diff --git a/docs/source/Installation.md b/docs/source/Installation.md index 9e34d5f23..093f16293 100644 --- a/docs/source/Installation.md +++ b/docs/source/Installation.md @@ -19,16 +19,18 @@ At this time, only Linux systems are supported. Mamba is recommended as the dependencies required by OpenFold are quite large and mamba can speed up the process. - Activate the environment, e.g `conda activate openfold_env` 1. Run the setup script to configure kernels and folding resources. - > scripts/install_third_party_dependencies.sh` + > scripts/install_third_party_dependencies.sh 1. Prepend the conda environment to the `$LD_LIBRARY_PATH`., e.g. - `export $LD_LIBRARY_PATH=$CONDA_PREFIX/lib:$LD_LIBRARY_PATH`. You may optionally set this as a conda environment variable according to the [conda docs](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#saving-environment-variables) to activate each time the environment is used. -1. Download parameters. We recommend using a destination as `openfold/resources` as our unittests will look for the weights there. + `export LD_LIBRARY_PATH=$CONDA_PREFIX/lib:$LD_LIBRARY_PATH`. You may optionally set this as a conda environment variable according to the [conda docs](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#saving-environment-variables) to activate each time the environment is used. +1. Download parameters. We recommend using a destination as `openfold/resources` as our unittests will look for the weights there. You can download all parameters to the same destination folder as the files will not overwrite each other. - For AlphaFold2 weights, use - > ./scripts/download_alphafold_params.sh + > ./scripts/download_alphafold_params.sh <dest> - For OpenFold weights, use : - > ./scripts/download_openfold_params.sh + > ./scripts/download_openfold_params.sh <dest> - For OpenFold SoloSeq weights, use: - > ./scripts/download_openfold_soloseq_params.sh + > ./scripts/download_openfold_soloseq_params.sh <dest> +1. Install OpenFold: + > python setup.py install ### Checking your build with unit tests: