diff --git a/.github/codecov.yml b/.github/codecov.yml
index 7737aa6a..a6017cd9 100644
--- a/.github/codecov.yml
+++ b/.github/codecov.yml
@@ -8,6 +8,7 @@ coverage:
       default:
         target: auto
         threshold: 1%
+        after_n_builds: 3
         if_not_found: success
       docling-core:
         target: auto
@@ -37,8 +38,21 @@ coverage:
         target: auto
         threshold: 1%
         paths:
-          - "docling/testing/docling-version-tests/src/main/java/**"
+          - "docling-testing/docling-version-tests/src/main/java/**"
         if_not_found: success
+flags:
+  java17:
+    paths:
+      - "!**/test/**"
+    carryforward: true
+  java21:
+    paths:
+      - "!**/test/**"
+    carryforward: true
+  java25:
+    paths:
+      - "!**/test/**"
+    carryforward: true
 comment:
   layout: "header,diff,flags,tree,footer"
   behavior: default
@@ -49,5 +63,3 @@ ignore:
   - "**/test/**"
   - "docs/**"
   - "buildSrc/**"
-  - "docling-testcontainers/**"
-  - "docling-testing/**"
diff --git a/docs/src/doc/docs/whats-new.md b/docs/src/doc/docs/whats-new.md
index 693768ca..b440bbe2 100644
--- a/docs/src/doc/docs/whats-new.md
+++ b/docs/src/doc/docs/whats-new.md
@@ -7,6 +7,7 @@ Docling Java {{ gradle.project_version }} includes important breaking changes, a
 ### {{ gradle.project_version }}
 
 * **New `docling-bom` module** — A Maven BOM (`ai.docling:docling-bom`) is now published, allowing consumers to align all Docling Java module versions with a single import.
+* **Codecov configuration fixes** — Fixed module path mappings, ignore rules, and added per-Java-version coverage flags for accurate coverage reporting across all modules.
 
 ### 0.5.1