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PAS

Produced data and code used in the PAS project: Xing J, Gumerov VM, Zhulin IB. Origin and functional diversification of PAS domain, a ubiquitous intracellular sensor. Sci Adv. 2023;9(35):eadi4517. doi:10.1126/sciadv.adi4517.

  • "PAS_clusters" contains sequences (in fasta format), alphafold structures, sequence logos, and distances for clusters, as well as a summary of all clusters.

  • "PAS_phylogenetic_trees" contains multiple sequence alignments and phylogenetic trees used for tree building.

  • "Scripts" contains all Python scripts used for analyses on PAS domain distributions.

  • "Cluster_HMMs.zip" contains HMM for each cluster.

  • "PAS domain sequences.zip" contains all sequences used for clustering (in fasta format).