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translated_sequences.md

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Original Sequence

>TRINITY_DN279_c0_g1_i4 len=701 path=[1:0-89 3:90-90 4:91-327 7:328-423 8:424-700]
GGAGCTTCTAGCACTGGGTCTGTCCTTTTTACTGAATCGAAAGAATGATTACGATTGATAAATGAAGAGTACAGTATTGACATATTTTACCAAATGTGAATTCCTCTGTTGGCAAACCCGATGCAGAAAGAGCGGCAATTGCTGCAGAAGGCCCAGGAATGGGAATAACAGGGATTTTTTCAGTCGCGCATAGTCTAGCCAGCTCCATGCCAGGGTCACTGATGCCTGGAGTACCAGCATCACTAATCACTGCAATTGCTTCCCCTTCATGGAGCCTCTTTAAGATAATGGGCTCTCTCTCTCGTTCGTTGAACTTATGGAAGCTGAGAAGAGGTGTTTTGATGTTGTAATGCTGAAGTAACTTTCCAGAATGCCTTGTGTCTTCAGAGAGTATCACATGAGCACATTTCAGAACACGCAATGCCCTCAAGGTGATATCCTCGAGGTTCCCTATGGGTGTCGCCACTAGATACAACCCCGACTCCAAATCCGTTTCCGAGGCCCGCTGCTCCGGCGAGCCGTTCGAGGCGGCAGCAGGGAGGCGGCGAGGGAGCGGAGACGCAACTGCTGCGGCACAGCGGAGATGGGATGGGAGACGGCGGGGAGTGGCCAGCGTAAGGGAGAAGAGGGCCTGGAGGCGGAGCAGAGACGCCATTGGCGGCGGCCACGCGGGGATAGTTGTCGGGATAAGTCTAAGAGAT

From GFF (only CDS)

>TRINITY_DN279_c0_g1_i4.mrna1 gene=TRINITY_DN279_c0_g1_i4 Name=TRINITY_DN279_c0_g1_i4 coverage=99.4 identity=100.0 matches=697 mismatches=0 indels=0 unknowns=0 Name=TRINITY_DN279_c0_g1_i4 coverage=99.4 identity=100.0 matches=697 mismatches=0 indels=0 unknowns=0
cttagacttatcccgacaactatccccgcgtggccgccgccaatggcgtctctgctccgcctccaggccc
tcttctcccttacgctggccactccccgccgtctcccatcccatctccgctgtgccgcagcagttgcgtc
tccgctccctcgccgcctccctgctgccgcctcgaacggctcgccggagcagcgggcctcggaaacggat
ttggagtcggggttgtatctagtggcgacacccatagggaacctcgaggatatcaccttgagggcattgc
gtgttctgaaatgtgctcatgtgatactctctgaagacacaaggcattctggaaagttacttcagcatta
caacatcaaaacacctcttctcagcttccataagttcaacgaacgagagagagagcccattatcttaaag
aggctccatgaaggggaagcaattgcagtgattagtgatgctggtactccaggcatcagtgaccctggca
tggagctggctagactatgcgcgactgaaaaaatccctgttattcccattcctgggccttctgcagcaat
tgccgctctttctgcatcgggtttgccaacagaggaattcacatttggtaaaatatgtcaatactgtact
cttcatttatcaatcgtaatcattctttcgattcagtaa

Gold Standard (From GFF translated)

>TRINITY_DN279_c0_g1_i4.mrna1 gene=TRINITY_DN279_c0_g1_i4 Name=TRINITY_DN279_c0_g1_i4 coverage=99.4 identity=100.0 matches=697 mismatches=0 indels=0 unknowns=0
LRLIPTTIPAWPPPMASLLRLQALFSLTLATPRRLPSHLRCAAAVASPLPRRLPAAASNGSPEQRASETD
LESGLYLVATPIGNLEDITLRALRVLKCAHVILSEDTRHSGKLLQHYNIKTPLLSFHKFNEREREPIILK
RLHEGEAIAVISDAGTPGISDPGMELARLCATEKIPVIPIPGPSAAIAALSASGLPTEEFTFGKICQYCT
LHLSIVIILSIQ.

Six alternative splicing (we don't have a reference).

>TRINITY_DN279_c0_g1_i4 len=701 path=[1:0-89 3:90-90 4:91-327 7:328-423 8:424-700] (1+)
GASSTGSVLFTESKE*LRLINEEYSIDIFYQM*IPLLANPMQKERQLLQKAQEWE*QGFF
QSRIV*PAPCQGH*CLEYQHH*SLQLLPLHGASLR*WALSLVR*TYGS*EEVF*CCNAEV
TFQNALCLQRVSHEHISEHAMPSR*YPRGSLWVSPLDTTPTPNPFPRPAAPASRSRRQQG
GGEGAETQLLRHSGDGMGDGGEWPA*GRRGPGGGAETPLAAATRG*LSG*V*E
>TRINITY_DN279_c0_g1_i4 len=701 path=[1:0-89 3:90-90 4:91-327 7:328-423 8:424-700] (2+)
ELLALGLSFLLNRKNDYD**MKSTVLTYFTKCEFLCWQTRCRKSGNCCRRPRNGNNRDFF
SRA*SSQLHARVTDAWSTSITNHCNCFPFMEPL*DNGLSLSFVELMEAEKRCFDVVMLK*
LSRMPCVFREYHMSTFQNTQCPQGDILEVPYGCRH*IQPRLQIRFRGPLLRRAVRGGSRE
AARERRRNCCGTAEMGWETAGSGQRKGEEGLEAEQRRHWRRPRGDSCRDKSKR
>TRINITY_DN279_c0_g1_i4 len=701 path=[1:0-89 3:90-90 4:91-327 7:328-423 8:424-700] (3+)
SF*HWVCPFY*IERMITIDK*RVQY*HILPNVNSSVGKPDAERAAIAAEGPGMGITGIFS
VAHSLASSMPGSLMPGVPASLITAIASPSWSLFKIMGSLSRSLNLWKLRRGVLML*C*SN
FPECLVSSESIT*AHFRTRNALKVISSRFPMGVATRYNPDSKSVSEARCSGEPFEAAAGR
RRGSGDATAAAQRRWDGRRRGVASVREKRAWRRSRDAIGGGHAGIVVGISLRD
>TRINITY_DN279_c0_g1_i4 len=701 path=[1:0-89 3:90-90 4:91-327 7:328-423 8:424-700] (1-)
IS*TYPDNYPRVAAANGVSAPPPGPLLPYAGHSPPSPIPSPLCRSSCVSAPSPPPCCRLE
RLAGAAGLGNGFGVGVVSSGDTHREPRGYHLEGIACSEMCSCDTL*RHKAFWKVTSALQH
QNTSSQLP*VQRTRERAHYLKEAP*RGSNCSD**CWYSRHQ*PWHGAG*TMRD*KNPCYS
HSWAFCSNCRSFCIGFANRGIHIW*NMSILYSSFINRNHSFDSVKRTDPVLEA
>TRINITY_DN279_c0_g1_i4 len=701 path=[1:0-89 3:90-90 4:91-327 7:328-423 8:424-700] (2-)
SLRLIPTTIPAWPPPMASLLRLQALFSLTLATPRRLPSHLRCAAAVASPLPRRLPAAASN
GSPEQRASETDLESGLYLVATPIGNLEDITLRALRVLKCAHVILSEDTRHSGKLLQHYNI
KTPLLSFHKFNEREREPIILKRLHEGEAIAVISDAGTPGISDPGMELARLCATEKIPVIP
IPGPSAAIAALSASGLPTEEFTFGKICQYCTLHLSIVIILSIQ*KGQTQC*KL
>TRINITY_DN279_c0_g1_i4 len=701 path=[1:0-89 3:90-90 4:91-327 7:328-423 8:424-700] (3-)
LLDLSRQLSPRGRRQWRLCSASRPSSPLRWPLPAVSHPISAVPQQLRLRSLAASLLPPRT
ARRSSGPRKRIWSRGCI*WRHP*GTSRISP*GHCVF*NVLM*YSLKTQGILESYFSITTS
KHLFSASISSTNERESPLS*RGSMKGKQLQ*LVMLVLQASVTLAWSWLDYARLKKSLLFP
FLGLLQQLPLFLHRVCQQRNSHLVKYVNTVLFIYQS*SFFRFSKKDRPSARSS