Is there any way to substitute Spearman correlation method for the default Pearson correlation method? I can't seem to figure out which columns are being pulled from the SummarizedExperiment object to construct the underlying correlation matrix. Therefore I can't build out my own correlation matrix. Any help would be appreciated.
Is there any way to substitute Spearman correlation method for the default Pearson correlation method? I can't seem to figure out which columns are being pulled from the SummarizedExperiment object to construct the underlying correlation matrix. Therefore I can't build out my own correlation matrix. Any help would be appreciated.