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singleCellPersonal.md

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#Running singleCell With Sensei Instructions (Personal Computer)

  1. Sensei must be properly built on your computer

  2. Go to Bloodflow/rbc and use the following commands: cp * /path/to/lammps/src

  3. Make a build directory while in BloodFlow/examples/singleCell: mkdir build

  4. There are pathes in Bloodflow/sites/personal.cmake that need to udated. *Maybe we can get this to be relative paths

  5. While in the newly created build directory, run the following command (install directory is created when building Sensei): cmake -DSENSEI_DIR=/path/to/install/lib/cmake/ -C /path/to/BloodFlow/sites/personal.cmake ../
    Next run: make -j8

  6. Return to BloodFlow/examples/singleCell and run: mpirun -n 1 cellFlow in.lmp4cell