diff --git a/changes/4141.bugfix.md b/changes/4141.bugfix.md
new file mode 100644
index 0000000000..6a132da3f5
--- /dev/null
+++ b/changes/4141.bugfix.md
@@ -0,0 +1 @@
+Fix silent byte-order corruption for structured dtypes with the `bytes` codec: multi-byte fields are now byte-swapped to the codec's configured `endian` on write and decoded honoring it on read, so non-native-endian structured data (e.g. big-endian fields, as produced by virtual references to external data) round-trips correctly.
diff --git a/pyproject.toml b/pyproject.toml
index 663a1ea286..1cb521812c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -94,18 +94,18 @@ homepage = "https://github.com/zarr-developers/zarr-python"
 # pins deliberately, e.g. via dependabot or `uv lock --upgrade`.
 [dependency-groups]
 test = [
-    "coverage==7.15.2",
+    "coverage==7.15.3",
     "pytest==9.1.1",
     "pytest-asyncio==1.4.0",
     "pytest-cov==7.1.0",
     "pytest-accept==0.3.0",
     "numpydoc==1.10.0",
-    "hypothesis==6.160.0",
+    "hypothesis==6.165.0",
     "pytest-xdist==3.8.0",
     "pytest-benchmark==5.2.3",
     "pytest-codspeed==5.0.3",
     "tomlkit==0.15.1",
-    "uv==0.11.31",
+    "uv==0.12.1",
 ]
 remote-tests = [
     {include-group = "test"},
@@ -129,7 +129,7 @@ docs = [
     "mkdocs-redirects==1.2.3",
     "markdown-exec[ansi]==1.12.3",
     "griffe-inherited-docstrings==1.1.3",
-    "ruff==0.16.0",
+    "ruff==0.16.1",
     # Changelog generation
     {include-group = "release"},
     # Optional dependencies to run examples
diff --git a/uv.lock b/uv.lock
index e1d469fd84..372b788e41 100644
--- a/uv.lock
+++ b/uv.lock
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 [[package]]
@@ -3562,10 +3566,10 @@ provides-extras = ["cast-value-rs", "cli", "gpu", "optional", "remote"]
 dev = [
     { name = "astroid", specifier = "==4.1.2" },
     { name = "botocore" },
-    { name = "coverage", specifier = "==7.15.2" },
+    { name = "coverage", specifier = "==7.15.3" },
     { name = "fsspec", specifier = ">=2023.10.0" },
     { name = "griffe-inherited-docstrings", specifier = "==1.1.3" },
-    { name = "hypothesis", specifier = "==6.160.0" },
+    { name = "hypothesis", specifier = "==6.165.0" },
     { name = "markdown-exec", extras = ["ansi"], specifier = "==1.12.3" },
     { name = "mike", specifier = "==2.2.0" },
     { name = "mkdocs", specifier = "==1.6.1" },
@@ -3586,12 +3590,12 @@ dev = [
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     { name = "pytest-xdist", specifier = "==3.8.0" },
     { name = "requests", specifier = "==2.34.2" },
-    { name = "ruff", specifier = "==0.16.0" },
+    { name = "ruff", specifier = "==0.16.1" },
     { name = "s3fs", specifier = ">=2023.10.0" },
     { name = "tomlkit", specifier = "==0.15.1" },
     { name = "towncrier", specifier = "==25.8.0" },
     { name = "universal-pathlib" },
-    { name = "uv", specifier = "==0.11.31" },
+    { name = "uv", specifier = "==0.12.1" },
 ]
 docs = [
     { name = "astroid", specifier = "==4.1.2" },
@@ -3605,16 +3609,16 @@ docs = [
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     { name = "numcodecs", extras = ["msgpack"] },
     { name = "pytest", specifier = "==9.1.1" },
-    { name = "ruff", specifier = "==0.16.0" },
+    { name = "ruff", specifier = "==0.16.1" },
     { name = "s3fs", specifier = ">=2023.10.0" },
     { name = "towncrier", specifier = "==25.8.0" },
 ]
 release = [{ name = "towncrier", specifier = "==25.8.0" }]
 remote-tests = [
     { name = "botocore" },
-    { name = "coverage", specifier = "==7.15.2" },
+    { name = "coverage", specifier = "==7.15.3" },
     { name = "fsspec", specifier = ">=2023.10.0" },
-    { name = "hypothesis", specifier = "==6.160.0" },
+    { name = "hypothesis", specifier = "==6.165.0" },
     { name = "moto", extras = ["s3", "server"], specifier = "==5.2.2" },
     { name = "numpydoc", specifier = "==1.10.0" },
     { name = "obstore", specifier = ">=0.5.1" },
@@ -3628,11 +3632,11 @@ remote-tests = [
     { name = "requests", specifier = "==2.34.2" },
     { name = "s3fs", specifier = ">=2023.10.0" },
     { name = "tomlkit", specifier = "==0.15.1" },
-    { name = "uv", specifier = "==0.11.31" },
+    { name = "uv", specifier = "==0.12.1" },
 ]
 test = [
-    { name = "coverage", specifier = "==7.15.2" },
-    { name = "hypothesis", specifier = "==6.160.0" },
+    { name = "coverage", specifier = "==7.15.3" },
+    { name = "hypothesis", specifier = "==6.165.0" },
     { name = "numpydoc", specifier = "==1.10.0" },
     { name = "pytest", specifier = "==9.1.1" },
     { name = "pytest-accept", specifier = "==0.3.0" },
@@ -3642,5 +3646,5 @@ test = [
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     { name = "pytest-xdist", specifier = "==3.8.0" },
     { name = "tomlkit", specifier = "==0.15.1" },
-    { name = "uv", specifier = "==0.11.31" },
+    { name = "uv", specifier = "==0.12.1" },
 ]