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<!DOCTYPE html><html><head><title></title><link rel="shortcut icon" href="/favicon.ico" /><meta http-equiv="Content-type" content="text/html;charset=UTF-8" /><meta name="viewport" content="width=800" /><meta name="description" content="" /><meta name="generator" content="EverWeb 2.9.1 (2184)" /><meta name="buildDate" content="Tuesday, December 26, 2023" /><link rel="canonical" href="https://www.ics.uci.edu/~babaks/" /><meta property="og:url" content="https://www.ics.uci.edu/~babaks/" /><meta property="og:type" content="website" /> <link rel="stylesheet" type="text/css" href="ew_css/textstyles.css?3786495355" /><link rel="stylesheet" type="text/css" href="ew_css/responsive.css?3786495355" /><script type="text/javascript" src="ew_js/imageCode.js"></script><link rel="stylesheet" type="text/css" href="ew_css/italy/pagestyle.css?3.786467e+9" /><style type="text/css">div.container {min-height: 1267px;}.shape_6 {background-color:#F0F0F0;opacity: 1.00; filter:alpha(opacity=100);}.shape_11 {background-color:#797979;opacity: 1.00; filter:alpha(opacity=100);border-radius: 11px;}.shape_12 {background-color:#797979;opacity: 1.00; filter:alpha(opacity=100);border-radius: 11px;}.shape_13 {background-color:#797979;opacity: 1.00; filter:alpha(opacity=100);border-radius: 11px;}.shape_15 {background-color:#677284;opacity: 1.00; filter:alpha(opacity=100);}</style></head><body><div class="container" style="height:1267px"><header><div style="position:relative"><div class="ewnavmenu" id="navmenu_menu0" style="left:123px;top:21px;height:26px;width:556px;z-index:10000;position: absolute;"><ul id="navigation_menu0"><li><a class="main item0" href="index.html" data-linkuuid="19DB96BD38E34C52BB4288DAD447C438">HOME</a></li><li><a class="main item1" href="research.html" data-linkuuid="19DB96BD38E34C52BB4288DAD447C438">RESEARCH</a></li><li><a class="main item2" href="publication.html" data-linkuuid="19DB96BD38E34C52BB4288DAD447C438">PUBLICATION</a></li><li><a class="main item3" href="teaching.html" data-linkuuid="19DB96BD38E34C52BB4288DAD447C438">TEACHING</a></li><li><a class="main item4" href="activities.html" data-linkuuid="19DB96BD38E34C52BB4288DAD447C438">ACTIVITIES</a></li><li style='margin-right:0px;' class="last"><a class="main item5" href="codes.html" data-linkuuid="19DB96BD38E34C52BB4288DAD447C438">CODES</a></li></ul></div></div><div class="shape_1" style="left:0;top:0.125px;width:100%;min-width:800px;height:50px;z-index:1;position: absolute;"></div><div style="position:relative"><div class="shape_2" style="left:-0.5px;top:12.625px;width:139px;height:37px;z-index:2;position: absolute;"><div style="padding: 4.75px 2.16px 4.32px 2.16px; "><p style="line-height:17px;margin-top:0px;margin-bottom:11px;" class="Style43">Babak Shahbaba</p></div></div></div><div style="position:relative"><div class="shape_3" style="left:0.75px;top:51px;width:797px;height:292px;z-index:3;position: absolute;"><img src="masterfiles/italy/images/Italy.jpg" height="292" width="797" data-src2x="masterfiles/italy/images/Italy@2x.jpg" srcset="masterfiles/italy/images/Italy.jpg 1x, masterfiles/italy/images/Italy@2x.jpg 2x" /></div></div><div style="position:relative"><div class="shape_4" style="left:470.5px;top:101px;width:267px;height:20px;z-index:4;position: absolute;"><img src="masterfiles/italy/images/shape_4.png" height="20" width="267" alt="(placeholder)" data-src2x="masterfiles/italy/images/shape_4@2x.png" srcset="masterfiles/italy/images/shape_4.png 1x, masterfiles/italy/images/shape_4@2x.png 2x" /></div></div><div style="position:relative"><div class="shape_5" style="left:417px;top:53px;width:382px;height:156px;z-index:5;position: absolute;"><p style="line-height:14px;text-align:center;margin-top:0px;margin-bottom:0px;" class="Style44">Babak Shahbaba, PhD</p><p style="line-height:14px;text-align:center;margin-bottom:0px;margin-top:0px;" class="Style44">Professor of Statistics and Computer Science </p><p style="line-height:14px;text-align:center;margin-bottom:0px;margin-top:0px;" class="Style44">Director of The UCI Data Science Initiative</p><p style="line-height:14px;text-align:center;margin-bottom:0px;margin-top:0px;" class="Style44">University of California, Irvine</p><p style="line-height:9.8px;text-align:center;margin-bottom:0px;margin-top:0px;" class="Style45"><br /></p><p style="line-height:14px;text-align:center;margin-bottom:0px;margin-top:0px;" class="Style44">Scalable Bayesian Inferences</p><p style="line-height:14px;text-align:center;margin-bottom:0px;margin-top:0px;" class="Style44">Nonparametric Bayesian Methods</p><p style="line-height:14px;text-align:center;margin-bottom:0px;margin-top:0px;" class="Style44">Statistical Methods in Biological Sciences </p></div></div></header><div class="content" data-minheight="0"><div class="shape_6" style="left:0;top:343px;width:100%;min-width:800px;height:636px;z-index:6;position: absolute;"></div><div style="position:relative"><div class="shape_7" style="left:0px;top:342.5px;width:800px;height:141px;z-index:7;position: absolute;"><p style="line-height:12px;text-align:center;margin-top:0px;margin-bottom:0px;" class="Style4"><br /></p><p style="line-height:34.5px;text-align:center;margin-bottom:0px;margin-top:0px;" class="Style5">HIGHLIGHTS</p><p style="line-height:12px;text-align:center;margin-bottom:0px;margin-top:0px;" class="Style4"><br /></p><p style="line-height:18px;margin-bottom:0px;margin-top:0px;" class="Style4"><br /></p></div></div><div style="position:relative"><div class="shape_8" style="left:0px;top:393.0156px;width:250px;height:874px;z-index:8;position: absolute;"><p style="line-height:30.4px;text-align:center;margin-top:0px;margin-bottom:0px;" class="Style2">Research </p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6">Ren, Y., Shahbaba, B., and Stark, C. (2023), Improving clinical efficiency in screening for cognitive impairment due to Alzheimer’s, <span class="Style7">Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring </span><span class="Style8">(to appear)</span><span class="Style7">.</span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6">Tran, B., Shahbaba, B., Mandt, S., Filippone, M. (2023), Fully Bayesian Autoencoders with Latent Sparse Gaussian Processes, <span class="Style7">ICML</span><span class="Style8"> 2023 (to appear).</span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6">Shahbaba, B., Li, L., Agostinelli, F., Saraf, M., Cooper, K.W., Haghverdian, D., Elias, G.A., Baldi, P., and Fortin, N.J. (2022), Hippocampal ensembles represent sequential relationships among discrete nonspatial events, </p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6">N<span class="Style7">ature Communications</span><span class="Style8">: </span><a href="https://www.nature.com/articles/s41467-022-28057-6" class="linkStyle_12">online</a><span class="Style8">.</span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6">Denti, F., Azevedo, R., Lo, C., Wheeler, D., Gandhi, S,P., Guindani, M., Shahbaba, B. (2023), A Horseshoe Pit mixture model for Bayesian screening with an application to light sheet fluorescence microscopy in brain imaging, <span class="Style7">Annals of Applied Statistics</span><span class="Style8"> (to appear)</span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><a href="https://arxiv.org/abs/1905.10413" class="linkStyle_12"></a><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:12px;margin-bottom:0px;margin-top:0px;" class="Style4"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p></div></div><div style="position:relative"><div class="shape_9" style="left:277px;top:393.0312px;width:250px;height:778px;z-index:9;position: absolute;"><p style="line-height:30.4px;text-align:center;margin-top:0px;margin-bottom:0px;" class="Style2">Teaching<span style="line-height:27px" class="Style46"> </span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11">See my <a href="https://github.com/babaks" class="linkStyle_12">GitHub</a><span class="Style15"> page for most up-to-date lecture notes, codes, and talks. </span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><a href="https://uci-dshs.netlify.app/" class="linkStyle_12">COSMOS</a><span class="Style15"> data science summer program for high school students.</span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11">STATS 235, Statistical Machine Learning: Overview of some general concepts in statistics and machine learning; Overview of optimization and sampling algorithms; Supervised and unsupervised learning; Regularization; Splines; Gaussian process regression models; SVM; Tree-based methods; Graphical models; Neural networks; Deep learning</p><p style="line-height:12px;margin-bottom:0px;margin-top:0px;" class="Style4"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11">STATS 225, Bayesian Data Analysis: <span class="Style49">The objective of this course is to explore Bayesian statistical methods and discuss their applications in real life problems. Students will also learn several computational techniques commonly used in Bayesian analysis. </span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style6"><br /></p></div></div><div style="position:relative"><div class="shape_10" style="left:546px;top:393.0156px;width:254px;height:734px;z-index:10;position: absolute;"><p style="line-height:30.4px;text-align:center;margin-top:0px;margin-bottom:0px;" class="Style2">News<span style="line-height:26px" class="Style10"> </span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11">See my <a href="https://github.com/babaks" class="linkStyle_12">GitHub</a><span class="Style15"> page for updates on our NSF and NIH funded projects. </span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11">SoCal Data Science -- <a href="https://www.stat.uci.edu/socal-data-science-program-off-to-a-strong-start/" class="linkStyle_12">a very successful first year</a></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11">Information on our new NSF grant from the Harnessing the Data Revolution (HDR) program can be found <a href="https://www.socaldata.science" class="linkStyle_12">here</a><span class="Style15">.</span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11">Information on our NIH-funded <span class="Style49">Irvine Summer Institute in Biostatistics and Undergraduate Data Science can be found </span><a href="https://www.stat.uci.edu/isi-buds/" class="linkStyle_25">here</a><span class="Style49">.</span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style50"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style50">Information on our NIH-R01 grant on Scalable Bayesian Stochastic Process Models for Neural Data Analysis can be found <a href="https://github.com/users/babaks/projects/2" class="linkStyle_25">here</a><span class="Style51">. </span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style50"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11">We will have our first <a href="https://cellfate.uci.edu/neurodatascience/" class="linkStyle_12">NeuroDataScience</a><span class="Style15"> workshop on Sep 22-23, 2022. This is a 2-day workshop to highlight recent challenges and developments related to big data problems in neuroscience.</span></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style11"><br /></p><p style="line-height:16px;margin-bottom:0px;margin-top:0px;" class="Style50"><br /></p></div></div><div style="position:relative"><a href="activities.html" data-linkuuid="19DB96BD38E34C52BB4288DAD447C438" class="outerlink"><div class="shape_11" style="left:610.5px;top:915.5px;width:113px;height:41px;z-index:11;position: absolute;"><div style="padding-top: 11px; "><p style="line-height:9.5px;text-align:center;margin-top:0px;margin-bottom:11px;" class="Style52">Learn more</p></div></div></a></div><div style="position:relative"><a href="teaching.html" data-linkuuid="19DB96BD38E34C52BB4288DAD447C438" class="outerlink"><div class="shape_12" style="left:335.5px;top:915.5px;width:113px;height:41px;z-index:12;position: absolute;"><div style="padding-top: 11px; "><p style="line-height:9.5px;text-align:center;margin-top:0px;margin-bottom:11px;" class="Style52">Learn more</p></div></div></a></div><div style="position:relative"><a href="research.html" data-linkuuid="19DB96BD38E34C52BB4288DAD447C438" class="outerlink"><div class="shape_13" style="left:51.5px;top:915.5px;width:113px;height:41px;z-index:13;position: absolute;"><div style="padding-top: 11px; "><p style="line-height:9.5px;text-align:center;margin-top:0px;margin-bottom:11px;" class="Style52">Learn more</p></div></div></a></div><div style="position:relative"><div class="shape_14" style="left:275.5px;top:373px;width:243px;height:20px;z-index:14;position: absolute;"><img src="images/home/shape_14.png" height="20" width="243" alt="(placeholder)" data-src2x="images/home/shape_14@2x.png" srcset="images/home/shape_14.png 1x, images/home/shape_14@2x.png 2x" /></div></div><div class="shape_15" style="left:0;top:979px;width:100%;min-width:800px;height:138px;z-index:15;position: absolute;"></div><div style="position:relative"><div style="left:486px;top:979px;height:138px;width:314px;position: absolute;z-index: 16;" class=""><!--314--><iframe width="100%" height="138" frameborder="0" scrolling="no" marginheight="0" marginwidth="0" src="https://www.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=6210 Donald Bren Hall, Irvine, CA 92697&ie=UTF8&output=embed"></iframe></div></div><div style="position:relative"><div class="shape_17" style="left:258.5625px;top:1081.5px;width:191px;height:39px;z-index:17;position: absolute;"><div style="padding: 4.32px 4.32px 4.32px 4.32px; "><p style="line-height:18.75px;margin-top:0px;margin-bottom:11px;" class="Style53">(949) 824-0623</p></div></div></div><div style="position:relative"><div class="shape_18" style="left:259.0156px;top:1035px;width:204px;height:48px;z-index:18;position: absolute;"><div style="padding: 4.32px 4.32px 4.32px 4.32px; "><p style="line-height:9px;margin-top:0px;margin-bottom:11px;" class="Style53">2222 ISEB, UC Irvine, CA 92697</p><p style="line-height:9px;margin-bottom:11px;margin-top:0px;" class="Style53">babaks at uci dot edu</p></div></div></div><div style="position:relative"><div class="shape_19" style="left:220.5px;top:992.5px;width:243px;height:43px;z-index:19;position: absolute;"><div style="padding: 4.32px 2.16px 4.32px 2.16px; "><p style="line-height:23px;margin-top:0px;margin-bottom:11px;" class="Style54">Contact</p></div></div></div><div style="position:relative"><div class="shape_20" style="left:221px;top:1078px;width:27px;height:27px;z-index:20;position: absolute;"><img src="images/home/telephone.png" height="27" width="27" data-src2x="images/home/telephone@2x.png" srcset="images/home/telephone.png 1x, images/home/telephone@2x.png 2x" /></div></div><div style="position:relative"><a href="mailto:babaks@uci.edu?subject=" class="outerlink"><div class="shape_21" style="left:221px;top:1036px;width:31px;height:25px;z-index:21;position: absolute;"><img src="images/home/mail.png" height="25" width="31" data-src2x="images/home/mail@2x.png" srcset="images/home/mail.png 1x, images/home/mail@2x.png 2x" /></div></a></div><div style="position:relative"><div class="shape_22" style="left:0px;top:979px;width:208px;height:138px;z-index:22;position: absolute;"><img src="images/home/FatherSon.jpg" height="138" width="208" data-src2x="images/home/FatherSon@2x.jpg" srcset="images/home/FatherSon.jpg 1x, images/home/FatherSon@2x.jpg 2x" /></div></div></div><footer data-top='1267' data-height='0'></footer></div></body></html>