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Biocomputing Basics

This task demonstrates basic bioinformatics command-line skills using Bash for simple DNA file handling and inspection.

Bash Tasks

  • Print name and create directories

  • Download DNA sequence files (.fna, .gbk)

  • Organize files (move .fna file, remove duplicates)

  • Check for DNA patterns (tata vs tatatata) to identify wildtype or mutant

  • Extract key information from a GenBank file:

    • Sequence length

    • Source organism

    • Gene names

  • List files and display command history

Script

part1.sh – Runs all Bash commands to perform the above tasks.