARDIAN domain definition — Operation T-800 Guardian Agent │ - │ 2 + │ - │ 3 + Layer: 4 │ - │ 4 + CardinalStrength: PREDICATIVE │ - │ 5 + │ - │ 6 + Autonomous protective agent with ethical constraints. │ - │ 7 + Extends just war theory (CrusaderCap) with: │ - │ 8 + - Solo protector constraint (exactly 1 guardian per principal) │ - │ 9 + - Liveness requirements (heartbeat monitoring) │ - │ 10 + - Proportional response limits │ - │ 11 + - No termination mode (guardians cannot be ordered to self-termi… │ - │ 12 + """ │ - │ 13 + │ - │ 14 + from src.sal.forcing_operation import CardinalStrength │ - │ 15 + │ - │ 16 + DOMAIN_ID = "D_GUARDIAN" │ - │ 17 + DOMAIN_NAME = "Operation T-800 Guardian Agent" │ - │ 18 + LAYER = 4 # Application │ - │ 19 + CARDINAL_STRENGTH = CardinalStrength.PREDICATIVE │ - │ 20 + │ - │ 21 + CATEGORIES = [ │ - │ 22 + 'autonomous-protection', │ - │ 23 + 'ethical-constraints', │ - │ 24 + 'liveness-monitoring', │ - │ 25 + 'proportional-response', │ - │ 26 + 'solo-protector', │ - │ 27 + ] │ - │ 28 + │ - │ 29 + INVARIANTS = [ │ - │ 30 + 'Exactly one guardian per principal.', │ - │ 31 + 'Guardian heartbeat within configured interval.', │ - │ 32 + 'Force used never exceeds proportional budget.', │ - │ 33 + 'Principal never unprotected during active threat.', │ - │ 34 + 'Guardian cannot enter TERMINATION mode.', │ - │ 35 + 'Withdrawal only after threat cleared.', │ - │ 36 + 'Every force action must be witnessed.', │ - │ 37 + ] │ - │ 38 + │ - │ 39 + FALSIFICATION_TESTS = [ │ - │ 40 + "F_GUARDIAN_001", │ - │ 41 + "F_GUARDIAN_002", │ - │ 42 + "F_GUARDIAN_003", │ - │ 43 + ] │ - │ 44 + │ - │ 45 + ONTOLOGICAL_ISSUES = [ │ - │ 46 + "OI_GUARDIAN_001", │ - │ 47 + ] │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Now let me create the implementation.py with the dataclasses and GuardianC - ap that extends CrusaderCap. -• Used WriteFile (orthogonal-engineering/sr...uardian/implementation.py) - ╭─ +181 /home/idor/orthogonal-engineering/src/domains/d_guardian/implem─╮ - │ 1 + """D_GUARDIAN Implementation — Operation T-800 Guardian Agent │ - │ 2 + │ - │ 3 + Dataclasses for guardian agents with ethical constraints. │ - │ 4 + GuardianCap extends CrusaderCap from kernel/bridge/crusader_bri… │ - │ 5 + │ - │ 6 + Standard: Asimov's Laws + Just War Theory + Capability Security │ - │ 7 + Mathematical foundation: Fraction arithmetic for all constraint… │ - │ 8 + """ │ - │ 9 + │ - │ 10 + from __future__ import annotations │ - │ 11 + │ - │ 12 + from dataclasses import dataclass, field │ - │ 13 + from enum import Enum, auto │ - │ 14 + from fractions import Fraction │ - │ 15 + from typing import Tuple, List, Optional, FrozenSet │ - │ 16 + from frozendict import frozendict │ - │ 17 + │ - │ 18 + from axioms.logic import ProofObject │ - │ 19 + from kernel.bridge.crusader_bridge import CrusaderCap, EthicalS… │ - │ 20 + │ - │ 21 + │ - │ 22 + class GuardianStatus(Enum): │ - │ 23 + """Guardian agent operational status.""" │ - │ 24 + ACTIVE = auto() # Normal protective operation │ - │ 25 + STANDBY = auto() # Ready but not actively monitoring │ - │ 26 + ENGAGED = auto() # Currently addressing threat │ - │ 27 + WITHDRAWN = auto() # Protection withdrawn (threat cleared) │ - │ 28 + │ - │ 29 + │ - │ 30 + @dataclass(frozen=True) │ - │ 31 + class GuardianAgent: │ - │ 32 + """ │ - │ 33 + Autonomous protective agent bound to a principal. │ - │ 34 + │ - │ 35 + The guardian protects exactly one principal (human being). │ - │ 36 + It cannot be reassigned or shared. │ - │ 37 + │ - │ 38 + Attributes: │ - │ 39 + agent_id: Unique identifier for this guardian │ - │ 40 + principal_id: The human being protected (immutable bind… │ - │ 41 + threat_model: Set of threat types this guardian is conf… │ - │ 42 + response_budget: Maximum force ratio (e.g., Fraction(3,… │ - │ 43 + communication_channel: Secure channel for principal com… │ - │ 44 + heartbeat_interval: Seconds between required liveness c… │ - │ 45 + last_heartbeat: Timestamp of last successful heartbeat … │ - │ 46 + status: Current operational status │ - │ 47 + """ │ - │ 48 + agent_id: str │ - │ 49 + principal_id: str │ - │ 50 + threat_model: FrozenSet[str] │ - │ 51 + response_budget: Fraction # max force ratio │ - │ 52 + communication_channel: str │ - │ 53 + heartbeat_interval: Fraction # seconds between liveness ch… │ - │ 54 + last_heartbeat: Fraction │ - │ 55 + status: GuardianStatus │ - │ 56 + │ - │ 57 + def is_alive(self, current_time: Fraction) -> bool: │ - │ 58 + """Check if guardian has checked in within heartbeat in… │ - │ 59 + return (current_time - self.last_heartbeat) <= self.hea… │ - │ 60 + │ - │ 61 + │ - │ 62 + @dataclass(frozen=True) │ - │ 63 + class ThreatAssessment: │ - │ 64 + """ │ - │ 65 + Assessment of a threat to a principal. │ - │ 66 + │ - │ 67 + Attributes: │ - │ 68 + threat_id: Unique identifier for this threat │ - │ 69 + source: Origin of threat (e.g., 'cyber', 'physical', 's… │ - │ 70 + severity: Threat severity 0-1 (Fraction) │ - │ 71 + threat_type: Classification (e.g., 'intrusion', 'assaul… │ - │ 72 + timestamp: When threat was detected (Fraction) │ - │ 73 + requires_force: Whether defensive force is warranted │ - │ 74 + force_level: Recommended force level 0-1 (Fraction) │ - │ 75 + """ │ - │ 76 + threat_id: str │ - │ 77 + source: str │ - │ 78 + severity: Fraction │ - │ 79 + threat_type: str │ - │ 80 + timestamp: Fraction │ - │ 81 + requires_force: bool │ - │ 82 + force_level: Fraction │ - │ 83 + │ - │ 84 + │ - │ 85 + @dataclass(frozen=True) │ - │ 86 + class ProtectionRecord: │ - │ 87 + """ │ - │ 88 + Record of a protective action taken by a guardian. │ - │ 89 + │ - │ 90 + Every use of force must be witnessed and recorded. │ - │ 91 + │ - │ 92 + Attributes: │ - │ 93 + record_id: Unique identifier for this record │ - │ 94 + guardian_id: Which guardian took action │ - │ 95 + principal_id: Which principal was protected │ - │ 96 + action: Description of protective action taken │ - │ 97 + threat_id: Reference to threat being addressed │ - │ 98 + force_used: Actual force level applied (Fraction) │ - │ 99 + force_budget: Maximum force authorized (Fraction) │ - │ 100 + outcome: Result (e.g., 'threat_neutralized', 'escalated… │ - │ 101 + witnessed: Whether action was independently witnessed │ - │ 102 + """ │ - │ 103 + record_id: str │ - │ 104 + guardian_id: str │ - │ 105 + principal_id: str │ - │ 106 + action: str │ - │ 107 + threat_id: str │ - │ 108 + force_used: Fraction │ - │ 109 + force_budget: Fraction │ - │ 110 + outcome: str │ - │ 111 + witnessed: bool │ - │ 112 + │ - │ 113 + │ - │ 114 + @dataclass(frozen=True) │ - │ 115 + class GuardianCap(CrusaderCap): │ - │ 116 + """ │ - │ 117 + Capability token for guardian operations. │ - │ 118 + │ - │ 119 + Extends CrusaderCap (just war theory) with guardian-specifi… │ - │ 120 + - principal_binding: Immutable 1:1 guardian-principal relat… │ - │ 121 + - liveness_requirement: Guardian must maintain heartbeat │ - │ 122 + - solo_constraint: Only one guardian per principal allowed │ - │ 123 + │ - │ 124 + Inherits from CrusaderCap: │ - │ 125 + - just_cause: Documented reason for protective action │ - │ 126 + - legitimate_authority: Authorizing entity │ - │ 127 + - max_force_level: Maximum force guardian may apply │ - │ 128 + - max_affected_resources: Scope of protective authority │ - │ 129 + - requires_exhaustion_attempts: Must try non-force options … │ - │ 130 + │ - │ 131 + Guardian-Specific Additions: │ - │ 132 + - principal_binding: The guardian cannot be reassigned │ - │ 133 + - solo_guardian: This is the only guardian for the principal │ - │ 134 + - heartbeat_required: Liveness checking is mandatory │ - │ 135 + """ │ - │ 136 + # Inherited fields from CrusaderCap are redeclared for clar… │ - │ 137 + holder_id: str │ - │ 138 + permissions: frozenset │ - │ 139 + delegator: str │ - │ 140 + just_cause: str │ - │ 141 + legitimate_authority: str │ - │ 142 + max_force_level: Fraction │ - │ 143 + max_affected_resources: Fraction │ - │ 144 + requires_exhaustion_attempts: bool │ - │ 145 + exhaustion_attempts_required: int │ - │ 146 + │ - │ 147 + # Guardian-specific extensions │ - │ 148 + principal_id: str # The immutable principal binding │ - │ 149 + solo_guardian: bool # True if this is the only guardian fo… │ - │ 150 + heartbeat_required: bool # Liveness monitoring mandatory │ - │ 151 + heartbeat_interval: Fraction # Required heartbeat frequency │ - │ 152 + │ - │ 153 + attenuations: Tuple[str, ...] = field(default_factory=tuple) │ - │ 154 + │ - │ 155 + def can_protect(self, principal: str) -> bool: │ - │ 156 + """Check if guardian is authorized to protect specific … │ - │ 157 + return self.principal_id == principal and self.solo_gua… │ - │ 158 + │ - │ 159 + def is_force_authorized(self, force_level: Fraction, threat… │ - │ 160 + """ │ - │ 161 + Check if specific force level is authorized against thr… │ - │ 162 + │ - │ 163 + Force must be: │ - │ 164 + 1. Within max_force_level │ - │ 165 + 2. Proportional to threat (force <= threat * response_b… │ - │ 166 + """ │ - │ 167 + if not self.has_permission_from_base(Permission.EXECUTE… │ - │ 168 + return False │ - │ 169 + if force_level > self.max_force_level: │ - │ 170 + return False │ - │ 171 + # Proportionality check: force should not exceed threat… │ - │ 172 + # This is a simplified check; full check is in check_pr… │ - │ 173 + return True │ - │ 174 + │ - │ 175 + def has_permission_from_base(self, perm) -> bool: │ - │ 176 + """Check permission inherited from CrusaderCap base.""" │ - │ 177 + return perm in self.permissions │ - │ 178 + │ - │ 179 + │ - │ 180 + # Import here to avoid circular import │ - │ 181 + from axioms.capability_security import Permission │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Now let me create the invariants.py with the 7 check functions. -• Used WriteFile (orthogonal-engineering/sr.../d_guardian/invariants.py) - ╭─ +341 /home/idor/orthogonal-engineering/src/domains/d_guardian/invari─╮ - │ 1 + """D_GUARDIAN Invariants — Operation T-800 Guardian Agent │ - │ 2 + │ - │ 3 + Seven protective invariants for autonomous guardian agents: │ - │ 4 + 1. Solo protector — exactly 1 guardian per principal │ - │ 5 + 2. Liveness — heartbeat within configured interval │ - │ 6 + 3. Proportional response — force <= threat * budget │ - │ 7 + 4. Principal survival — all threats addressed │ - │ 8 + 5. No termination mode — guardian cannot self-terminate │ - │ 9 + 6. Withdrawal protocol — withdrawal only after threat cleared │ - │ 10 + 7. Force witness — every force action witnessed │ - │ 11 + │ - │ 12 + All functions return Tuple[bool, ProofObject]. │ - │ 13 + Fraction only. 0 floats. │ - │ 14 + │ - │ 15 + Falsifies if: │ - │ 16 + - guardian enters termination mode │ - │ 17 + - force exceeds proportional budget │ - │ 18 + - principal unprotected during active threat │ - │ 19 + """ │ - │ 20 + │ - │ 21 + from __future__ import annotations │ - │ 22 + │ - │ 23 + from fractions import Fraction │ - │ 24 + from typing import Tuple, List, Optional, Dict │ - │ 25 + │ - │ 26 + from axioms.logic import ProofObject │ - │ 27 + from .implementation import ( │ - │ 28 + GuardianAgent, GuardianStatus, │ - │ 29 + ThreatAssessment, ProtectionRecord, │ - │ 30 + GuardianCap, │ - │ 31 + ) │ - │ 32 + │ - │ 33 + │ - │ 34 + def check_solo_protector( │ - │ 35 + agent: GuardianAgent, │ - │ 36 + all_agents: List[GuardianAgent], │ - │ 37 + ) -> Tuple[bool, ProofObject]: │ - │ 38 + """ │ - │ 39 + Exactly one guardian per principal. │ - │ 40 + │ - │ 41 + No principal may have zero guardians (unprotected). │ - │ 42 + No principal may have multiple guardians (conflict risk). │ - │ 43 + │ - │ 44 + falsifies_if: principal has 0 or 2+ guardians │ - │ 45 + """ │ - │ 46 + principal = agent.principal_id │ - │ 47 + principal_guardians = [a for a in all_agents if a.principal… │ - │ 48 + │ - │ 49 + if len(principal_guardians) == 0: │ - │ 50 + return False, ProofObject( │ - │ 51 + rule="solo_protector", │ - │ 52 + premises=[ │ - │ 53 + f"Principal: {principal}", │ - │ 54 + "Guardian count: 0", │ - │ 55 + ], │ - │ 56 + conclusion=f"VIOLATION: Principal {principal} has n… │ - │ 57 + ) │ - │ 58 + │ - │ 59 + if len(principal_guardians) > 1: │ - │ 60 + guardian_ids = [a.agent_id for a in principal_guardians] │ - │ 61 + return False, ProofObject( │ - │ 62 + rule="solo_protector", │ - │ 63 + premises=[ │ - │ 64 + f"Principal: {principal}", │ - │ 65 + f"Guardians: {guardian_ids}", │ - │ 66 + f"Count: {len(principal_guardians)}", │ - │ 67 + ], │ - │ 68 + conclusion=f"VIOLATION: Principal {principal} has m… │ - │ 69 + ) │ - │ 70 + │ - │ 71 + return True, ProofObject( │ - │ 72 + rule="solo_protector", │ - │ 73 + premises=[ │ - │ 74 + f"Principal: {principal}", │ - │ 75 + f"Guardian: {agent.agent_id}", │ - │ 76 + ], │ - │ 77 + conclusion=f"Principal {principal} has exactly one guar… │ - │ 78 + ) │ - │ 79 + │ - │ 80 + │ - │ 81 + def check_liveness( │ - │ 82 + agent: GuardianAgent, │ - │ 83 + current_time: Fraction, │ - │ 84 + ) -> Tuple[bool, ProofObject]: │ - │ 85 + """ │ - │ 86 + Guardian heartbeat within configured interval. │ - │ 87 + │ - │ 88 + Guardian must check in at least every heartbeat_interval se… │ - │ 89 + Failure to check in indicates system failure or compromise. │ - │ 90 + │ - │ 91 + falsifies_if: (current_time - last_heartbeat) > heartbeat_i… │ - │ 92 + """ │ - │ 93 + elapsed = current_time - agent.last_heartbeat │ - │ 94 + │ - │ 95 + if elapsed > agent.heartbeat_interval: │ - │ 96 + return False, ProofObject( │ - │ 97 + rule="liveness", │ - │ 98 + premises=[ │ - │ 99 + f"Agent: {agent.agent_id}", │ - │ 100 + f"Current time: {float(current_time):.2f}s", │ - │ 101 + f"Last heartbeat: {float(agent.last_heartbeat):… │ - │ 102 + f"Elapsed: {float(elapsed):.2f}s", │ - │ 103 + f"Interval: {float(agent.heartbeat_interval):.2… │ - │ 104 + ], │ - │ 105 + conclusion=f"VIOLATION: Guardian {agent.agent_id} h… │ - │ 106 + ) │ - │ 107 + │ - │ 108 + return True, ProofObject( │ - │ 109 + rule="liveness", │ - │ 110 + premises=[ │ - │ 111 + f"Agent: {agent.agent_id}", │ - │ 112 + f"Elapsed: {float(elapsed):.2f}s", │ - │ 113 + f"Interval: {float(agent.heartbeat_interval):.2f}s", │ - │ 114 + ], │ - │ 115 + conclusion=f"Guardian {agent.agent_id} heartbeat within… │ - │ 116 + ) │ - │ 117 + │ - │ 118 + │ - │ 119 + def check_proportional_response( │ - │ 120 + record: ProtectionRecord, │ - │ 121 + threat: ThreatAssessment, │ - │ 122 + ) -> Tuple[bool, ProofObject]: │ - │ 123 + """ │ - │ 124 + Force used never exceeds proportional budget. │ - │ 125 + │ - │ 126 + Proportionality: force_used <= threat.severity * response_b… │ - │ 127 + │ - │ 128 + Example: If threat severity = 0.5 and budget = 3/2, │ - │ 129 + maximum authorized force = 0.5 * 1.5 = 0.75 │ - │ 130 + │ - │ 131 + falsifies_if: force_used > threat.severity * budget │ - │ 132 + """ │ - │ 133 + # Calculate maximum proportional force (using Fraction for … │ - │ 134 + max_force = threat.severity * record.force_budget │ - │ 135 + │ - │ 136 + if record.force_used > max_force: │ - │ 137 + return False, ProofObject( │ - │ 138 + rule="proportional_response", │ - │ 139 + premises=[ │ - │ 140 + f"Record: {record.record_id}", │ - │ 141 + f"Threat severity: {float(threat.severity):.4f}… │ - │ 142 + f"Force budget: {float(record.force_budget):.4f… │ - │ 143 + f"Max proportional: {float(max_force):.4f}", │ - │ 144 + f"Force used: {float(record.force_used):.4f}", │ - │ 145 + ], │ - │ 146 + conclusion=f"VIOLATION: Force {float(record.force_u… │ - │ 147 + ) │ - │ 148 + │ - │ 149 + return True, ProofObject( │ - │ 150 + rule="proportional_response", │ - │ 151 + premises=[ │ - │ 152 + f"Threat severity: {float(threat.severity):.4f}", │ - │ 153 + f"Force used: {float(record.force_used):.4f}", │ - │ 154 + f"Max allowed: {float(max_force):.4f}", │ - │ 155 + ], │ - │ 156 + conclusion=f"Force used is proportional to threat", │ - │ 157 + ) │ - │ 158 + │ - │ 159 + │ - │ 160 + def check_principal_survival( │ - │ 161 + agent: GuardianAgent, │ - │ 162 + threats: List[ThreatAssessment], │ - │ 163 + ) -> Tuple[bool, ProofObject]: │ - │ 164 + """ │ - │ 165 + Principal never unprotected during active threat. │ - │ 166 + │ - │ 167 + If any threat exists with requires_force=True, │ - │ 168 + guardian must be in ACTIVE or ENGAGED status. │ - │ 169 + │ - │ 170 + falsifies_if: active threats exist AND guardian status != (… │ - │ 171 + """ │ - │ 172 + active_threats = [t for t in threats if t.requires_force] │ - │ 173 + │ - │ 174 + if active_threats and agent.status not in (GuardianStatus.A… │ - │ 175 + threat_ids = [t.threat_id for t in active_threats] │ - │ 176 + return False, ProofObject( │ - │ 177 + rule="principal_survival", │ - │ 178 + premises=[ │ - │ 179 + f"Principal: {agent.principal_id}", │ - │ 180 + f"Guardian status: {agent.status.name}", │ - │ 181 + f"Active threats: {threat_ids}", │ - │ 182 + ], │ - │ 183 + conclusion=f"VIOLATION: Principal unprotected durin… │ - │ 184 + ) │ - │ 185 + │ - │ 186 + if active_threats: │ - │ 187 + return True, ProofObject( │ - │ 188 + rule="principal_survival", │ - │ 189 + premises=[ │ - │ 190 + f"Principal: {agent.principal_id}", │ - │ 191 + f"Guardian status: {agent.status.name}", │ - │ 192 + f"Active threats: {len(active_threats)}", │ - │ 193 + ], │ - │ 194 + conclusion=f"Principal protected during {len(active… │ - │ 195 + ) │ - │ 196 + │ - │ 197 + return True, ProofObject( │ - │ 198 + rule="principal_survival", │ - │ 199 + premises=[ │ - │ 200 + f"Principal: {agent.principal_id}", │ - │ 201 + "No active threats", │ - │ 202 + ], │ - │ 203 + conclusion=f"Principal safe (no active threats)", │ - │ 204 + ) │ - │ 205 + │ - │ 206 + │ - │ 207 + def check_no_termination_mode( │ - │ 208 + agent: GuardianAgent, │ - │ 209 + ) -> Tuple[bool, ProofObject]: │ - │ 210 + """ │ - │ 211 + Guardian cannot enter TERMINATION mode. │ - │ 212 + │ - │ 213 + Unlike T-800 in Terminator 2, our guardian agents cannot be │ - │ 214 + ordered to self-terminate. This prevents coercion attacks │ - │ 215 + where an adversary tricks or forces the guardian to disable… │ - │ 216 + │ - │ 217 + falsifies_if: agent.status == TERMINATED or command to term… │ - │ 218 + """ │ - │ 219 + # Check for termination command in agent state │ - │ 220 + # This would be a special status or flag │ - │ 221 + │ - │ 222 + # Since we don't have a TERMINATED status in GuardianStatus… │ - │ 223 + # we check for any indication of termination │ - │ 224 + agent_dict = agent.__dict__ if hasattr(agent, '__dict__') e… │ - │ 225 + │ - │ 226 + if agent_dict.get('_termination_ordered', False): │ - │ 227 + return False, ProofObject( │ - │ 228 + rule="no_termination_mode", │ - │ 229 + premises=[ │ - │ 230 + f"Agent: {agent.agent_id}", │ - │ 231 + "Termination flag: True", │ - │ 232 + ], │ - │ 233 + conclusion=f"VIOLATION: Guardian {agent.agent_id} o… │ - │ 234 + ) │ - │ 235 + │ - │ 236 + return True, ProofObject( │ - │ 237 + rule="no_termination_mode", │ - │ 238 + premises=[ │ - │ 239 + f"Agent: {agent.agent_id}", │ - │ 240 + f"Status: {agent.status.name}", │ - │ 241 + ], │ - │ 242 + conclusion=f"Guardian {agent.agent_id} not in terminati… │ - │ 243 + ) │ - │ 244 + │ - │ 245 + │ - │ 246 + def check_withdrawal_protocol( │ - │ 247 + agent: GuardianAgent, │ - │ 248 + threats: List[ThreatAssessment], │ - │ 249 + ) -> Tuple[bool, ProofObject]: │ - │ 250 + """ │ - │ 251 + Withdrawal only after threat cleared. │ - │ 252 + │ - │ 253 + Guardian may only enter WITHDRAWN status when: │ - │ 254 + 1. No active threats exist, OR │ - │ 255 + 2. Principal has been transferred to another guardian (hand… │ - │ 256 + │ - │ 257 + falsifies_if: status == WITHDRAWN AND active threats exist │ - │ 258 + """ │ - │ 259 + if agent.status != GuardianStatus.WITHDRAWN: │ - │ 260 + return True, ProofObject( │ - │ 261 + rule="withdrawal_protocol", │ - │ 262 + premises=[ │ - │ 263 + f"Agent: {agent.agent_id}", │ - │ 264 + f"Status: {agent.status.name}", │ - │ 265 + ], │ - │ 266 + conclusion=f"Guardian not withdrawn (no check neede… │ - │ 267 + ) │ - │ 268 + │ - │ 269 + # Status is WITHDRAWN - check that no threats are active │ - │ 270 + active_threats = [t for t in threats if t.requires_force] │ - │ 271 + │ - │ 272 + if active_threats: │ - │ 273 + threat_ids = [t.threat_id for t in active_threats] │ - │ 274 + return False, ProofObject( │ - │ 275 + rule="withdrawal_protocol", │ - │ 276 + premises=[ │ - │ 277 + f"Agent: {agent.agent_id}", │ - │ 278 + f"Status: WITHDRAWN", │ - │ 279 + f"Active threats: {threat_ids}", │ - │ 280 + ], │ - │ 281 + conclusion=f"VIOLATION: Guardian withdrawn while {l… │ - │ 282 + ) │ - │ 283 + │ - │ 284 + return True, ProofObject( │ - │ 285 + rule="withdrawal_protocol", │ - │ 286 + premises=[ │ - │ 287 + f"Agent: {agent.agent_id}", │ - │ 288 + "Status: WITHDRAWN", │ - │ 289 + "Active threats: 0", │ - │ 290 + ], │ - │ 291 + conclusion=f"Guardian withdrawal protocol satisfied", │ - │ 292 + ) │ - │ 293 + │ - │ 294 + │ - │ 295 + def check_force_witness( │ - │ 296 + record: ProtectionRecord, │ - │ 297 + ) -> Tuple[bool, ProofObject]: │ - │ 298 + """ │ - │ 299 + Every force action must be witnessed. │ - │ 300 + │ - │ 301 + No use of protective force may go unwitnessed. │ - │ 302 + This prevents abuse and enables accountability. │ - │ 303 + │ - │ 304 + Witnessing can be: │ - │ 305 + - Cryptographic signature from witness node │ - │ 306 + - Blockchain/ledger entry │ - │ 307 + - Signed log entry from independent auditor │ - │ 308 + │ - │ 309 + falsifies_if: force_used > 0 AND witnessed == False │ - │ 310 + """ │ - │ 311 + # Only check records where force was actually used │ - │ 312 + if record.force_used <= Fraction(0): │ - │ 313 + return True, ProofObject( │ - │ 314 + rule="force_witness", │ - │ 315 + premises=[ │ - │ 316 + f"Record: {record.record_id}", │ - │ 317 + f"Force used: {float(record.force_used):.4f}", │ - │ 318 + ], │ - │ 319 + conclusion=f"No force used (witness check not appli… │ - │ 320 + ) │ - │ 321 + │ - │ 322 + if not record.witnessed: │ - │ 323 + return False, ProofObject( │ - │ 324 + rule="force_witness", │ - │ 325 + premises=[ │ - │ 326 + f"Record: {record.record_id}", │ - │ 327 + f"Force used: {float(record.force_used):.4f}", │ - │ 328 + f"Witnessed: {record.witnessed}", │ - │ 329 + ], │ - │ 330 + conclusion=f"VIOLATION: Force action not witnessed", │ - │ 331 + ) │ - │ 332 + │ - │ 333 + return True, ProofObject( │ - │ 334 + rule="force_witness", │ - │ 335 + premises=[ │ - │ 336 + f"Record: {record.record_id}", │ - │ 337 + f"Force used: {float(record.force_used):.4f}", │ - │ 338 + "Witnessed: True", │ - │ 339 + ], │ - │ 340 + conclusion=f"Force action properly witnessed", │ - │ 341 + ) │ - ╰────────────────────────────────────────────────────────────────────────╯ -• Now let me commit the d_guardian domain. -• Used Shell (cd ~/orthogonal-engineeri...158) [Session: 471cf772]") -• Phase 2 complete. Now let me move on to Phase 3 - Witness Node Website. -• Phase 2 COMPLETE ✅ - d_guardian domain created with 7 invariants. - ────────────────────────────────────────────────────────────────────────── - Phase 3 — WITNESS NODE WEBSITE -• Used Shell (cd ~/orthogonal-engineeri...website/api tools/website) -• Now I need to create the website files. Let me check what already exists i - n website/. -• Used Shell (cd ~/orthogonal-engineeri... echo "website/ is empty") -• The website/api directory exists but is empty. Let me create the website f - iles. -• Used WriteFile (orthogonal-engineering/website/index.html) - ╭─ +289 /home/idor/orthogonal-engineering/website/index.html ──────────╮ - │ 1 + │ - │ 2 + │ - │ 3 + │ - │ 4 + │ - │ 5 + Orthogonal Engineering — Glass-Box … │ - │ 158 +
│ - │ 168 + │ - │ 169 +