task(BE-5766): Introduce PAPI-HETA tools

Author: neelay-aign

README.md

@@ -633,7 +633,7 @@ Add the following to your Claude Desktop configuration file:
   "mcpServers": {
     "aignostics": {
       "command": "uvx",
-      "args": ["aignostics", "mcp-run"]
+      "args": ["aignostics", "mcp", "run"]
     }
   }
 }

pyproject.toml

@@ -138,7 +138,7 @@ dependencies = [
     "lxml>=6.0.2",                      # For python 3.14 pre-built wheels
     "filelock>=3.20.1",                 # CVE-2025-68146
     "marshmallow>=3.26.2",              # CVE-2025-68480
-    "fastmcp>=2.0.0,<3",                # MCP server - Major version 3 is in beta as of 26/01/2026 and has not been released on PyPI. Upgraded once a stable release is out.
+    "fastmcp @ git+https://github.com/jlowin/fastmcp.git@c8e2c621ef9e568f698e99085ed5d9e5d96678c6",  # MCP server - Pinned to commit with meta field preservation fix
 ]
 
 [project.optional-dependencies]

src/aignostics/cli.py

@@ -70,18 +70,18 @@ def notebook(
 
 @mcp_cli.command("run")
 def mcp_run() -> None:
-    """Run the MCP server.
+    """Run the MCP server with all tools including MCP Apps.
 
     Starts an MCP server using stdio transport that exposes SDK functionality
-    to AI agents. The server automatically discovers and mounts tools from
-    the SDK and any installed plugins.
+    to AI agents. The server discovers and mounts all available MCP servers,
+    including those with MCP Apps for interactive visualizations.
 
     Examples:
         aignostics mcp run
     """
-    from aignostics.utils import mcp_run  # noqa: PLC0415
+    from aignostics.utils import mcp_run_server  # noqa: PLC0415
 
-    mcp_run()
+    mcp_run_server()
 
 
 @mcp_cli.command("list-tools")