INSTALL.md

First Install Docker

On macOS and Linux

         docker run --rm -v $PWD:$PWD -w $PWD joan/3dna python -m 3dna data/plasmid_8k.fasta

On Windows

1. open a PowerShell and run:

         wsl --update

2. Restart your computer

3. Run Docker Desktop

4. In a PowerShell:

         docker run --rm -v <absolute_path_with_/_instead_of_\>:/3dna joan/3dna bash -c 'cd /3dna ; python -m 3dna data/plasmid_8k.fasta'

On ARM64 (Apple silicon)

1. Build a new Docker image:

         docker build -t 3dna .

2. Run the new image:   docker run --rm -v $PWD:$PWD -w $PWD 3dna python -m 3dna data/plasmid_8k.fasta

         Install first Miniconda.

         conda env create -f environment.yml

        Then,

             conda run -n 3dna python -m 3dna data/plasmid_8k.fasta

        or

             conda activate 3dna

             python -m 3dna data/plasmid_8k.fasta