The following lines seems to be causing a build failure.
recs <- entrez_fetch(db = "pubmed", id = res$ids[1:25], rettype = "xml", parsed = TRUE)
recs <- entrez_fetch(db = "pubmed", web_history = res$web_history, rettype = "xml", parsed = TRUE)
They both work fine when run interactively but throw the following error when trying to knit the Rmd.
Error in entrez_check(response) :
HTTP failure: 502, bad gateway. This error code is often returned when trying to download many records in a single request. Try using web history as described in the rentrez tutorial
Calls: <Anonymous> ... entrez_fetch -> do.call -> <Anonymous> -> entrez_check
Execution halted
Exited with status 1.
I turned these off with eval=FALSE for now.
cc @vpnagraj
see also #43
The following lines seems to be causing a build failure.
They both work fine when run interactively but throw the following error when trying to knit the Rmd.
I turned these off with
eval=FALSEfor now.cc @vpnagraj
see also #43