### Description of feature ## Nimbus inference repo - [x] Convert weights from tf to torch with [ivy](https://github.com/unifyai/ivy) - [x] #27 ## Nimbus inference class - [x] Adapt from class from [Nimbus repo](https://github.com/angelolab/Nimbus/blob/main/src/cell_classification/inference.py) - [x] Add tile & stitch inference - [x] Add different data source structures (i.e. ome-tiff directories) - [x] Add inference notebook comparable to [this one](https://github.com/angelolab/Nimbus/blob/main/templates/1_Nimbus_Predict.ipynb) - [ ] Add easy-to-use and hackable commandline interface - [x] Change user input half-resolution to the actual magnification level of the images and fix type casting mentioned in #26. ## Viewer Widget - [x] Add viewer widget from [here](https://github.com/angelolab/Nimbus/blob/main/src/cell_classification/viewer_widget.py) - [x] Make viewer widget work with less than three channels - [x] Build a second viewer widget with channels on the left, instance map on the right and all cells gray except the one we're interested in in white. - [x] Adapt the viewer to show marker images and gold-standard groundtruth next to each other ## General project - [x] Make the data available (EMBL) - [x] Clean up plot notebooks - [x] Update the documentation and the pypi distribution
Description of feature
Nimbus inference repo
Nimbus inference class
Viewer Widget
General project