陈老师你好:
Can not open file /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/1.RepeatMasker/repeatMasker_Dfam/para_RepeatMasker.tmp/seq_1/seq_1.fasta.out, No such file or directory at /opt/biosoft/geta/bin/para_RepeatMasker line 167.
Can not open file /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/1.RepeatMasker/repeatMasker_RepBase/para_RepeatMasker.tmp/seq_1/seq_1.fasta.out, No such file or directory at /opt/biosoft/geta/bin/para_RepeatMasker line 167.
RepeatMasker version 4.1.6
RepeatMasker version 4.1.6
Search Engine: HMMER [ 3.3.2 (Nov 2020) ]
程序使用了临时文件目录:
/dev/shm/paraFly_tmp_20250424191436_1085998.Success
/dev/shm/paraFly_tmp_20250424191436_1085998.Failed
程序将对 1 个命令进行并行化运算。
Thu Apr 24 19:14:36 2025还剩下 1 个任务,当前 0 个任务正在运行中; 程序使用了临时文件目录:
/dev/shm/paraFly_tmp_20250424191436_1085999.Success
/dev/shm/paraFly_tmp_20250424191436_1085999.Failed
failed to execute: /opt/biosoft/geta/bin/homolog_prediction --tmp_dir /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction --cpu 40 --identity 0.2 --evalue 1e-9 --homolog_coverage 0.3 --max_hits_num_per_match_region 10 --max_hit_num_per_single_species 2 --method exonerate,genewise,gth --threshod_ratio_of_intron_Supported_times 0.0 --genetic_code 1 --output_alignment_GFF3 /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction/homolog_alignment.gff3 --output_raw_GFF3 /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction/homolog_prediction.raw.gff3 /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/homolog.fasta /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/genome.fasta > /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction/homolog_prediction.gff3 2> /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction/homolog_prediction.log
按照您的安装步骤装了所有依赖,但是不知道为什么,子程序它怎么都打不开我目录底下的软件,陈老师能否给出解决方案呢?
陈老师你好:
Can not open file /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/1.RepeatMasker/repeatMasker_Dfam/para_RepeatMasker.tmp/seq_1/seq_1.fasta.out, No such file or directory at /opt/biosoft/geta/bin/para_RepeatMasker line 167.
Can not open file /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/1.RepeatMasker/repeatMasker_RepBase/para_RepeatMasker.tmp/seq_1/seq_1.fasta.out, No such file or directory at /opt/biosoft/geta/bin/para_RepeatMasker line 167.
RepeatMasker version 4.1.6
RepeatMasker version 4.1.6
Search Engine: HMMER [ 3.3.2 (Nov 2020) ]
程序使用了临时文件目录:
/dev/shm/paraFly_tmp_20250424191436_1085998.Success
/dev/shm/paraFly_tmp_20250424191436_1085998.Failed
程序将对 1 个命令进行并行化运算。
Thu Apr 24 19:14:36 2025还剩下 1 个任务,当前 0 个任务正在运行中; 程序使用了临时文件目录:
/dev/shm/paraFly_tmp_20250424191436_1085999.Success
/dev/shm/paraFly_tmp_20250424191436_1085999.Failed
failed to execute: /opt/biosoft/geta/bin/homolog_prediction --tmp_dir /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction --cpu 40 --identity 0.2 --evalue 1e-9 --homolog_coverage 0.3 --max_hits_num_per_match_region 10 --max_hit_num_per_single_species 2 --method exonerate,genewise,gth --threshod_ratio_of_intron_Supported_times 0.0 --genetic_code 1 --output_alignment_GFF3 /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction/homolog_alignment.gff3 --output_raw_GFF3 /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction/homolog_prediction.raw.gff3 /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/homolog.fasta /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/genome.fasta > /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction/homolog_prediction.gff3 2> /mnt/sdh/01.server_68_data/08.NC_micrantha_bak/geta_test/out.tmp/2.homolog_prediction/homolog_prediction.log
按照您的安装步骤装了所有依赖,但是不知道为什么,子程序它怎么都打不开我目录底下的软件,陈老师能否给出解决方案呢?