There appears to be an issue in the vsVolcano function at line 250: aes(label = id, x = logFC, y = padj),
I believe this should be: aes(label = id, x = logFC, y = -log10(padj)) in order for the correct points to be highlighted.
Edit: There is a similar issue at line 258: aes(x = logFC, y = padj)
There appears to be an issue in the vsVolcano function at line 250: aes(label = id, x = logFC, y = padj),
I believe this should be: aes(label = id, x = logFC, y = -log10(padj)) in order for the correct points to be highlighted.
Edit: There is a similar issue at line 258: aes(x = logFC, y = padj)