From 66195ea419c50cd823d8bc2e7559fe0891ecb3b3 Mon Sep 17 00:00:00 2001 From: Sebastian Schmidt Date: Mon, 10 Aug 2026 11:51:52 +0300 Subject: [PATCH] chore: Release --- Cargo.lock | 16 ++++++++-------- generic_a_star/Cargo.toml | 2 +- lib_ts_chainalign/Cargo.toml | 6 +++--- lib_tsalign/Cargo.toml | 6 +++--- lib_tsshow/Cargo.toml | 4 ++-- python_bindings/Cargo.toml | 6 +++--- seed_chain/Cargo.toml | 4 ++-- tsalign-tests/Cargo.toml | 2 +- tsalign/Cargo.toml | 10 +++++----- 9 files changed, 28 insertions(+), 28 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 859e88f..64bef3b 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -445,7 +445,7 @@ dependencies = [ [[package]] name = "generic_a_star" -version = "4.1.0" +version = "5.0.0" dependencies = [ "binary-heap-plus", "compare", @@ -593,7 +593,7 @@ checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe" [[package]] name = "lib_ts_chainalign" -version = "4.1.0" +version = "5.0.0" dependencies = [ "binary-heap-plus", "bincode", @@ -613,7 +613,7 @@ dependencies = [ [[package]] name = "lib_tsalign" -version = "4.1.0" +version = "5.0.0" dependencies = [ "binary-heap-plus", "compact-genome", @@ -634,7 +634,7 @@ dependencies = [ [[package]] name = "lib_tsshow" -version = "4.1.0" +version = "5.0.0" dependencies = [ "clap", "ena", @@ -859,7 +859,7 @@ dependencies = [ [[package]] name = "py_lib_tsalign" -version = "4.1.0" +version = "5.0.0" dependencies = [ "compact-genome", "lib_tsalign", @@ -1066,7 +1066,7 @@ checksum = "cf54715a573b99ac80df0bc206da022bcd442c974952c7b9720069370852e21f" [[package]] name = "seed_chain" -version = "4.1.0" +version = "5.0.0" dependencies = [ "compact-genome", "generic_a_star", @@ -1444,7 +1444,7 @@ checksum = "2b939c825d0c4295ac520f7b479927c1e5b458c9107a9d6f5ba65bc867bb93a5" [[package]] name = "tsalign" -version = "4.1.0" +version = "5.0.0" dependencies = [ "anyhow", "bincode", @@ -1465,7 +1465,7 @@ dependencies = [ [[package]] name = "tsalign-tests" -version = "4.1.0" +version = "5.0.0" dependencies = [ "anyhow", "clap", diff --git a/generic_a_star/Cargo.toml b/generic_a_star/Cargo.toml index 6816edf..8cd9e0b 100644 --- a/generic_a_star/Cargo.toml +++ b/generic_a_star/Cargo.toml @@ -1,7 +1,7 @@ [package] name = "generic_a_star" description = "A generic implementation of the A* algorithm" -version = "4.1.0" +version = "5.0.0" edition.workspace = true rust-version.workspace = true license.workspace = true diff --git a/lib_ts_chainalign/Cargo.toml b/lib_ts_chainalign/Cargo.toml index a785847..83b3b2e 100644 --- a/lib_ts_chainalign/Cargo.toml +++ b/lib_ts_chainalign/Cargo.toml @@ -2,15 +2,15 @@ name = "lib_ts_chainalign" description = "A chaining-based sequence-to-sequence aligner that accounts for template switches" authors = ["Sebastian Schmidt "] -version = "4.1.0" +version = "5.0.0" license.workspace = true edition.workspace = true rust-version.workspace = true repository.workspace = true [dependencies] -generic_a_star = { version = "4.1.0", path = "../generic_a_star" } -lib_tsalign = { version = "4.1.0", path = "../lib_tsalign" } +generic_a_star = { version = "5.0.0", path = "../generic_a_star" } +lib_tsalign = { version = "5.0.0", path = "../lib_tsalign" } ndarray = { version = "0.17.1", features = ["serde"] } num-traits.workspace = true serde = { workspace = true, features = ["derive"] } diff --git a/lib_tsalign/Cargo.toml b/lib_tsalign/Cargo.toml index d941aeb..612176d 100644 --- a/lib_tsalign/Cargo.toml +++ b/lib_tsalign/Cargo.toml @@ -2,7 +2,7 @@ name = "lib_tsalign" description = "A sequence-to-sequence aligner that accounts for template switches" authors = ["Sebastian Schmidt "] -version = "4.1.0" +version = "5.0.0" license.workspace = true edition.workspace = true rust-version.workspace = true @@ -26,9 +26,9 @@ thiserror.workspace = true num-traits.workspace = true serde = { workspace = true, features = ["derive"], optional = true } noisy_float = { version = "0.2.0" } -generic_a_star = { version = "4.1.0", path = "../generic_a_star" } +generic_a_star = { version = "5.0.0", path = "../generic_a_star" } log.workspace = true rustc-hash = "2.1.1" -seed_chain = { version = "4.1.0", path = "../seed_chain" } +seed_chain = { version = "5.0.0", path = "../seed_chain" } extend_map = "0.14.3" template-switch-error-free-inners = "0.1.1" diff --git a/lib_tsshow/Cargo.toml b/lib_tsshow/Cargo.toml index 75819e5..88a73cd 100644 --- a/lib_tsshow/Cargo.toml +++ b/lib_tsshow/Cargo.toml @@ -3,13 +3,13 @@ name = "lib_tsshow" description = "A visualiser for template-switch alignments" license.workspace = true authors = ["Sebastian Schmidt "] -version = "4.1.0" +version = "5.0.0" edition.workspace = true rust-version.workspace = true repository.workspace = true [dependencies] -lib_tsalign = { version = "4.1.0", path = "../lib_tsalign" } +lib_tsalign = { version = "5.0.0", path = "../lib_tsalign" } log.workspace = true svg = "0.18.0" resvg = "0.48.1" diff --git a/python_bindings/Cargo.toml b/python_bindings/Cargo.toml index 02e10ee..68aa65f 100644 --- a/python_bindings/Cargo.toml +++ b/python_bindings/Cargo.toml @@ -6,7 +6,7 @@ authors = [ "Sebastian Schmidt ", "Jasper Krauter ", ] -version = "4.1.0" +version = "5.0.0" edition.workspace = true rust-version.workspace = true repository.workspace = true @@ -18,10 +18,10 @@ crate-type = ["cdylib"] [dependencies] pyo3 = "0.26" -lib_tsalign = { version = "4.1.0", path = "../lib_tsalign", features = [ +lib_tsalign = { version = "5.0.0", path = "../lib_tsalign", features = [ "serde", ] } -lib_tsshow = { version = "4.1.0", path = "../lib_tsshow" } +lib_tsshow = { version = "5.0.0", path = "../lib_tsshow" } serde.workspace = true pythonize = "0.26" pyo3-log = "0.13" diff --git a/seed_chain/Cargo.toml b/seed_chain/Cargo.toml index dec01e0..dce122e 100644 --- a/seed_chain/Cargo.toml +++ b/seed_chain/Cargo.toml @@ -3,7 +3,7 @@ name = "seed_chain" description = "A seeding and generic chaining mechanism for sequence-to-sequence alignment" license.workspace = true authors = ["Sebastian Schmidt "] -version = "4.1.0" +version = "5.0.0" edition.workspace = true rust-version.workspace = true repository.workspace = true @@ -12,5 +12,5 @@ repository.workspace = true [dependencies] compact-genome.workspace = true log.workspace = true -generic_a_star = { version = "4.1.0", path = "../generic_a_star" } +generic_a_star = { version = "5.0.0", path = "../generic_a_star" } num-traits.workspace = true diff --git a/tsalign-tests/Cargo.toml b/tsalign-tests/Cargo.toml index f44b490..6ab0648 100644 --- a/tsalign-tests/Cargo.toml +++ b/tsalign-tests/Cargo.toml @@ -2,7 +2,7 @@ name = "tsalign-tests" license.workspace = true authors = ["Sebastian Schmidt ", "Jasper Krauter "] -version = "4.1.0" +version = "5.0.0" edition.workspace = true rust-version.workspace = true repository.workspace = true diff --git a/tsalign/Cargo.toml b/tsalign/Cargo.toml index c8d1021..f1d9e72 100644 --- a/tsalign/Cargo.toml +++ b/tsalign/Cargo.toml @@ -3,7 +3,7 @@ name = "tsalign" description = "A sequence-to-sequence aligner that accounts for template switches" license.workspace = true authors = ["Sebastian Schmidt "] -version = "4.1.0" +version = "5.0.0" edition.workspace = true rust-version.workspace = true repository.workspace = true @@ -22,12 +22,12 @@ strategy_total_length_maximise = [] default = ["strategy_total_length_maximise", "alphabet_dna", "alphabet_dna_n"] [dependencies] -generic_a_star = { version = "4.1.0", path = "../generic_a_star" } -lib_tsalign = { version = "4.1.0", path = "../lib_tsalign", features = [ +generic_a_star = { version = "5.0.0", path = "../generic_a_star" } +lib_tsalign = { version = "5.0.0", path = "../lib_tsalign", features = [ "serde", ] } -lib_ts_chainalign = { version = "4.1.0", path = "../lib_ts_chainalign" } -lib_tsshow = { version = "4.1.0", path = "../lib_tsshow" } +lib_ts_chainalign = { version = "5.0.0", path = "../lib_ts_chainalign" } +lib_tsshow = { version = "5.0.0", path = "../lib_tsshow" } clap.workspace = true compact-genome = { workspace = true, features = ["io"] } traitsequence.workspace = true