Error in Partial least square regression analysis for only cortical regions included

[lenachenpumc]

Dear alegiac95,

Thank you for your toolbox "Imaging-transcriptomics".
I have met bug performing this code
(transcriptomics) PS C:\Users\lena> imagingtranscriptomics --input F:/banana/Reslice_7_1.nii --regions cort --no-gsea pls --ncomp 1

The error is
Traceback (most recent call last): File "D:\anaconda\envs\transcriptomics\lib\runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "D:\anaconda\envs\transcriptomics\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "D:\anaconda\envs\transcriptomics\Scripts\imagingtranscriptomics.exe\__main__.py", line 7, in <module> sys.exit(main()) File "D:\anaconda\envs\transcriptomics\lib\site-packages\imaging_transcriptomics\script\imagingtranscriptomics.py", line 103, in main transcriptomics.run(outdir, File "D:\anaconda\envs\transcriptomics\lib\site-packages\imaging_transcriptomics\transcriptomics.py", line 320, in run self.scan_data[0:34, :] IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed

Please, how to solve this error? Thank you!

[alegiac95]

Hi, this issues seems to be related somehow in a small bug, which should now be corrected. try to upgrade the toolbox and see if the error keeps popping up