From b8aac496d1f307e68226aa1cc478504d0465e2f9 Mon Sep 17 00:00:00 2001
From: eloch216 <48919455+eloch216@users.noreply.github.com>
Date: Thu, 12 Dec 2024 11:34:08 -0600
Subject: [PATCH 1/8] Make `biomass_table` outputs more flexible

---
 NEWS.md                             |  5 +++
 R/biomass_table.R                   | 40 ++++++++++++++++------
 man/biomass_table.Rd                | 46 +++++++++++++++++--------
 tests/testthat/test-biomass_table.R | 52 +++++++++++++++++++++++++++++
 4 files changed, 120 insertions(+), 23 deletions(-)

diff --git a/NEWS.md b/NEWS.md
index b611e1d..46ba7bb 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -16,6 +16,11 @@ Subsequent commits will then include a new "Unreleased" section in preparation
 for the next release.
 -->
 
+# UNRELEASED
+
+- It is now possible to specify extra columns to be returned in the output from
+  `biomass_table`.
+
 # BioCroField VERSION 0.3.0
 
 - LMA is now included in the output from `biomass_table`.
diff --git a/R/biomass_table.R b/R/biomass_table.R
index 92ebef7..7821273 100644
--- a/R/biomass_table.R
+++ b/R/biomass_table.R
@@ -1,4 +1,16 @@
-biomass_table <- function(..., zero_when_missing = character()) {
+biomass_table <- function(
+    ...,
+    zero_when_missing = character(),
+    other_columns = c(
+        'LAI_from_planting_density',
+        'LAI_from_measured_population',
+        'agb_per_area',
+        'agb_per_plant_row',
+        'agb_per_plant_partitioning',
+        'measured_population'
+    )
+)
+{
     x <- list(...)
 
     types <- lapply(x, class)
@@ -9,12 +21,25 @@ biomass_table <- function(..., zero_when_missing = character()) {
     UseMethod('biomass_table', x[[1]])
 }
 
-biomass_table.harvest_point <- function(..., zero_when_missing = character()) {
+biomass_table.harvest_point <- function(
+    ...,
+    zero_when_missing = character(),
+    other_columns = c(
+        'LAI_from_planting_density',
+        'LAI_from_measured_population',
+        'agb_per_area',
+        'agb_per_plant_row',
+        'agb_per_plant_partitioning',
+        'measured_population'
+    )
+)
+{
     x <- list(...) # a list of harvest_point objects
 
     # Make sure certain inputs are character
     should_be_c <- list(
-        zero_when_missing = zero_when_missing
+        zero_when_missing = zero_when_missing,
+        other_columns = other_columns
     )
 
     c_bad <- sapply(should_be_c, function(x) {!is.character(x)})
@@ -48,18 +73,13 @@ biomass_table.harvest_point <- function(..., zero_when_missing = character()) {
         'SLA',
         'LMA',
         'LAI_from_LMA',
-        'LAI_from_planting_density',
-        'LAI_from_measured_population',
-        'agb_per_plant_row',
-        'agb_per_plant_partitioning',
-        'measured_population',
         'row_spacing',
         'plant_spacing',
         'planting_density'
     )
 
     cnames <-
-        c(initial_columns, all_components, final_columns, additional_arguments)
+        c(initial_columns, all_components, final_columns, other_columns, additional_arguments)
 
     # Form a data frame
     biomass <- stats::setNames(
@@ -75,7 +95,7 @@ biomass_table.harvest_point <- function(..., zero_when_missing = character()) {
     for (i in seq_along(x)) {
         hpp <- x[[i]]
 
-        for (name in c(initial_columns, final_columns)) {
+        for (name in c(initial_columns, final_columns, other_columns)) {
             if (name %in% names(hpp)) {
                 biomass[i, name] <- hpp[[name]]
             }
diff --git a/man/biomass_table.Rd b/man/biomass_table.Rd
index 37dc953..e41e431 100644
--- a/man/biomass_table.Rd
+++ b/man/biomass_table.Rd
@@ -11,9 +11,31 @@
 }
 
 \usage{
-  biomass_table(\dots, zero_when_missing = character())
-
-  \method{biomass_table}{harvest_point}(\dots, zero_when_missing = character())
+  biomass_table(
+    \dots,
+    zero_when_missing = character(),
+    other_columns = c(
+        'LAI_from_planting_density',
+        'LAI_from_measured_population',
+        'agb_per_area',
+        'agb_per_plant_row',
+        'agb_per_plant_partitioning',
+        'measured_population'
+    )
+  )
+
+  \method{biomass_table}{harvest_point}(
+    \dots,
+    zero_when_missing = character(),
+    other_columns = c(
+        'LAI_from_planting_density',
+        'LAI_from_measured_population',
+        'agb_per_area',
+        'agb_per_plant_row',
+        'agb_per_plant_partitioning',
+        'measured_population'
+    )
+  )
 }
 
 \arguments{
@@ -26,6 +48,11 @@
     \code{pod} would be set to \code{NA} for these points, but it would make
     more sense to set it to 0.
   }
+
+  \item{other_columns}{
+    The names of variables to include as columns in addition to the default
+    columns (see below).
+  }
 }
 
 \details{
@@ -55,16 +82,6 @@
 
     \item \code{LAI_from_LMA}
 
-    \item \code{LAI_from_planting_density}
-
-    \item \code{LAI_from_measured_population}
-
-    \item \code{agb_per_plant_row}
-
-    \item \code{agb_per_plant_partitioning}
-
-    \item \code{measured_population}
-
     \item \code{row_spacing}
 
     \item \code{plant_spacing}
@@ -76,6 +93,9 @@
 
     \item Any additional arguments (such as comments) that were passed to
           \code{\link{harvest_point}} when creating the data points
+
+    \item Any additional variables specified in the \code{other_columns} input
+          argument
   }
 
   See \code{\link{harvest_point}} and \code{\link{process}} for more information
diff --git a/tests/testthat/test-biomass_table.R b/tests/testthat/test-biomass_table.R
index dd9e68f..1bd0870 100644
--- a/tests/testthat/test-biomass_table.R
+++ b/tests/testthat/test-biomass_table.R
@@ -24,3 +24,55 @@ test_that("Additional harvest_point arguments are included in the final table",
 
     expect_identical(biomass$stem_comment, c('blah', NA))
 })
+
+test_that("Some table columns are specified by the user", {
+    essential_columns <- c(
+        'crop',
+        'variety',
+        'location',
+        'plot',
+        'year',
+        'doy',
+        'hour',
+        'time',
+        'SLA',
+        'LMA',
+        'LAI_from_LMA',
+        'row_spacing',
+        'plant_spacing',
+        'planting_density'
+    )
+
+    optional_columns <- c(
+        'LAI_from_planting_density',
+        'LAI_from_measured_population',
+        'agb_per_area',
+        'agb_per_plant_row',
+        'agb_per_plant_partitioning',
+        'measured_population'
+    )
+
+    hp <- process(harvest_point())
+
+    # Use default arguments
+    biomass_table_1 <- biomass_table(hp)
+
+    expect_true(
+        all(essential_columns %in% colnames(biomass_table_1))
+    )
+
+    expect_true(
+        all(optional_columns %in% colnames(biomass_table_1))
+    )
+
+    # Don't include any extra columns
+    biomass_table_2 <- biomass_table(hp, other_columns = character())
+
+    expect_true(
+        all(essential_columns %in% colnames(biomass_table_2))
+    )
+
+    expect_true(
+        all(!optional_columns %in% colnames(biomass_table_2))
+    )
+})

From c39cdc443b4405556e2636a367d5f1146d65af06 Mon Sep 17 00:00:00 2001
From: eloch216 <48919455+eloch216@users.noreply.github.com>
Date: Fri, 13 Dec 2024 16:04:23 -0600
Subject: [PATCH 2/8] Add another default biomass table entry

---
 R/biomass_table.R    | 2 ++
 man/biomass_table.Rd | 2 ++
 2 files changed, 4 insertions(+)

diff --git a/R/biomass_table.R b/R/biomass_table.R
index 7821273..17b4f25 100644
--- a/R/biomass_table.R
+++ b/R/biomass_table.R
@@ -2,6 +2,7 @@ biomass_table <- function(
     ...,
     zero_when_missing = character(),
     other_columns = c(
+        'leaf_area_per_plant',
         'LAI_from_planting_density',
         'LAI_from_measured_population',
         'agb_per_area',
@@ -25,6 +26,7 @@ biomass_table.harvest_point <- function(
     ...,
     zero_when_missing = character(),
     other_columns = c(
+        'leaf_area_per_plant',
         'LAI_from_planting_density',
         'LAI_from_measured_population',
         'agb_per_area',
diff --git a/man/biomass_table.Rd b/man/biomass_table.Rd
index e41e431..04f8496 100644
--- a/man/biomass_table.Rd
+++ b/man/biomass_table.Rd
@@ -15,6 +15,7 @@
     \dots,
     zero_when_missing = character(),
     other_columns = c(
+        'leaf_area_per_plant',
         'LAI_from_planting_density',
         'LAI_from_measured_population',
         'agb_per_area',
@@ -28,6 +29,7 @@
     \dots,
     zero_when_missing = character(),
     other_columns = c(
+        'leaf_area_per_plant',
         'LAI_from_planting_density',
         'LAI_from_measured_population',
         'agb_per_area',

From c4e7c54baf9bdb2d230ba933dad1441912d515d3 Mon Sep 17 00:00:00 2001
From: eloch216 <48919455+eloch216@users.noreply.github.com>
Date: Tue, 4 Feb 2025 12:23:24 -0600
Subject: [PATCH 3/8] Use BioCro::add_time_to_weather_data to calculate time

---
 DESCRIPTION                                 | 3 ++-
 NEWS.md                                     | 2 ++
 R/process.R                                 | 4 +++-
 man/generate_crop_guide.Rd                  | 2 +-
 man/process.Rd                              | 4 ++--
 tests/testthat/test-process.R               | 2 +-
 vignettes/handling_biomass_measurements.Rmd | 4 ++--
 7 files changed, 13 insertions(+), 8 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 51c1172..a863e8d 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -14,7 +14,8 @@ Encoding: UTF-8
 LazyData: true
 Depends: R (>= 4.0.0)
 Imports:
-    rmarkdown
+    rmarkdown,
+    BioCro
 Suggests:
     knitr,
     testthat (>= 3.0.0),
diff --git a/NEWS.md b/NEWS.md
index 46ba7bb..cb42153 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -20,6 +20,8 @@ for the next release.
 
 - It is now possible to specify extra columns to be returned in the output from
   `biomass_table`.
+- Values of `time` are now calculated using `BioCro::add_time_to_weather_data`
+  to ensure they are always consistent with BioCro's time definition.
 
 # BioCroField VERSION 0.3.0
 
diff --git a/R/process.R b/R/process.R
index 607bdf6..4e39325 100644
--- a/R/process.R
+++ b/R/process.R
@@ -12,7 +12,9 @@ process.harvest_point <- function(x, leaf_name = 'leaf', ...) {
     # that we can handle incomplete information in the inputs.
 
     # The time (as specified in BioCro)
-    time <- x[['doy']] + x[['hour']] / 24.0
+    time_list <- list(doy = x[['doy']], hour = x[['hour']])
+    time_list <- BioCro::add_time_to_weather_data(time_list)
+    time <- time_list[['time']]
 
     # Above-ground biomass from the plants that were partitioned (in g)
     partitioning_agb_weight <- if (length(x[['agb_components']]) > 0) {
diff --git a/man/generate_crop_guide.Rd b/man/generate_crop_guide.Rd
index e8d6672..836f6c3 100644
--- a/man/generate_crop_guide.Rd
+++ b/man/generate_crop_guide.Rd
@@ -88,7 +88,7 @@
   LaTeX installation, you may need to use the \code{TinyTex} package. To do
   this, make sure the package is installed and then run
   \code{tinytex::install_tinytex()}. \code{TinyTex} can be installed from CRAN
-  by typing code{install.packages('TinyTex')}.
+  by typing \code{install.packages('TinyTex')}.
 }
 
 \value{
diff --git a/man/process.Rd b/man/process.Rd
index a99d330..0e06026 100644
--- a/man/process.Rd
+++ b/man/process.Rd
@@ -38,8 +38,8 @@
 
   The detailed calculations are as follows:
   \itemize{
-    \item \code{time}: In BioCro, the time is specified as a fractional day of
-          the year calculated by \code{time = doy + hour / 24.0}.
+    \item \code{time}: The time as determined from the \code{doy} and
+          \code{hour} using \code{\link[BioCro]{add_time_to_weather_data}}.
 
     \item \code{measured_population}: The number of plants per unit ground area
           (in \code{plants / acre} can be estimated from the row spacing and the
diff --git a/tests/testthat/test-process.R b/tests/testthat/test-process.R
index 4a6cb82..aac269d 100644
--- a/tests/testthat/test-process.R
+++ b/tests/testthat/test-process.R
@@ -16,7 +16,7 @@ test_that("time is calculated only when possible", {
 
     expect_equal(
         process(harvest_point(doy = 1, hour = 12))$time,
-        1.5
+        BioCro::add_time_to_weather_data(list(doy = 1, hour = 12))$time
     )
 })
 
diff --git a/vignettes/handling_biomass_measurements.Rmd b/vignettes/handling_biomass_measurements.Rmd
index 0f4a8ae..16e8389 100644
--- a/vignettes/handling_biomass_measurements.Rmd
+++ b/vignettes/handling_biomass_measurements.Rmd
@@ -204,7 +204,7 @@ access_sheet('harvest')
 ```
 
 The sheet is also available via the `BioCroField`
-[GitHub website](https://github.com/biocro/BioCroField/blob/main/inst/sheets/).
+[GitHub website](https://github.com/biocro/BioCroField/tree/main/inst/sheets/).
 
 When using this sheet, it is recommended to electronically fill out any fields
 whose values are known beforehand (such as location, year, row spacing, name,
@@ -226,7 +226,7 @@ access_sheet('soybean_guide')
 ```
 
 They are also available via the `BioCroField`
-[GitHub website](https://github.com/biocro/BioCroField/blob/main/inst/sheets/).
+[GitHub website](https://github.com/biocro/BioCroField/tree/main/inst/sheets/).
 
 When using these sheets, it is recommended to print out one copy of each
 relevant crop guide so you can keep it on hand for reference while harvesting.

From 7da8a07fc33c68b3ac4fbe60d2f31f2f3e1a202f Mon Sep 17 00:00:00 2001
From: eloch216 <48919455+eloch216@users.noreply.github.com>
Date: Tue, 4 Feb 2025 12:42:20 -0600
Subject: [PATCH 4/8] Make sure all time calculations are consistent

---
 R/add_seed_biomass.R                   |  6 ++++--
 tests/testthat/test-add_seed_biomass.R | 16 ++++++++++++++++
 2 files changed, 20 insertions(+), 2 deletions(-)

diff --git a/R/add_seed_biomass.R b/R/add_seed_biomass.R
index ae1aedb..f11f986 100644
--- a/R/add_seed_biomass.R
+++ b/R/add_seed_biomass.R
@@ -157,8 +157,10 @@ add_seed_biomass <- function(
     initial_biomass[['year']] <- year
     initial_biomass[['doy']] <- doy
     initial_biomass[['hour']] <- hour
-    initial_biomass[['time']] <-
-        initial_biomass[['doy']] + initial_biomass[['hour']] / 24.0
+
+    time_list <- list(doy = doy, hour = hour)
+    time_list <- BioCro::add_time_to_weather_data(time_list)
+    initial_biomass[['time']] <- time_list[['time']]
 
     # Reset certain columns to zero; there is no leaf area when the plant is a
     # seed, so also make sure to set all LAI estimates to zero
diff --git a/tests/testthat/test-add_seed_biomass.R b/tests/testthat/test-add_seed_biomass.R
index 25b4d20..1c717ce 100644
--- a/tests/testthat/test-add_seed_biomass.R
+++ b/tests/testthat/test-add_seed_biomass.R
@@ -50,3 +50,19 @@ test_that("Seed biomass is properly added to tables", {
         2.47
     )
 })
+
+test_that("Time is calculated the same was as in `process`", {
+    doy = 12
+    hour = 3
+
+    biomass_df <- add_seed_biomass(
+        biomass_table(process(harvest_point(doy = doy, hour = hour))),
+        doy = doy,
+        hour = hour
+    )
+
+    expect_equal(
+        biomass_df$time[1],
+        biomass_df$time[2]
+    )
+})

From 7823875e75b42c199b687fed5a592775144e3c06 Mon Sep 17 00:00:00 2001
From: eloch216 <48919455+eloch216@users.noreply.github.com>
Date: Mon, 26 May 2025 10:52:28 -0500
Subject: [PATCH 5/8] Indicate development version

---
 DESCRIPTION | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index a863e8d..04ae3b6 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: BioCroField
-Version: 0.3.0
+Version: 0.3.0-0
 Title: Tools for BioCro Field Data
 Description: A collection of tools for processing field data related to BioCro
     crop growth simulations.

From 2614e026ee864d7a4c38ba064f7b3b5ca2a47779 Mon Sep 17 00:00:00 2001
From: eloch216 <48919455+eloch216@users.noreply.github.com>
Date: Wed, 18 Feb 2026 12:34:48 -0800
Subject: [PATCH 6/8] Allow partitioned leaf mass to be `NA`

---
 DESCRIPTION                         |  2 +-
 NEWS.md                             |  2 ++
 R/harvest_point.R                   |  2 ++
 tests/testthat/test-harvest_point.R | 10 ++++++++--
 tests/testthat/test-process.R       |  2 ++
 5 files changed, 15 insertions(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 04ae3b6..d3628d7 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: BioCroField
-Version: 0.3.0-0
+Version: 0.3.0-1
 Title: Tools for BioCro Field Data
 Description: A collection of tools for processing field data related to BioCro
     crop growth simulations.
diff --git a/NEWS.md b/NEWS.md
index cb42153..af5bf0a 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -22,6 +22,8 @@ for the next release.
   `biomass_table`.
 - Values of `time` are now calculated using `BioCro::add_time_to_weather_data`
   to ensure they are always consistent with BioCro's time definition.
+- Values of partitioned leaf mass can be set to `NA` when creating a
+  `harvest_point`, which is treated as if the leaf mass had not been provided.
 
 # BioCroField VERSION 0.3.0
 
diff --git a/R/harvest_point.R b/R/harvest_point.R
index 29f50fa..823d50a 100644
--- a/R/harvest_point.R
+++ b/R/harvest_point.R
@@ -190,6 +190,7 @@ harvest_point <- function(
     # Do not allow a leaf with zero area but nonzero mass
     if (!is.na(partitioning_leaf_area) && partitioning_leaf_area == 0 &&
         !is.null(partitioning_component_weights[['leaf']]) &&
+        !is.na(partitioning_component_weights[['leaf']]) &&
             partitioning_component_weights[['leaf']] > 0) {
         stop("It is not possible for a leaf with zero area to have a nonzero mass")
     }
@@ -197,6 +198,7 @@ harvest_point <- function(
     # Do not allow a leaf with zero mass but nonzero area
     if (!is.na(partitioning_leaf_area) && partitioning_leaf_area > 0 &&
         !is.null(partitioning_component_weights[['leaf']]) &&
+        !is.na(partitioning_component_weights[['leaf']]) &&
             partitioning_component_weights[['leaf']] == 0) {
         stop("It is not possible for a leaf with zero mass to have a nonzero area")
     }
diff --git a/tests/testthat/test-harvest_point.R b/tests/testthat/test-harvest_point.R
index 4294c06..4629837 100644
--- a/tests/testthat/test-harvest_point.R
+++ b/tests/testthat/test-harvest_point.R
@@ -156,12 +156,12 @@ test_that("Missing density parameters are automatically calculated", {
         harvest_point(row_spacing = 0.75, plant_spacing = 0.2)$planting_density,
         26980
     )
-    
+
     expect_equal(
         harvest_point(row_spacing = 0.75, planting_density = 26980)$plant_spacing,
         0.2
     )
-    
+
     expect_equal(
         harvest_point(plant_spacing = 0.2, planting_density = 26980)$row_spacing,
         0.75
@@ -218,3 +218,9 @@ test_that("Additional arguments must have length 1 and be numeric, character, or
         "The following inputs should have length 1, but do not: construct"
     )
 })
+
+test_that("Partitioned leaf mass can be NA when leaf area is numeric", {
+    expect_no_error(
+        harvest_point(partitioning_component_weights = list(leaf = NA), partitioning_leaf_area = 1)
+    )
+})
diff --git a/tests/testthat/test-process.R b/tests/testthat/test-process.R
index aac269d..7cdd549 100644
--- a/tests/testthat/test-process.R
+++ b/tests/testthat/test-process.R
@@ -122,6 +122,8 @@ test_that("LMA is calculated only when possible", {
     expect_na(hpp$LMA)
 
     expect_na(process(harvest_point(partitioning_leaf_area = 1))$LMA)
+    
+    expect_na(process(harvest_point(partitioning_component_weights = list(leaf = NA), partitioning_leaf_area = 1))$LMA)
 
     expect_na(process(harvest_point(partitioning_component_weights = list(leaf = 1)))$LMA)
 

From d458660f3827b66ce4c0f54484528bf3b0756c21 Mon Sep 17 00:00:00 2001
From: eloch216 <48919455+eloch216@users.noreply.github.com>
Date: Wed, 18 Feb 2026 12:41:55 -0800
Subject: [PATCH 7/8] Update dependencies

`testthat` needs R v4.1.0 or greater
---
 .github/workflows/R-CMD-check.yaml | 2 +-
 DESCRIPTION                        | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index c446e47..ede6f76 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -25,7 +25,7 @@ jobs:
           - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-latest,   r: 'release'}
           - {os: ubuntu-latest,   r: 'oldrel-1'}
-          - {os: ubuntu-latest,   r: '4.0.0'}
+          - {os: ubuntu-latest,   r: '4.1.0'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
diff --git a/DESCRIPTION b/DESCRIPTION
index d3628d7..f2c3448 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -12,7 +12,7 @@ Authors@R: c(
 License: MIT + file LICENSE
 Encoding: UTF-8
 LazyData: true
-Depends: R (>= 4.0.0)
+Depends: R (>= 4.1.0)
 Imports:
     rmarkdown,
     BioCro

From 311e79f68a763afa2cfcaaf2e4fd38398fda3226 Mon Sep 17 00:00:00 2001
From: eloch216 <48919455+eloch216@users.noreply.github.com>
Date: Wed, 18 Feb 2026 13:58:31 -0800
Subject: [PATCH 8/8] Release v0.4.0

---
 DESCRIPTION |  2 +-
 NEWS.md     | 12 ++++++------
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index f2c3448..6e23259 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: BioCroField
-Version: 0.3.0-1
+Version: 0.4.0
 Title: Tools for BioCro Field Data
 Description: A collection of tools for processing field data related to BioCro
     crop growth simulations.
diff --git a/NEWS.md b/NEWS.md
index af5bf0a..eb3b5f6 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -8,7 +8,7 @@ major.minor.patch structure of semantic versioning. When applicable, entries
 should include direct links to the relevant pull requests.
 
 Then, when a new release is made, "# Unreleased" should be replaced by a heading
-with the new version number, such as "# CHANGES IN BioCroField VERSION 2.0.0."
+with the new version number, such as "# BioCroField version 2.0.0."
 This section will combine all of the release notes from all of the pull requests
 merged in since the previous release.
 
@@ -16,7 +16,7 @@ Subsequent commits will then include a new "Unreleased" section in preparation
 for the next release.
 -->
 
-# UNRELEASED
+# BioCroField version 0.4.0
 
 - It is now possible to specify extra columns to be returned in the output from
   `biomass_table`.
@@ -25,7 +25,7 @@ for the next release.
 - Values of partitioned leaf mass can be set to `NA` when creating a
   `harvest_point`, which is treated as if the leaf mass had not been provided.
 
-# BioCroField VERSION 0.3.0
+# BioCroField version 0.3.0
 
 - LMA is now included in the output from `biomass_table`.
 - New crop-specific guides to harvesting and weighing are now available, along
@@ -35,7 +35,7 @@ for the next release.
 - A new vignette has been added (`images_from_the_field`) that illustrates
   parts of the harvesting and weighing process using pictures from the field.
 
-# BioCroField VERSION 0.2.0
+# BioCroField version 0.2.0
 
 - Two new methods for estimating LAI were added to `process`:
   `LAI_from_planting_density` and `LAI_from_measured_population`. The original
@@ -54,7 +54,7 @@ for the next release.
   - https://github.com/biocro/BioCroField/pull/4
   - https://github.com/biocro/BioCroField/pull/5
 
-# BioCroField VERSION 0.1.1
+# BioCroField version 0.1.1
 
 - A bug related to partial name matching for partitioning components was
   detected and fixed. In short, if a value of `leaf` mass was not supplied but
@@ -66,7 +66,7 @@ for the next release.
 - PRs related to creating this version:
   - https://github.com/biocro/BioCroField/pull/2
 
-# BioCroField VERSION 0.1.0
+# BioCroField version 0.1.0
 
 - This is the first version of BioCroField. At this point, the package is in a
   state of rapid development, and not all changes will be described here.