Hi Zohaib,
I got the following error while running the annotate step:
Traceback (most recent call last):
File "scripts/annotate_count_table_v1.py", line 330, in <module>
annotate_eggNOG(tabfile = inputdir+"/"+inputfile, outfile = outputdir+"/"+outputfile)
File "scripts/annotate_count_table_v1.py", line 170, in annotate_eggNOG
x=infile[i][infile[i].index("\t"):infile[i].index("LevelI__")]+"LevelI__"+levelI[list_values[0]]+infile[i][infile[i].index("; LevelII__"):]
IndexError: list index out of range
Here I printed out some values for debugging:
inheritenceII: ['elII__Secondary metabolites biosynthesis, transport and catabolism', 'Chromatin structure and dynamics']
list_values: []
ID: COG0123_1
infile[i]: COG0123 71 80 45 60 69 55 55 52 0 48 51 39 27 71 DB__COG; LevelI__INFORMATION STORAGE AND PROCESSING..METABOLISM; LevelII__Secondary metabolites biosynthesis, transport and catabolism..Chromatin structure and dynamics; LevelIII__Deacetylases, including yeast histone deacetylase and acetoin utilization protein; LevelIV__; LevelV__; LevelVI__
It seems the list_values is empty, any idea?
Thanks,
Shengwei
Hi Zohaib,
I got the following error while running the annotate step:
Here I printed out some values for debugging:
It seems the
list_valuesis empty, any idea?Thanks,
Shengwei