From ab135911d91ef9d747cb6aa8dc510685e3531dea Mon Sep 17 00:00:00 2001 From: Sima Rahimi <54620700+sima-r@users.noreply.github.com> Date: Fri, 19 Sep 2025 15:06:19 +0200 Subject: [PATCH 1/4] Create DI_ADT.md Added full list of ADT indexes both forward and reverse --- data/test/DI_ADT.md | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 data/test/DI_ADT.md diff --git a/data/test/DI_ADT.md b/data/test/DI_ADT.md new file mode 100644 index 0000000..b77174d --- /dev/null +++ b/data/test/DI_ADT.md @@ -0,0 +1,26 @@ +| Name | i5 Full Sequence | i7 Full Sequence | Index1 | Index2 (Forward Strand Workflow) | Index2 (Reverse Complement Workflow) | +|----------|-------------------------------------------------------------------|-------------------------------------------------------------------|------------|-------------------------------|---------------------------------------| +| DI_ADT1 | AATGATACGGCGACCACCGAGATCTACACCGTAGAGCAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGCGAGTAGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCTACTCGCG | CGTAGAGCAG | CTGCTCTACG | +| DI_ADT2 | AATGATACGGCGACCACCGAGATCTACACGACGAGATGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTAGCGCAGAGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CTCTGCGCTA | GACGAGATGC | GCATCTCGTC | +| DI_ADT3 | AATGATACGGCGACCACCGAGATCTACACGATGGCGAACACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAAGCTGCGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCGCAGCTTC | GATGGCGAAC | GTTCGCCATC | +| DI_ADT4 | AATGATACGGCGACCACCGAGATCTACACCGAACGATGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGGCGACTAGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CTAGTCGCCT | CGAACGATGG | CCATCGTTCG | +| DI_ADT5 | AATGATACGGCGACCACCGAGATCTACACGATGGAACCGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGCAATGAGCGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GCTCATTGCC | GATGGAACCG | CGGTTCCATC | +| DI_ADT6 | AATGATACGGCGACCACCGAGATCTACACAGACCGGTGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCAGGTAAGCGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGCTTACCTG | AGACCGGTGA | TCACCGGTCT | +| DI_ADT7 | AATGATACGGCGACCACCGAGATCTACACGAGGAAGCCTACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGTAACGCGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCGCGTTACC | GAGGAAGCCT | AGGCTTCCTC | +| DI_ADT8 | AATGATACGGCGACCACCGAGATCTACACCGACGGATGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAACTGGAGCGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGCTCCAGTT | CGACGGATGA | TCATCCGTCG | +| DI_ADT9 | AATGATACGGCGACCACCGAGATCTACACCAGGCAGTAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGGAACTAGGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CCTAGTTCCG | CAGGCAGTAG | CTACTGCCTG | +| DI_ADT10 | AATGATACGGCGACCACCGAGATCTACACGGCAGTCAGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCAGGTAGCAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TGCTACCTGC | GGCAGTCAGA | TCTGACTGCC | +| DI_ADT11 | AATGATACGGCGACCACCGAGATCTACACCGAGGACGATACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGAGCAGAGTGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | ACTCTGCTCG | CGAGGACGAT | ATCGTCCTCG | +| DI_ADT12 | AATGATACGGCGACCACCGAGATCTACACGAGCCGTAGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCGAGGATCAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TGATCCTCGC | GAGCCGTAGA | TCTACGGCTC | +| DI_ADT13 | AATGATACGGCGACCACCGAGATCTACACCAGAGATCGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGAGACCGTGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CACGGTCTCT | CAGAGATCGG | CCGATCTCTG | +| DI_ADT14 | AATGATACGGCGACCACCGAGATCTACACCTCAGAGGAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAGCGGTAACGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GTTACCGCTC | CTCAGAGGAG | CTCCTCTGAG | +| DI_ADT15 | AATGATACGGCGACCACCGAGATCTACACCAGTGAGGACACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGATAGCAGGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CCTGCTATCG | CAGTGAGGAC | GTCCTCACTG | +| DI_ADT16 | AATGATACGGCGACCACCGAGATCTACACGGAAGACCGTACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAGAGCGTACGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GTACGCTCTC | GGAAGACCGT | ACGGTCTTCC | +| DI_ADT17 | AATGATACGGCGACCACCGAGATCTACACAAGCCGGTAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGAGGACTGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CAGTCCTCGT | AAGCCGGTAG | CTACCGGCTT | +| DI_ADT18 | AATGATACGGCGACCACCGAGATCTACACGGACGATAGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTGAGCAGGACGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GTCCTGCTCA | GGACGATAGC | GCTATCGTCC | +| DI_ADT19 | AATGATACGGCGACCACCGAGATCTACACATGGCGCAAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGGCGTAGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCTACGCCGT | ATGGCGCAAG | CTTGCGCCAT | +| DI_ADT20 | AATGATACGGCGACCACCGAGATCTACACGAGATCCGGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTGAAGACGCGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGCGTCTTCA | GAGATCCGGA | TCCGGATCTC | +| DI_ADT21 | AATGATACGGCGACCACCGAGATCTACACAGCCAGTGAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCATGGAAGCGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GCTTCCATGC | AGCCAGTGAG | CTCACTGGCT | +| DI_ADT22 | AATGATACGGCGACCACCGAGATCTACACGATGACACGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCTGGACAGAGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CTCTGTCCAG | GATGACACGG | CCGTGTCATC | +| DI_ADT23 | AATGATACGGCGACCACCGAGATCTACACAGTAGAGGCCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTAAGGAGCGCGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GCGCTCCTTA | AGTAGAGGCC | GGCCTCTACT | +| DI_ADT24 | AATGATACGGCGACCACCGAGATCTACACGCTGAACAGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGGAGTAACGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGTTACTCCG | GCTGAACAGG | CCTGTTCAGC | From 3058f925ac47e117fd954a99525eb0198bd28aa7 Mon Sep 17 00:00:00 2001 From: Sima Rahimi <54620700+sima-r@users.noreply.github.com> Date: Fri, 19 Sep 2025 15:09:52 +0200 Subject: [PATCH 2/4] Create DI_HTO.md --- data/test/DI_HTO.md | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 data/test/DI_HTO.md diff --git a/data/test/DI_HTO.md b/data/test/DI_HTO.md new file mode 100644 index 0000000..94e4962 --- /dev/null +++ b/data/test/DI_HTO.md @@ -0,0 +1,14 @@ +| Name | Full Sequence i5 | Full Sequence i7 | Index1 | Index2 (Forward Strand Workflow) | Index2 (Reverse Complement Workflow) | +|----------|-------------------------------------------------------------------|-------------------------------------------------------------------|------------|-------------------------------|---------------------------------------| +| DI_HTO1 | AATGATACGGCGACCACCGAGATCTACACCGAAGGTCAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGCGTGAAGCGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | GCTTCACGCT | CGAAGGTCAG | CTGACCTTCG | +| DI_HTO2 | AATGATACGGCGACCACCGAGATCTACACGAGTAACGGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAGACCTGAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTCAGGTCTC | GAGTAACGGC | GCCGTTACTC | +| DI_HTO3 | AATGATACGGCGACCACCGAGATCTACACTGCAAGGACGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGTCGCAGAGAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TCTCTGCGAC | TGCAAGGACG | CGTCCTTGCA | +| DI_HTO4 | AATGATACGGCGACCACCGAGATCTACACAATGGACGGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAAGCGTCGAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTCGACGCTT | AATGGACGGC | GCCGTCCATT | +| DI_HTO5 | AATGATACGGCGACCACCGAGATCTACACGGCGATACAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGAGGACCTAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TAGGTCCTCC | GGCGATACAG | CTGTATCGCC | +| DI_HTO6 | AATGATACGGCGACCACCGAGATCTACACCAGAGCTGGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGACGTGAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTCACGTCGT | CAGAGCTGGA | TCCAGCTCTG | +| DI_HTO7 | AATGATACGGCGACCACCGAGATCTACACAGGTGGCCAAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGCGAGACTAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TAGTCTCGCC | AGGTGGCCAA | TTGGCCACCT | +| DI_HTO8 | AATGATACGGCGACCACCGAGATCTACACGAACCAGTGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGCGAGGATGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | ATCCTCGCGT | GAACCAGTGG | CCACTGGTTC | +| DI_HTO9 | AATGATACGGCGACCACCGAGATCTACACCGAGGTGACAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCGGCGATAAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TTATCGCCGC | CGAGGTGACA | TGTCACCTCG | +| DI_HTO10 | AATGATACGGCGACCACCGAGATCTACACGCGAAACGGTACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGACGAGCTGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CAGCTCGTCT | GCGAAACGGT | ACCGTTTCGC | +| DI_HTO11 | AATGATACGGCGACCACCGAGATCTACACGGCTGCGAAAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGCAAGCTAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTAGCTTGCC | GGCTGCGAAA | TTTCGCAGCC | +| DI_HTO12 | AATGATACGGCGACCACCGAGATCTACACAAGCAGCTGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAAGTGCGAGCGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | GCTCGCACTT | AAGCAGCTGG | CCAGCTGCTT | From acbffeb5e50c82fc089beb6a4d13920e8f5a1d3d Mon Sep 17 00:00:00 2001 From: sima-r Date: Fri, 19 Sep 2025 15:13:28 +0200 Subject: [PATCH 3/4] moved files --- data/DI_ADT.md | 26 ++++++++++++++++++++++++++ data/DI_HTO.md | 14 ++++++++++++++ 2 files changed, 40 insertions(+) create mode 100644 data/DI_ADT.md create mode 100644 data/DI_HTO.md diff --git a/data/DI_ADT.md b/data/DI_ADT.md new file mode 100644 index 0000000..b77174d --- /dev/null +++ b/data/DI_ADT.md @@ -0,0 +1,26 @@ +| Name | i5 Full Sequence | i7 Full Sequence | Index1 | Index2 (Forward Strand Workflow) | Index2 (Reverse Complement Workflow) | +|----------|-------------------------------------------------------------------|-------------------------------------------------------------------|------------|-------------------------------|---------------------------------------| +| DI_ADT1 | AATGATACGGCGACCACCGAGATCTACACCGTAGAGCAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGCGAGTAGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCTACTCGCG | CGTAGAGCAG | CTGCTCTACG | +| DI_ADT2 | AATGATACGGCGACCACCGAGATCTACACGACGAGATGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTAGCGCAGAGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CTCTGCGCTA | GACGAGATGC | GCATCTCGTC | +| DI_ADT3 | AATGATACGGCGACCACCGAGATCTACACGATGGCGAACACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAAGCTGCGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCGCAGCTTC | GATGGCGAAC | GTTCGCCATC | +| DI_ADT4 | AATGATACGGCGACCACCGAGATCTACACCGAACGATGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGGCGACTAGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CTAGTCGCCT | CGAACGATGG | CCATCGTTCG | +| DI_ADT5 | AATGATACGGCGACCACCGAGATCTACACGATGGAACCGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGCAATGAGCGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GCTCATTGCC | GATGGAACCG | CGGTTCCATC | +| DI_ADT6 | AATGATACGGCGACCACCGAGATCTACACAGACCGGTGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCAGGTAAGCGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGCTTACCTG | AGACCGGTGA | TCACCGGTCT | +| DI_ADT7 | AATGATACGGCGACCACCGAGATCTACACGAGGAAGCCTACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGTAACGCGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCGCGTTACC | GAGGAAGCCT | AGGCTTCCTC | +| DI_ADT8 | AATGATACGGCGACCACCGAGATCTACACCGACGGATGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAACTGGAGCGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGCTCCAGTT | CGACGGATGA | TCATCCGTCG | +| DI_ADT9 | AATGATACGGCGACCACCGAGATCTACACCAGGCAGTAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGGAACTAGGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CCTAGTTCCG | CAGGCAGTAG | CTACTGCCTG | +| DI_ADT10 | AATGATACGGCGACCACCGAGATCTACACGGCAGTCAGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCAGGTAGCAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TGCTACCTGC | GGCAGTCAGA | TCTGACTGCC | +| DI_ADT11 | AATGATACGGCGACCACCGAGATCTACACCGAGGACGATACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGAGCAGAGTGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | ACTCTGCTCG | CGAGGACGAT | ATCGTCCTCG | +| DI_ADT12 | AATGATACGGCGACCACCGAGATCTACACGAGCCGTAGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCGAGGATCAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TGATCCTCGC | GAGCCGTAGA | TCTACGGCTC | +| DI_ADT13 | AATGATACGGCGACCACCGAGATCTACACCAGAGATCGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGAGACCGTGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CACGGTCTCT | CAGAGATCGG | CCGATCTCTG | +| DI_ADT14 | AATGATACGGCGACCACCGAGATCTACACCTCAGAGGAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAGCGGTAACGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GTTACCGCTC | CTCAGAGGAG | CTCCTCTGAG | +| DI_ADT15 | AATGATACGGCGACCACCGAGATCTACACCAGTGAGGACACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGATAGCAGGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CCTGCTATCG | CAGTGAGGAC | GTCCTCACTG | +| DI_ADT16 | AATGATACGGCGACCACCGAGATCTACACGGAAGACCGTACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAGAGCGTACGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GTACGCTCTC | GGAAGACCGT | ACGGTCTTCC | +| DI_ADT17 | AATGATACGGCGACCACCGAGATCTACACAAGCCGGTAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGAGGACTGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CAGTCCTCGT | AAGCCGGTAG | CTACCGGCTT | +| DI_ADT18 | AATGATACGGCGACCACCGAGATCTACACGGACGATAGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTGAGCAGGACGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GTCCTGCTCA | GGACGATAGC | GCTATCGTCC | +| DI_ADT19 | AATGATACGGCGACCACCGAGATCTACACATGGCGCAAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGGCGTAGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCTACGCCGT | ATGGCGCAAG | CTTGCGCCAT | +| DI_ADT20 | AATGATACGGCGACCACCGAGATCTACACGAGATCCGGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTGAAGACGCGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGCGTCTTCA | GAGATCCGGA | TCCGGATCTC | +| DI_ADT21 | AATGATACGGCGACCACCGAGATCTACACAGCCAGTGAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCATGGAAGCGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GCTTCCATGC | AGCCAGTGAG | CTCACTGGCT | +| DI_ADT22 | AATGATACGGCGACCACCGAGATCTACACGATGACACGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCTGGACAGAGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CTCTGTCCAG | GATGACACGG | CCGTGTCATC | +| DI_ADT23 | AATGATACGGCGACCACCGAGATCTACACAGTAGAGGCCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTAAGGAGCGCGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GCGCTCCTTA | AGTAGAGGCC | GGCCTCTACT | +| DI_ADT24 | AATGATACGGCGACCACCGAGATCTACACGCTGAACAGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGGAGTAACGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGTTACTCCG | GCTGAACAGG | CCTGTTCAGC | diff --git a/data/DI_HTO.md b/data/DI_HTO.md new file mode 100644 index 0000000..94e4962 --- /dev/null +++ b/data/DI_HTO.md @@ -0,0 +1,14 @@ +| Name | Full Sequence i5 | Full Sequence i7 | Index1 | Index2 (Forward Strand Workflow) | Index2 (Reverse Complement Workflow) | +|----------|-------------------------------------------------------------------|-------------------------------------------------------------------|------------|-------------------------------|---------------------------------------| +| DI_HTO1 | AATGATACGGCGACCACCGAGATCTACACCGAAGGTCAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGCGTGAAGCGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | GCTTCACGCT | CGAAGGTCAG | CTGACCTTCG | +| DI_HTO2 | AATGATACGGCGACCACCGAGATCTACACGAGTAACGGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAGACCTGAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTCAGGTCTC | GAGTAACGGC | GCCGTTACTC | +| DI_HTO3 | AATGATACGGCGACCACCGAGATCTACACTGCAAGGACGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGTCGCAGAGAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TCTCTGCGAC | TGCAAGGACG | CGTCCTTGCA | +| DI_HTO4 | AATGATACGGCGACCACCGAGATCTACACAATGGACGGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAAGCGTCGAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTCGACGCTT | AATGGACGGC | GCCGTCCATT | +| DI_HTO5 | AATGATACGGCGACCACCGAGATCTACACGGCGATACAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGAGGACCTAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TAGGTCCTCC | GGCGATACAG | CTGTATCGCC | +| DI_HTO6 | AATGATACGGCGACCACCGAGATCTACACCAGAGCTGGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGACGTGAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTCACGTCGT | CAGAGCTGGA | TCCAGCTCTG | +| DI_HTO7 | AATGATACGGCGACCACCGAGATCTACACAGGTGGCCAAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGCGAGACTAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TAGTCTCGCC | AGGTGGCCAA | TTGGCCACCT | +| DI_HTO8 | AATGATACGGCGACCACCGAGATCTACACGAACCAGTGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGCGAGGATGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | ATCCTCGCGT | GAACCAGTGG | CCACTGGTTC | +| DI_HTO9 | AATGATACGGCGACCACCGAGATCTACACCGAGGTGACAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCGGCGATAAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TTATCGCCGC | CGAGGTGACA | TGTCACCTCG | +| DI_HTO10 | AATGATACGGCGACCACCGAGATCTACACGCGAAACGGTACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGACGAGCTGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CAGCTCGTCT | GCGAAACGGT | ACCGTTTCGC | +| DI_HTO11 | AATGATACGGCGACCACCGAGATCTACACGGCTGCGAAAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGCAAGCTAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTAGCTTGCC | GGCTGCGAAA | TTTCGCAGCC | +| DI_HTO12 | AATGATACGGCGACCACCGAGATCTACACAAGCAGCTGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAAGTGCGAGCGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | GCTCGCACTT | AAGCAGCTGG | CCAGCTGCTT | From 42302f0487967584861946226a36e330d4b8c95b Mon Sep 17 00:00:00 2001 From: sima-r Date: Fri, 19 Sep 2025 15:14:10 +0200 Subject: [PATCH 4/4] removed files --- data/test/DI_ADT.md | 26 -------------------------- data/test/DI_HTO.md | 14 -------------- 2 files changed, 40 deletions(-) delete mode 100644 data/test/DI_ADT.md delete mode 100644 data/test/DI_HTO.md diff --git a/data/test/DI_ADT.md b/data/test/DI_ADT.md deleted file mode 100644 index b77174d..0000000 --- a/data/test/DI_ADT.md +++ /dev/null @@ -1,26 +0,0 @@ -| Name | i5 Full Sequence | i7 Full Sequence | Index1 | Index2 (Forward Strand Workflow) | Index2 (Reverse Complement Workflow) | -|----------|-------------------------------------------------------------------|-------------------------------------------------------------------|------------|-------------------------------|---------------------------------------| -| DI_ADT1 | AATGATACGGCGACCACCGAGATCTACACCGTAGAGCAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGCGAGTAGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCTACTCGCG | CGTAGAGCAG | CTGCTCTACG | -| DI_ADT2 | AATGATACGGCGACCACCGAGATCTACACGACGAGATGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTAGCGCAGAGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CTCTGCGCTA | GACGAGATGC | GCATCTCGTC | -| DI_ADT3 | AATGATACGGCGACCACCGAGATCTACACGATGGCGAACACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAAGCTGCGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCGCAGCTTC | GATGGCGAAC | GTTCGCCATC | -| DI_ADT4 | AATGATACGGCGACCACCGAGATCTACACCGAACGATGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGGCGACTAGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CTAGTCGCCT | CGAACGATGG | CCATCGTTCG | -| DI_ADT5 | AATGATACGGCGACCACCGAGATCTACACGATGGAACCGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGCAATGAGCGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GCTCATTGCC | GATGGAACCG | CGGTTCCATC | -| DI_ADT6 | AATGATACGGCGACCACCGAGATCTACACAGACCGGTGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCAGGTAAGCGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGCTTACCTG | AGACCGGTGA | TCACCGGTCT | -| DI_ADT7 | AATGATACGGCGACCACCGAGATCTACACGAGGAAGCCTACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGTAACGCGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCGCGTTACC | GAGGAAGCCT | AGGCTTCCTC | -| DI_ADT8 | AATGATACGGCGACCACCGAGATCTACACCGACGGATGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAACTGGAGCGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGCTCCAGTT | CGACGGATGA | TCATCCGTCG | -| DI_ADT9 | AATGATACGGCGACCACCGAGATCTACACCAGGCAGTAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGGAACTAGGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CCTAGTTCCG | CAGGCAGTAG | CTACTGCCTG | -| DI_ADT10 | AATGATACGGCGACCACCGAGATCTACACGGCAGTCAGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCAGGTAGCAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TGCTACCTGC | GGCAGTCAGA | TCTGACTGCC | -| DI_ADT11 | AATGATACGGCGACCACCGAGATCTACACCGAGGACGATACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGAGCAGAGTGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | ACTCTGCTCG | CGAGGACGAT | ATCGTCCTCG | -| DI_ADT12 | AATGATACGGCGACCACCGAGATCTACACGAGCCGTAGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCGAGGATCAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TGATCCTCGC | GAGCCGTAGA | TCTACGGCTC | -| DI_ADT13 | AATGATACGGCGACCACCGAGATCTACACCAGAGATCGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGAGACCGTGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CACGGTCTCT | CAGAGATCGG | CCGATCTCTG | -| DI_ADT14 | AATGATACGGCGACCACCGAGATCTACACCTCAGAGGAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAGCGGTAACGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GTTACCGCTC | CTCAGAGGAG | CTCCTCTGAG | -| DI_ADT15 | AATGATACGGCGACCACCGAGATCTACACCAGTGAGGACACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGATAGCAGGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CCTGCTATCG | CAGTGAGGAC | GTCCTCACTG | -| DI_ADT16 | AATGATACGGCGACCACCGAGATCTACACGGAAGACCGTACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAGAGCGTACGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GTACGCTCTC | GGAAGACCGT | ACGGTCTTCC | -| DI_ADT17 | AATGATACGGCGACCACCGAGATCTACACAAGCCGGTAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGAGGACTGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CAGTCCTCGT | AAGCCGGTAG | CTACCGGCTT | -| DI_ADT18 | AATGATACGGCGACCACCGAGATCTACACGGACGATAGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTGAGCAGGACGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GTCCTGCTCA | GGACGATAGC | GCTATCGTCC | -| DI_ADT19 | AATGATACGGCGACCACCGAGATCTACACATGGCGCAAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGGCGTAGAGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | TCTACGCCGT | ATGGCGCAAG | CTTGCGCCAT | -| DI_ADT20 | AATGATACGGCGACCACCGAGATCTACACGAGATCCGGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTGAAGACGCGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGCGTCTTCA | GAGATCCGGA | TCCGGATCTC | -| DI_ADT21 | AATGATACGGCGACCACCGAGATCTACACAGCCAGTGAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCATGGAAGCGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GCTTCCATGC | AGCCAGTGAG | CTCACTGGCT | -| DI_ADT22 | AATGATACGGCGACCACCGAGATCTACACGATGACACGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCTGGACAGAGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CTCTGTCCAG | GATGACACGG | CCGTGTCATC | -| DI_ADT23 | AATGATACGGCGACCACCGAGATCTACACAGTAGAGGCCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATTAAGGAGCGCGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | GCGCTCCTTA | AGTAGAGGCC | GGCCTCTACT | -| DI_ADT24 | AATGATACGGCGACCACCGAGATCTACACGCTGAACAGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATCGGAGTAACGGTGACTGGAGTTCCTTGGCACCCGAGAATTC*C*A | CGTTACTCCG | GCTGAACAGG | CCTGTTCAGC | diff --git a/data/test/DI_HTO.md b/data/test/DI_HTO.md deleted file mode 100644 index 94e4962..0000000 --- a/data/test/DI_HTO.md +++ /dev/null @@ -1,14 +0,0 @@ -| Name | Full Sequence i5 | Full Sequence i7 | Index1 | Index2 (Forward Strand Workflow) | Index2 (Reverse Complement Workflow) | -|----------|-------------------------------------------------------------------|-------------------------------------------------------------------|------------|-------------------------------|---------------------------------------| -| DI_HTO1 | AATGATACGGCGACCACCGAGATCTACACCGAAGGTCAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGCGTGAAGCGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | GCTTCACGCT | CGAAGGTCAG | CTGACCTTCG | -| DI_HTO2 | AATGATACGGCGACCACCGAGATCTACACGAGTAACGGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGAGACCTGAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTCAGGTCTC | GAGTAACGGC | GCCGTTACTC | -| DI_HTO3 | AATGATACGGCGACCACCGAGATCTACACTGCAAGGACGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGTCGCAGAGAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TCTCTGCGAC | TGCAAGGACG | CGTCCTTGCA | -| DI_HTO4 | AATGATACGGCGACCACCGAGATCTACACAATGGACGGCACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAAGCGTCGAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTCGACGCTT | AATGGACGGC | GCCGTCCATT | -| DI_HTO5 | AATGATACGGCGACCACCGAGATCTACACGGCGATACAGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGAGGACCTAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TAGGTCCTCC | GGCGATACAG | CTGTATCGCC | -| DI_HTO6 | AATGATACGGCGACCACCGAGATCTACACCAGAGCTGGAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGACGTGAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTCACGTCGT | CAGAGCTGGA | TCCAGCTCTG | -| DI_HTO7 | AATGATACGGCGACCACCGAGATCTACACAGGTGGCCAAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGCGAGACTAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TAGTCTCGCC | AGGTGGCCAA | TTGGCCACCT | -| DI_HTO8 | AATGATACGGCGACCACCGAGATCTACACGAACCAGTGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATACGCGAGGATGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | ATCCTCGCGT | GAACCAGTGG | CCACTGGTTC | -| DI_HTO9 | AATGATACGGCGACCACCGAGATCTACACCGAGGTGACAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGCGGCGATAAGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | TTATCGCCGC | CGAGGTGACA | TGTCACCTCG | -| DI_HTO10 | AATGATACGGCGACCACCGAGATCTACACGCGAAACGGTACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAGACGAGCTGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CAGCTCGTCT | GCGAAACGGT | ACCGTTTCGC | -| DI_HTO11 | AATGATACGGCGACCACCGAGATCTACACGGCTGCGAAAACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATGGCAAGCTAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | CTAGCTTGCC | GGCTGCGAAA | TTTCGCAGCC | -| DI_HTO12 | AATGATACGGCGACCACCGAGATCTACACAAGCAGCTGGACACTCTTTCCCTACACGACGC*T*C | CAAGCAGAAGACGGCATACGAGATAAGTGCGAGCGTGACTGGAGTTCAGACGTGTGCTCTTCCGAT*C*T | GCTCGCACTT | AAGCAGCTGG | CCAGCTGCTT |