Hi I work for the Fda and we are trying to use lexmapr wrapper on the galaxy test tool shed doesn't except the argument -p ifsac.
When I added -p ifsac the wrapper I get the following error
usage: lexmapr [-h] [-o [OUTPUT]] [-f FORMAT] [--version] [-c CONFIG] [-b]
[input_file]
lexmapr: error: unrecognized arguments: -p ifsac
below is the following command that is sent to the galaxy command line to run lexmapr
lexmapr '/gal2009/galaxy/database/files2/e/d/8/dataset_ed8da00b-e32d-4270-8a11-7cf497c8128a.dat' -p ifsac > '/gal2009/galaxy/database/files1/8/a/a/dataset_8aa644ef-2d9e-4c95-9458-8e7efb8b5573.dat'
When I run the same command on a local installed lexmpar I get the correct output.
It looks like the Bionconda version and repo for galaxy is not configured properly.
Hi I work for the Fda and we are trying to use lexmapr wrapper on the galaxy test tool shed doesn't except the argument -p ifsac.
When I added -p ifsac the wrapper I get the following error
usage: lexmapr [-h] [-o [OUTPUT]] [-f FORMAT] [--version] [-c CONFIG] [-b]
[input_file]
lexmapr: error: unrecognized arguments: -p ifsac
below is the following command that is sent to the galaxy command line to run lexmapr
lexmapr '/gal2009/galaxy/database/files2/e/d/8/dataset_ed8da00b-e32d-4270-8a11-7cf497c8128a.dat' -p ifsac > '/gal2009/galaxy/database/files1/8/a/a/dataset_8aa644ef-2d9e-4c95-9458-8e7efb8b5573.dat'
When I run the same command on a local installed lexmpar I get the correct output.
It looks like the Bionconda version and repo for galaxy is not configured properly.