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<h2 id="toc-title">Table of contents</h2>
<ul>
<li><a href="#load-downloaded-dataset" id="toc-load-downloaded-dataset" class="nav-link active" data-scroll-target="#load-downloaded-dataset"><span class="header-section-number">31.1</span> Load downloaded dataset</a></li>
<li><a href="#recoding" id="toc-recoding" class="nav-link" data-scroll-target="#recoding"><span class="header-section-number">31.2</span> Recoding</a>
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<li><a href="#id" id="toc-id" class="nav-link" data-scroll-target="#id"><span class="header-section-number">31.2.1</span> ID</a></li>
<li><a href="#demographic" id="toc-demographic" class="nav-link" data-scroll-target="#demographic"><span class="header-section-number">31.2.2</span> Demographic</a></li>
<li><a href="#bmi" id="toc-bmi" class="nav-link" data-scroll-target="#bmi"><span class="header-section-number">31.2.3</span> BMI</a></li>
<li><a href="#diabetes" id="toc-diabetes" class="nav-link" data-scroll-target="#diabetes"><span class="header-section-number">31.2.4</span> Diabetes</a></li>
<li><a href="#family-history-of-diabetes" id="toc-family-history-of-diabetes" class="nav-link" data-scroll-target="#family-history-of-diabetes"><span class="header-section-number">31.2.5</span> Family history of diabetes</a></li>
<li><a href="#smoking" id="toc-smoking" class="nav-link" data-scroll-target="#smoking"><span class="header-section-number">31.2.6</span> Smoking</a></li>
<li><a href="#diet" id="toc-diet" class="nav-link" data-scroll-target="#diet"><span class="header-section-number">31.2.7</span> Diet</a></li>
<li><a href="#vigorous-physical-activity" id="toc-vigorous-physical-activity" class="nav-link" data-scroll-target="#vigorous-physical-activity"><span class="header-section-number">31.2.8</span> Vigorous physical activity</a></li>
<li><a href="#access-to-medical-services" id="toc-access-to-medical-services" class="nav-link" data-scroll-target="#access-to-medical-services"><span class="header-section-number">31.2.9</span> Access to medical services</a></li>
<li><a href="#hypertensionhigh-blood-pressure" id="toc-hypertensionhigh-blood-pressure" class="nav-link" data-scroll-target="#hypertensionhigh-blood-pressure"><span class="header-section-number">31.2.10</span> Hypertension/high blood pressure</a></li>
<li><a href="#sleep-daily-in-hours" id="toc-sleep-daily-in-hours" class="nav-link" data-scroll-target="#sleep-daily-in-hours"><span class="header-section-number">31.2.11</span> Sleep (daily in hours)</a></li>
<li><a href="#laboratory-data" id="toc-laboratory-data" class="nav-link" data-scroll-target="#laboratory-data"><span class="header-section-number">31.2.12</span> Laboratory data</a></li>
<li><a href="#survey-features" id="toc-survey-features" class="nav-link" data-scroll-target="#survey-features"><span class="header-section-number">31.2.13</span> Survey features</a></li>
<li><a href="#survey-year" id="toc-survey-year" class="nav-link" data-scroll-target="#survey-year"><span class="header-section-number">31.2.14</span> Survey year</a></li>
<li><a href="#icd-10-cm-codes" id="toc-icd-10-cm-codes" class="nav-link" data-scroll-target="#icd-10-cm-codes"><span class="header-section-number">31.2.15</span> ICD-10-CM codes</a></li>
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<li><a href="#analytic-data" id="toc-analytic-data" class="nav-link" data-scroll-target="#analytic-data"><span class="header-section-number">31.3</span> Analytic data</a>
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<li><a href="#full-dataset" id="toc-full-dataset" class="nav-link" data-scroll-target="#full-dataset"><span class="header-section-number">31.3.1</span> Full dataset</a></li>
<li><a href="#analytic-datset---adults-20-years-of-more" id="toc-analytic-datset---adults-20-years-of-more" class="nav-link" data-scroll-target="#analytic-datset---adults-20-years-of-more"><span class="header-section-number">31.3.2</span> Analytic datset - adults 20 years of more</a></li>
<li><a href="#save-dataset-for-later-use" id="toc-save-dataset-for-later-use" class="nav-link" data-scroll-target="#save-dataset-for-later-use"><span class="header-section-number">31.3.3</span> Save dataset for later use</a></li>
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<h1 class="title"><span class="chapter-number">31</span> <span class="chapter-title">Recoding cycle 8</span></h1>
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<p>Creating analytic dataset from 2013-14 cycle</p>
<section id="load-downloaded-dataset" class="level2" data-number="31.1">
<h2 data-number="31.1" class="anchored" data-anchor-id="load-downloaded-dataset"><span class="header-section-number">31.1</span> Load downloaded dataset</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">load</span>(<span class="at">file =</span> <span class="st">"data/analytic13.RData"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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</section>
<section id="recoding" class="level2" data-number="31.2">
<h2 data-number="31.2" class="anchored" data-anchor-id="recoding"><span class="header-section-number">31.2</span> Recoding</h2>
<section id="id" class="level3" data-number="31.2.1">
<h3 data-number="31.2.1" class="anchored" data-anchor-id="id"><span class="header-section-number">31.2.1</span> ID</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a>dat2 <span class="ot"><-</span> nhanes13</span>
<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>id <span class="ot"><-</span> dat2<span class="sc">$</span>SEQN</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="demographic" class="level3" data-number="31.2.2">
<h3 data-number="31.2.2" class="anchored" data-anchor-id="demographic"><span class="header-section-number">31.2.2</span> Demographic</h3>
<section id="age" class="level4" data-number="31.2.2.1">
<h4 data-number="31.2.2.1" class="anchored" data-anchor-id="age"><span class="header-section-number">31.2.2.1</span> Age</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>age <span class="ot"><-</span> dat2<span class="sc">$</span>RIDAGEYR</span>
<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>age.cat <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>age, <span class="st">" 0:19 = '<20'; 20:49 = '20-49'; 50:64 = '50-64'; </span></span>
<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a><span class="st"> 65:80 = '65+'; else = NA "</span>)</span>
<span id="cb3-4"><a href="#cb3-4" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>age.cat <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>age.cat, <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"<20"</span>, <span class="st">"20-49"</span>, <span class="st">"50-64"</span>, <span class="st">"65+"</span>))</span>
<span id="cb3-5"><a href="#cb3-5" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>age.cat, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb3-6"><a href="#cb3-6" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb3-7"><a href="#cb3-7" aria-hidden="true" tabindex="-1"></a><span class="co">#> <20 20-49 50-64 65+ <NA> </span></span>
<span id="cb3-8"><a href="#cb3-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> 4406 2989 1474 1306 0</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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</section>
<section id="sex" class="level4" data-number="31.2.2.2">
<h4 data-number="31.2.2.2" class="anchored" data-anchor-id="sex"><span class="header-section-number">31.2.2.2</span> Sex</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb4"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>sex <span class="ot"><-</span> dat2<span class="sc">$</span>RIAGENDR</span>
<span id="cb4-2"><a href="#cb4-2" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>sex, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb4-3"><a href="#cb4-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb4-4"><a href="#cb4-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> Male Female <NA> </span></span>
<span id="cb4-5"><a href="#cb4-5" aria-hidden="true" tabindex="-1"></a><span class="co">#> 5003 5172 0</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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</section>
<section id="education" class="level4" data-number="31.2.2.3">
<h4 data-number="31.2.2.3" class="anchored" data-anchor-id="education"><span class="header-section-number">31.2.2.3</span> Education</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>education <span class="ot"><-</span> dat2<span class="sc">$</span>DMDEDUC2</span>
<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>education <span class="ot"><-</span> <span class="fu">as.factor</span>(dat2<span class="sc">$</span>education)</span>
<span id="cb5-3"><a href="#cb5-3" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>education <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>education, <span class="at">recodes =</span> <span class="st">" c('College graduate or above') = </span></span>
<span id="cb5-4"><a href="#cb5-4" aria-hidden="true" tabindex="-1"></a><span class="st">'College graduate or above'; c('Some college or AA degree', 'High school graduate/GED or equi') = </span></span>
<span id="cb5-5"><a href="#cb5-5" aria-hidden="true" tabindex="-1"></a><span class="st">'High school'; c('Less than 9th grade', '9-11th grade (Includes 12th grad') = </span></span>
<span id="cb5-6"><a href="#cb5-6" aria-hidden="true" tabindex="-1"></a><span class="st">'Less than high school'; else = NA "</span>)</span>
<span id="cb5-7"><a href="#cb5-7" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>education <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>education, </span>
<span id="cb5-8"><a href="#cb5-8" aria-hidden="true" tabindex="-1"></a> <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"Less than high school"</span>, <span class="st">"High school"</span>, </span>
<span id="cb5-9"><a href="#cb5-9" aria-hidden="true" tabindex="-1"></a> <span class="st">"College graduate or above"</span>))</span>
<span id="cb5-10"><a href="#cb5-10" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>education, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb5-11"><a href="#cb5-11" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb5-12"><a href="#cb5-12" aria-hidden="true" tabindex="-1"></a><span class="co">#> Less than high school High school College graduate or above </span></span>
<span id="cb5-13"><a href="#cb5-13" aria-hidden="true" tabindex="-1"></a><span class="co">#> 455 1770 1443 </span></span>
<span id="cb5-14"><a href="#cb5-14" aria-hidden="true" tabindex="-1"></a><span class="co">#> <NA> </span></span>
<span id="cb5-15"><a href="#cb5-15" aria-hidden="true" tabindex="-1"></a><span class="co">#> 6507</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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</section>
<section id="raceethnicity" class="level4" data-number="31.2.2.4">
<h4 data-number="31.2.2.4" class="anchored" data-anchor-id="raceethnicity"><span class="header-section-number">31.2.2.4</span> Race/ethnicity</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb6"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb6-1"><a href="#cb6-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>race <span class="ot"><-</span> dat2<span class="sc">$</span>RIDRETH1</span>
<span id="cb6-2"><a href="#cb6-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>race <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>race, <span class="at">recodes =</span> <span class="st">" 'Non-Hispanic White'='White';</span></span>
<span id="cb6-3"><a href="#cb6-3" aria-hidden="true" tabindex="-1"></a><span class="st"> 'Non-Hispanic Black'='Black'; c('Mexican American',</span></span>
<span id="cb6-4"><a href="#cb6-4" aria-hidden="true" tabindex="-1"></a><span class="st"> 'Other Hispanic')= 'Hispanic'; else='Others' "</span>)</span>
<span id="cb6-5"><a href="#cb6-5" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>race <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>race, <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"White"</span>, <span class="st">"Black"</span>, <span class="st">"Hispanic"</span>, <span class="st">"Others"</span>))</span>
<span id="cb6-6"><a href="#cb6-6" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>race, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb6-7"><a href="#cb6-7" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb6-8"><a href="#cb6-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> White Black Hispanic Others <NA> </span></span>
<span id="cb6-9"><a href="#cb6-9" aria-hidden="true" tabindex="-1"></a><span class="co">#> 3674 2267 2690 1544 0</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="marital-status" class="level4" data-number="31.2.2.5">
<h4 data-number="31.2.2.5" class="anchored" data-anchor-id="marital-status"><span class="header-section-number">31.2.2.5</span> Marital status</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb7"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>marital <span class="ot"><-</span> dat2<span class="sc">$</span>DMDMARTL</span>
<span id="cb7-2"><a href="#cb7-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>marital <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>marital, <span class="at">recodes =</span> <span class="st">" 'Never married'='Never married';</span></span>
<span id="cb7-3"><a href="#cb7-3" aria-hidden="true" tabindex="-1"></a><span class="st">c('Married', 'Living with partner') = 'Married/with partner'; </span></span>
<span id="cb7-4"><a href="#cb7-4" aria-hidden="true" tabindex="-1"></a><span class="st"> c('Widowed', 'Divorced', 'Separated')='Other'; else=NA "</span>)</span>
<span id="cb7-5"><a href="#cb7-5" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>marital <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>marital, <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"Never married"</span>, <span class="st">"Married/with partner"</span>,</span>
<span id="cb7-6"><a href="#cb7-6" aria-hidden="true" tabindex="-1"></a> <span class="st">"Other"</span>))</span>
<span id="cb7-7"><a href="#cb7-7" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>marital, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb7-8"><a href="#cb7-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb7-9"><a href="#cb7-9" aria-hidden="true" tabindex="-1"></a><span class="co">#> Never married Married/with partner Other </span></span>
<span id="cb7-10"><a href="#cb7-10" aria-hidden="true" tabindex="-1"></a><span class="co">#> 1112 3382 1272 </span></span>
<span id="cb7-11"><a href="#cb7-11" aria-hidden="true" tabindex="-1"></a><span class="co">#> <NA> </span></span>
<span id="cb7-12"><a href="#cb7-12" aria-hidden="true" tabindex="-1"></a><span class="co">#> 4409</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="income" class="level4" data-number="31.2.2.6">
<h4 data-number="31.2.2.6" class="anchored" data-anchor-id="income"><span class="header-section-number">31.2.2.6</span> Income</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb8"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb8-1"><a href="#cb8-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>income <span class="ot"><-</span> dat2<span class="sc">$</span>INDHHIN2</span>
<span id="cb8-2"><a href="#cb8-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>income <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>income, <span class="at">recodes =</span> <span class="st">" c('$ 0 to $ 4,999', '$ 5,000 to $ 9,999',</span></span>
<span id="cb8-3"><a href="#cb8-3" aria-hidden="true" tabindex="-1"></a><span class="st">'$10,000 to $14,999', '$15,000 to $19,999', 'Under $20,000')='less than $20,000';</span></span>
<span id="cb8-4"><a href="#cb8-4" aria-hidden="true" tabindex="-1"></a><span class="st"> c('Over $20,000','$20,000 and Over', '$20,000 to $24,999', </span></span>
<span id="cb8-5"><a href="#cb8-5" aria-hidden="true" tabindex="-1"></a><span class="st"> '$25,000 to $34,999', '$35,000 to $44,999', '$45,000 to $54,999', </span></span>
<span id="cb8-6"><a href="#cb8-6" aria-hidden="true" tabindex="-1"></a><span class="st"> '$55,000 to $64,999', '$65,000 to $74,999')='$20,000 to $74,999';</span></span>
<span id="cb8-7"><a href="#cb8-7" aria-hidden="true" tabindex="-1"></a><span class="st"> c('$75,000 to $99,999','$100,000 and Over')='$75,000 and Over'; </span></span>
<span id="cb8-8"><a href="#cb8-8" aria-hidden="true" tabindex="-1"></a><span class="st"> else=NA "</span>)</span>
<span id="cb8-9"><a href="#cb8-9" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>income <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>income , <span class="at">levels=</span><span class="fu">c</span>(<span class="st">"less than $20,000"</span>, <span class="st">"$20,000 to $74,999"</span>, </span>
<span id="cb8-10"><a href="#cb8-10" aria-hidden="true" tabindex="-1"></a> <span class="st">"$75,000 and Over"</span>))</span>
<span id="cb8-11"><a href="#cb8-11" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>income, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb8-12"><a href="#cb8-12" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb8-13"><a href="#cb8-13" aria-hidden="true" tabindex="-1"></a><span class="co">#> less than $20,000 $20,000 to $74,999 $75,000 and Over <NA> </span></span>
<span id="cb8-14"><a href="#cb8-14" aria-hidden="true" tabindex="-1"></a><span class="co">#> 2110 4964 2641 460</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="where-born-citizenship" class="level4" data-number="31.2.2.7">
<h4 data-number="31.2.2.7" class="anchored" data-anchor-id="where-born-citizenship"><span class="header-section-number">31.2.2.7</span> Where born / citizenship</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb9"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>born <span class="ot"><-</span> dat2<span class="sc">$</span>DMDBORN4</span>
<span id="cb9-2"><a href="#cb9-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>born <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>born, <span class="at">recodes =</span> <span class="st">" 'Others'='Other place';</span></span>
<span id="cb9-3"><a href="#cb9-3" aria-hidden="true" tabindex="-1"></a><span class="st"> 'Born in 50 US states or Washington, DC'= 'Born in US'; else=NA"</span>)</span>
<span id="cb9-4"><a href="#cb9-4" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>born <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>born, <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"Born in US"</span>, <span class="st">"Other place"</span>))</span>
<span id="cb9-5"><a href="#cb9-5" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>born, <span class="at">useNA =</span> <span class="st">"always"</span>) </span>
<span id="cb9-6"><a href="#cb9-6" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb9-7"><a href="#cb9-7" aria-hidden="true" tabindex="-1"></a><span class="co">#> Born in US Other place <NA> </span></span>
<span id="cb9-8"><a href="#cb9-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> 8262 1908 5</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="pregnancy" class="level4" data-number="31.2.2.8">
<h4 data-number="31.2.2.8" class="anchored" data-anchor-id="pregnancy"><span class="header-section-number">31.2.2.8</span> Pregnancy</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb10"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb10-1"><a href="#cb10-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>pregnancy <span class="ot"><-</span> dat2<span class="sc">$</span>RIDEXPRG</span>
<span id="cb10-2"><a href="#cb10-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>pregnancy <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>pregnancy, </span>
<span id="cb10-3"><a href="#cb10-3" aria-hidden="true" tabindex="-1"></a> <span class="at">recodes =</span> <span class="st">" 'Yes, positive lab pregnancy test' = 'Yes';</span></span>
<span id="cb10-4"><a href="#cb10-4" aria-hidden="true" tabindex="-1"></a><span class="st"> 'The participant was not pregnant' = 'No'; </span></span>
<span id="cb10-5"><a href="#cb10-5" aria-hidden="true" tabindex="-1"></a><span class="st"> 'Cannot ascertain if the particip' = 'inconclusive';</span></span>
<span id="cb10-6"><a href="#cb10-6" aria-hidden="true" tabindex="-1"></a><span class="st"> else= 'outside of target population' "</span>)</span>
<span id="cb10-7"><a href="#cb10-7" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>pregnancy, <span class="at">useNA =</span> <span class="st">"always"</span>) </span>
<span id="cb10-8"><a href="#cb10-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb10-9"><a href="#cb10-9" aria-hidden="true" tabindex="-1"></a><span class="co">#> outside of target population <NA> </span></span>
<span id="cb10-10"><a href="#cb10-10" aria-hidden="true" tabindex="-1"></a><span class="co">#> 10175 0</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
</section>
<section id="bmi" class="level3" data-number="31.2.3">
<h3 data-number="31.2.3" class="anchored" data-anchor-id="bmi"><span class="header-section-number">31.2.3</span> BMI</h3>
<section id="bmi-and-obesity" class="level4" data-number="31.2.3.1">
<h4 data-number="31.2.3.1" class="anchored" data-anchor-id="bmi-and-obesity"><span class="header-section-number">31.2.3.1</span> BMI and Obesity</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb11"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>bmi <span class="ot"><-</span> dat2<span class="sc">$</span>BMXBMI</span>
<span id="cb11-2"><a href="#cb11-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>bmi)</span>
<span id="cb11-3"><a href="#cb11-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb11-4"><a href="#cb11-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 12.10 19.70 24.70 25.68 30.20 82.90 1120</span></span>
<span id="cb11-5"><a href="#cb11-5" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>obese <span class="ot"><-</span> <span class="fu">ifelse</span>(dat2<span class="sc">$</span>BMXBMI <span class="sc">>=</span> <span class="dv">30</span>, <span class="st">"Yes"</span>, <span class="st">"No"</span>)</span>
<span id="cb11-6"><a href="#cb11-6" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>obese <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>obese, <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"No"</span>, <span class="st">"Yes"</span>))</span>
<span id="cb11-7"><a href="#cb11-7" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>obese, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb11-8"><a href="#cb11-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb11-9"><a href="#cb11-9" aria-hidden="true" tabindex="-1"></a><span class="co">#> No Yes <NA> </span></span>
<span id="cb11-10"><a href="#cb11-10" aria-hidden="true" tabindex="-1"></a><span class="co">#> 6708 2347 1120</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
</section>
<section id="diabetes" class="level3" data-number="31.2.4">
<h3 data-number="31.2.4" class="anchored" data-anchor-id="diabetes"><span class="header-section-number">31.2.4</span> Diabetes</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb12"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb12-1"><a href="#cb12-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diabetes <span class="ot"><-</span> dat2<span class="sc">$</span>DIQ010</span>
<span id="cb12-2"><a href="#cb12-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diabetes <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>diabetes, <span class="st">" 'Yes'='Yes'; c('No','Borderline')='No';</span></span>
<span id="cb12-3"><a href="#cb12-3" aria-hidden="true" tabindex="-1"></a><span class="st"> else=NA "</span>)</span>
<span id="cb12-4"><a href="#cb12-4" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb12-5"><a href="#cb12-5" aria-hidden="true" tabindex="-1"></a><span class="co"># Taking insulin now or diabetic pills to lower blood sugar - they have diabetes</span></span>
<span id="cb12-6"><a href="#cb12-6" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diabetes[dat2<span class="sc">$</span>DIQ050 <span class="sc">==</span> <span class="st">"Yes"</span>] <span class="ot"><-</span> <span class="st">"Yes"</span></span>
<span id="cb12-7"><a href="#cb12-7" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diabetes[dat2<span class="sc">$</span>DIQ070 <span class="sc">==</span> <span class="st">"Yes"</span>] <span class="ot"><-</span> <span class="st">"Yes"</span></span>
<span id="cb12-8"><a href="#cb12-8" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>diabetes, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb12-9"><a href="#cb12-9" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb12-10"><a href="#cb12-10" aria-hidden="true" tabindex="-1"></a><span class="co">#> No Yes <NA> </span></span>
<span id="cb12-11"><a href="#cb12-11" aria-hidden="true" tabindex="-1"></a><span class="co">#> 8981 782 412</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="family-history-of-diabetes" class="level3" data-number="31.2.5">
<h3 data-number="31.2.5" class="anchored" data-anchor-id="family-history-of-diabetes"><span class="header-section-number">31.2.5</span> Family history of diabetes</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb13"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diabetes.family.history <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>DIQ175A, <span class="st">" 'Family history' = 'Yes'; </span></span>
<span id="cb13-2"><a href="#cb13-2" aria-hidden="true" tabindex="-1"></a><span class="st"> else = 'No' "</span>)</span>
<span id="cb13-3"><a href="#cb13-3" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diabetes.family.history <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>diabetes.family.history, <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"No"</span>, <span class="st">"Yes"</span>))</span>
<span id="cb13-4"><a href="#cb13-4" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diabetes.family.history[dat2<span class="sc">$</span>DIQ175A<span class="sc">==</span><span class="st">"Don't know"</span>] <span class="ot"><-</span> <span class="cn">NA</span></span>
<span id="cb13-5"><a href="#cb13-5" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>diabetes.family.history, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb13-6"><a href="#cb13-6" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb13-7"><a href="#cb13-7" aria-hidden="true" tabindex="-1"></a><span class="co">#> No Yes <NA> </span></span>
<span id="cb13-8"><a href="#cb13-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> 8837 1337 1</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="smoking" class="level3" data-number="31.2.6">
<h3 data-number="31.2.6" class="anchored" data-anchor-id="smoking"><span class="header-section-number">31.2.6</span> Smoking</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb14"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb14-1"><a href="#cb14-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>smoking <span class="ot"><-</span> dat2<span class="sc">$</span>SMQ020</span>
<span id="cb14-2"><a href="#cb14-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>smoking <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>smoking, <span class="st">" 'Yes' = 'Current smoker'; 'No' = 'Never smoker'; else=NA "</span>)</span>
<span id="cb14-3"><a href="#cb14-3" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>smoking <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>smoking, <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"Never smoker"</span>, <span class="st">"Previous smoker"</span>, <span class="st">"Current smoker"</span>))</span>
<span id="cb14-4"><a href="#cb14-4" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>smoking[dat2<span class="sc">$</span>SMQ040 <span class="sc">==</span> <span class="st">"Not at all"</span>] <span class="ot"><-</span> <span class="st">"Previous smoker"</span></span>
<span id="cb14-5"><a href="#cb14-5" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>smoking, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb14-6"><a href="#cb14-6" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb14-7"><a href="#cb14-7" aria-hidden="true" tabindex="-1"></a><span class="co">#> Never smoker Previous smoker Current smoker <NA> </span></span>
<span id="cb14-8"><a href="#cb14-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> 3532 1347 1232 4064</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="diet" class="level3" data-number="31.2.7">
<h3 data-number="31.2.7" class="anchored" data-anchor-id="diet"><span class="header-section-number">31.2.7</span> Diet</h3>
<section id="how-healthy-is-the-diet" class="level4" data-number="31.2.7.1">
<h4 data-number="31.2.7.1" class="anchored" data-anchor-id="how-healthy-is-the-diet"><span class="header-section-number">31.2.7.1</span> How healthy is the diet</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb15"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb15-1"><a href="#cb15-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diet.healthy <span class="ot"><-</span> dat2<span class="sc">$</span>DBQ700</span>
<span id="cb15-2"><a href="#cb15-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diet.healthy <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>diet.healthy, <span class="at">recodes =</span> <span class="st">" c('Excellent', 'Very good')=</span></span>
<span id="cb15-3"><a href="#cb15-3" aria-hidden="true" tabindex="-1"></a><span class="st"> 'Very good or excellent'; 'Good'='Good'; c('Fair', 'Poor')=</span></span>
<span id="cb15-4"><a href="#cb15-4" aria-hidden="true" tabindex="-1"></a><span class="st"> 'Poor or fair'; else = NA "</span>)</span>
<span id="cb15-5"><a href="#cb15-5" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diet.healthy <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>diet.healthy, <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"Poor or fair"</span>, <span class="st">"Good"</span>, </span>
<span id="cb15-6"><a href="#cb15-6" aria-hidden="true" tabindex="-1"></a> <span class="st">"Very good or excellent"</span>))</span>
<span id="cb15-7"><a href="#cb15-7" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>diet.healthy, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb15-8"><a href="#cb15-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb15-9"><a href="#cb15-9" aria-hidden="true" tabindex="-1"></a><span class="co">#> Poor or fair Good Very good or excellent </span></span>
<span id="cb15-10"><a href="#cb15-10" aria-hidden="true" tabindex="-1"></a><span class="co">#> 1824 2743 1896 </span></span>
<span id="cb15-11"><a href="#cb15-11" aria-hidden="true" tabindex="-1"></a><span class="co">#> <NA> </span></span>
<span id="cb15-12"><a href="#cb15-12" aria-hidden="true" tabindex="-1"></a><span class="co">#> 3712</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
</section>
<section id="vigorous-physical-activity" class="level3" data-number="31.2.8">
<h3 data-number="31.2.8" class="anchored" data-anchor-id="vigorous-physical-activity"><span class="header-section-number">31.2.8</span> Vigorous physical activity</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb16"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb16-1"><a href="#cb16-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>physical.activity <span class="ot"><-</span> dat2<span class="sc">$</span>PAQ605</span>
<span id="cb16-2"><a href="#cb16-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>physical.activity <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>physical.activity, <span class="at">recodes =</span> <span class="st">" 'No' = 'No'; </span></span>
<span id="cb16-3"><a href="#cb16-3" aria-hidden="true" tabindex="-1"></a><span class="st"> 'Yes' = 'Yes'; else=NA"</span>)</span>
<span id="cb16-4"><a href="#cb16-4" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>physical.activity <span class="ot"><-</span> <span class="fu">factor</span>(dat2<span class="sc">$</span>physical.activity, <span class="at">levels =</span> <span class="fu">c</span>(<span class="st">"No"</span>, <span class="st">"Yes"</span>))</span>
<span id="cb16-5"><a href="#cb16-5" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>physical.activity, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb16-6"><a href="#cb16-6" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb16-7"><a href="#cb16-7" aria-hidden="true" tabindex="-1"></a><span class="co">#> No Yes <NA> </span></span>
<span id="cb16-8"><a href="#cb16-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> 5975 1172 3028</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="access-to-medical-services" class="level3" data-number="31.2.9">
<h3 data-number="31.2.9" class="anchored" data-anchor-id="access-to-medical-services"><span class="header-section-number">31.2.9</span> Access to medical services</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb17"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb17-1"><a href="#cb17-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>medical.access <span class="ot"><-</span> dat2<span class="sc">$</span>HUQ030</span>
<span id="cb17-2"><a href="#cb17-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>medical.access <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>medical.access, <span class="at">recodes =</span> <span class="st">" c('Yes',</span></span>
<span id="cb17-3"><a href="#cb17-3" aria-hidden="true" tabindex="-1"></a><span class="st"> 'There is more than one place')='Yes'; 'There is no place'=</span></span>
<span id="cb17-4"><a href="#cb17-4" aria-hidden="true" tabindex="-1"></a><span class="st"> 'No'; else=NA"</span>)</span>
<span id="cb17-5"><a href="#cb17-5" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>medical.access, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb17-6"><a href="#cb17-6" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb17-7"><a href="#cb17-7" aria-hidden="true" tabindex="-1"></a><span class="co">#> No Yes <NA> </span></span>
<span id="cb17-8"><a href="#cb17-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> 1194 8981 0</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="hypertensionhigh-blood-pressure" class="level3" data-number="31.2.10">
<h3 data-number="31.2.10" class="anchored" data-anchor-id="hypertensionhigh-blood-pressure"><span class="header-section-number">31.2.10</span> Hypertension/high blood pressure</h3>
<section id="systolic-bp" class="level4" data-number="31.2.10.1">
<h4 data-number="31.2.10.1" class="anchored" data-anchor-id="systolic-bp"><span class="header-section-number">31.2.10.1</span> Systolic BP</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb18"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb18-1"><a href="#cb18-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>systolic1 <span class="ot"><-</span> dat2<span class="sc">$</span>BPXSY1</span>
<span id="cb18-2"><a href="#cb18-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>systolic2 <span class="ot"><-</span> dat2<span class="sc">$</span>BPXSY2</span>
<span id="cb18-3"><a href="#cb18-3" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>systolic3 <span class="ot"><-</span> dat2<span class="sc">$</span>BPXSY3</span>
<span id="cb18-4"><a href="#cb18-4" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>systolic4 <span class="ot"><-</span> dat2<span class="sc">$</span>BPXSY4</span>
<span id="cb18-5"><a href="#cb18-5" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb18-6"><a href="#cb18-6" aria-hidden="true" tabindex="-1"></a>dat2 <span class="ot"><-</span> dat2 <span class="sc">%>%</span> </span>
<span id="cb18-7"><a href="#cb18-7" aria-hidden="true" tabindex="-1"></a> <span class="fu">mutate</span>(<span class="at">systolicBP =</span> <span class="fu">rowMeans</span>(dat2[, <span class="fu">c</span>(<span class="st">"systolic1"</span>, <span class="st">"systolic2"</span>, </span>
<span id="cb18-8"><a href="#cb18-8" aria-hidden="true" tabindex="-1"></a> <span class="st">"systolic3"</span>, <span class="st">"systolic4"</span>)], </span>
<span id="cb18-9"><a href="#cb18-9" aria-hidden="true" tabindex="-1"></a> <span class="at">na.rm =</span> <span class="cn">TRUE</span>))</span>
<span id="cb18-10"><a href="#cb18-10" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>systolicBP)</span>
<span id="cb18-11"><a href="#cb18-11" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb18-12"><a href="#cb18-12" aria-hidden="true" tabindex="-1"></a><span class="co">#> 64.67 106.00 115.33 118.31 128.00 228.67 2644</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="diastolic-bp" class="level4" data-number="31.2.10.2">
<h4 data-number="31.2.10.2" class="anchored" data-anchor-id="diastolic-bp"><span class="header-section-number">31.2.10.2</span> Diastolic BP</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb19"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb19-1"><a href="#cb19-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diastolic1 <span class="ot"><-</span> dat2<span class="sc">$</span>BPXDI1</span>
<span id="cb19-2"><a href="#cb19-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diastolic2 <span class="ot"><-</span> dat2<span class="sc">$</span>BPXDI2</span>
<span id="cb19-3"><a href="#cb19-3" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diastolic3 <span class="ot"><-</span> dat2<span class="sc">$</span>BPXDI3</span>
<span id="cb19-4"><a href="#cb19-4" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diastolic4 <span class="ot"><-</span> dat2<span class="sc">$</span>BPXDI4</span>
<span id="cb19-5"><a href="#cb19-5" aria-hidden="true" tabindex="-1"></a>datX <span class="ot"><-</span> dat2[, <span class="fu">c</span>(<span class="st">"diastolic1"</span>, <span class="st">"diastolic2"</span>, </span>
<span id="cb19-6"><a href="#cb19-6" aria-hidden="true" tabindex="-1"></a> <span class="st">"diastolic3"</span>, <span class="st">"diastolic4"</span>)]</span>
<span id="cb19-7"><a href="#cb19-7" aria-hidden="true" tabindex="-1"></a>datX[datX <span class="sc">==</span><span class="dv">0</span>] <span class="ot"><-</span> <span class="cn">NA</span></span>
<span id="cb19-8"><a href="#cb19-8" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>diastolicBP <span class="ot"><-</span> <span class="fu">rowMeans</span>(datX[, <span class="fu">c</span>(<span class="st">"diastolic1"</span>, <span class="st">"diastolic2"</span>, </span>
<span id="cb19-9"><a href="#cb19-9" aria-hidden="true" tabindex="-1"></a> <span class="st">"diastolic3"</span>, <span class="st">"diastolic4"</span>)], </span>
<span id="cb19-10"><a href="#cb19-10" aria-hidden="true" tabindex="-1"></a> <span class="at">na.rm =</span> <span class="cn">TRUE</span>)</span>
<span id="cb19-11"><a href="#cb19-11" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>diastolicBP)</span>
<span id="cb19-12"><a href="#cb19-12" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb19-13"><a href="#cb19-13" aria-hidden="true" tabindex="-1"></a><span class="co">#> 3.333 58.000 66.667 66.329 74.667 128.000 2688</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
</section>
<section id="sleep-daily-in-hours" class="level3" data-number="31.2.11">
<h3 data-number="31.2.11" class="anchored" data-anchor-id="sleep-daily-in-hours"><span class="header-section-number">31.2.11</span> Sleep (daily in hours)</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb20"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb20-1"><a href="#cb20-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>sleep <span class="ot"><-</span> dat2<span class="sc">$</span>SLD010H</span>
<span id="cb20-2"><a href="#cb20-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>sleep[dat2<span class="sc">$</span>sleep <span class="sc">==</span> <span class="dv">99</span>] <span class="ot"><-</span> <span class="cn">NA</span></span>
<span id="cb20-3"><a href="#cb20-3" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>sleep)</span>
<span id="cb20-4"><a href="#cb20-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb20-5"><a href="#cb20-5" aria-hidden="true" tabindex="-1"></a><span class="co">#> 2.000 6.000 7.000 6.951 8.000 12.000 3721</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="laboratory-data" class="level3" data-number="31.2.12">
<h3 data-number="31.2.12" class="anchored" data-anchor-id="laboratory-data"><span class="header-section-number">31.2.12</span> Laboratory data</h3>
<section id="uric-acid-mgdl" class="level4" data-number="31.2.12.1">
<h4 data-number="31.2.12.1" class="anchored" data-anchor-id="uric-acid-mgdl"><span class="header-section-number">31.2.12.1</span> Uric acid (mg/dL)</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb21"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb21-1"><a href="#cb21-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>uric.acid <span class="ot"><-</span> dat2<span class="sc">$</span>LBXSUA</span>
<span id="cb21-2"><a href="#cb21-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>uric.acid)</span>
<span id="cb21-3"><a href="#cb21-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb21-4"><a href="#cb21-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 0.70 4.30 5.20 5.35 6.20 13.30 3624</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="total-protein-gdl" class="level4" data-number="31.2.12.2">
<h4 data-number="31.2.12.2" class="anchored" data-anchor-id="total-protein-gdl"><span class="header-section-number">31.2.12.2</span> Total protein (g/dL)</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb22"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb22-1"><a href="#cb22-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>protein.total <span class="ot"><-</span> dat2<span class="sc">$</span>LBXSTP</span>
<span id="cb22-2"><a href="#cb22-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>protein.total)</span>
<span id="cb22-3"><a href="#cb22-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb22-4"><a href="#cb22-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 4.700 6.800 7.100 7.108 7.400 10.200 3631</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="total-bilirubin-mgdl" class="level4" data-number="31.2.12.3">
<h4 data-number="31.2.12.3" class="anchored" data-anchor-id="total-bilirubin-mgdl"><span class="header-section-number">31.2.12.3</span> Total bilirubin (mg/dL)</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb23"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb23-1"><a href="#cb23-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>bilirubin.total <span class="ot"><-</span> dat2<span class="sc">$</span>LBXSTB</span>
<span id="cb23-2"><a href="#cb23-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>bilirubin.total)</span>
<span id="cb23-3"><a href="#cb23-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb23-4"><a href="#cb23-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 0.100 0.400 0.600 0.639 0.800 7.100 3626</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="phosphorus-mgdl" class="level4" data-number="31.2.12.4">
<h4 data-number="31.2.12.4" class="anchored" data-anchor-id="phosphorus-mgdl"><span class="header-section-number">31.2.12.4</span> Phosphorus (mg/dL)</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb24"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb24-1"><a href="#cb24-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>phosphorus <span class="ot"><-</span> dat2<span class="sc">$</span>LBXSPH</span>
<span id="cb24-2"><a href="#cb24-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>phosphorus)</span>
<span id="cb24-3"><a href="#cb24-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb24-4"><a href="#cb24-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 1.800 3.500 3.900 3.929 4.300 10.900 3623</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="sodium-mmoll" class="level4" data-number="31.2.12.5">
<h4 data-number="31.2.12.5" class="anchored" data-anchor-id="sodium-mmoll"><span class="header-section-number">31.2.12.5</span> Sodium (mmol/L)</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb25"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb25-1"><a href="#cb25-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>sodium <span class="ot"><-</span> dat2<span class="sc">$</span>LBXSNASI</span>
<span id="cb25-2"><a href="#cb25-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>sodium)</span>
<span id="cb25-3"><a href="#cb25-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb25-4"><a href="#cb25-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 119.0 139.0 140.0 139.8 141.0 154.0 3622</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="potassium-mmoll" class="level4" data-number="31.2.12.6">
<h4 data-number="31.2.12.6" class="anchored" data-anchor-id="potassium-mmoll"><span class="header-section-number">31.2.12.6</span> Potassium (mmol/L)</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb26"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb26-1"><a href="#cb26-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>potassium <span class="ot"><-</span> dat2<span class="sc">$</span>LBXSKSI</span>
<span id="cb26-2"><a href="#cb26-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>potassium)</span>
<span id="cb26-3"><a href="#cb26-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb26-4"><a href="#cb26-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 2.800 3.800 4.000 4.027 4.200 5.800 3623</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="globulin-gdl" class="level4" data-number="31.2.12.7">
<h4 data-number="31.2.12.7" class="anchored" data-anchor-id="globulin-gdl"><span class="header-section-number">31.2.12.7</span> Globulin (g/dL)</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb27"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb27-1"><a href="#cb27-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>globulin <span class="ot"><-</span> dat2<span class="sc">$</span>LBXSGB</span>
<span id="cb27-2"><a href="#cb27-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>globulin)</span>
<span id="cb27-3"><a href="#cb27-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb27-4"><a href="#cb27-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 1.400 2.500 2.800 2.826 3.100 6.500 3631</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="total-calcium-mgdl" class="level4" data-number="31.2.12.8">
<h4 data-number="31.2.12.8" class="anchored" data-anchor-id="total-calcium-mgdl"><span class="header-section-number">31.2.12.8</span> Total calcium (mg/dL)</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb28"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb28-1"><a href="#cb28-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>calcium.total <span class="ot"><-</span> dat2<span class="sc">$</span>LBXSCA</span>
<span id="cb28-2"><a href="#cb28-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>calcium.total)</span>
<span id="cb28-3"><a href="#cb28-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. NA's </span></span>
<span id="cb28-4"><a href="#cb28-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 7.600 9.200 9.500 9.486 9.700 14.800 3664</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="high-cholesterol" class="level4" data-number="31.2.12.9">
<h4 data-number="31.2.12.9" class="anchored" data-anchor-id="high-cholesterol"><span class="header-section-number">31.2.12.9</span> High cholesterol</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb29"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb29-1"><a href="#cb29-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>high.cholesterol <span class="ot"><-</span> dat2<span class="sc">$</span>BPQ080</span>
<span id="cb29-2"><a href="#cb29-2" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>high.cholesterol <span class="ot"><-</span> car<span class="sc">::</span><span class="fu">recode</span>(dat2<span class="sc">$</span>high.cholesterol, <span class="at">recodes =</span> <span class="st">" 'Yes'='Yes';</span></span>
<span id="cb29-3"><a href="#cb29-3" aria-hidden="true" tabindex="-1"></a><span class="st"> 'No'='No'; else = NA"</span>)</span>
<span id="cb29-4"><a href="#cb29-4" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>high.cholesterol, <span class="at">useNA =</span> <span class="st">"always"</span>)</span>
<span id="cb29-5"><a href="#cb29-5" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb29-6"><a href="#cb29-6" aria-hidden="true" tabindex="-1"></a><span class="co">#> No Yes <NA> </span></span>
<span id="cb29-7"><a href="#cb29-7" aria-hidden="true" tabindex="-1"></a><span class="co">#> 4391 2037 3747</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
</section>
<section id="survey-features" class="level3" data-number="31.2.13">
<h3 data-number="31.2.13" class="anchored" data-anchor-id="survey-features"><span class="header-section-number">31.2.13</span> Survey features</h3>
<section id="weight" class="level4" data-number="31.2.13.1">
<h4 data-number="31.2.13.1" class="anchored" data-anchor-id="weight"><span class="header-section-number">31.2.13.1</span> Weight</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb30"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb30-1"><a href="#cb30-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>survey.weight <span class="ot"><-</span> dat2<span class="sc">$</span>WTINT2YR</span>
<span id="cb30-2"><a href="#cb30-2" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>survey.weight)</span>
<span id="cb30-3"><a href="#cb30-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. </span></span>
<span id="cb30-4"><a href="#cb30-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 3698 12754 20233 30585 36280 167885</span></span>
<span id="cb30-5"><a href="#cb30-5" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>survey.weight.mec <span class="ot"><-</span> dat2<span class="sc">$</span>WTMEC2YR</span>
<span id="cb30-6"><a href="#cb30-6" aria-hidden="true" tabindex="-1"></a><span class="fu">summary</span>(dat2<span class="sc">$</span>survey.weight.mec)</span>
<span id="cb30-7"><a href="#cb30-7" aria-hidden="true" tabindex="-1"></a><span class="co">#> Min. 1st Qu. Median Mean 3rd Qu. Max. </span></span>
<span id="cb30-8"><a href="#cb30-8" aria-hidden="true" tabindex="-1"></a><span class="co">#> 0 12562 20175 30585 36748 171395</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="psu" class="level4" data-number="31.2.13.2">
<h4 data-number="31.2.13.2" class="anchored" data-anchor-id="psu"><span class="header-section-number">31.2.13.2</span> PSU</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb31"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb31-1"><a href="#cb31-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>psu <span class="ot"><-</span> <span class="fu">as.factor</span>(dat2<span class="sc">$</span>SDMVPSU)</span>
<span id="cb31-2"><a href="#cb31-2" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>psu)</span>
<span id="cb31-3"><a href="#cb31-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb31-4"><a href="#cb31-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 1 2 </span></span>
<span id="cb31-5"><a href="#cb31-5" aria-hidden="true" tabindex="-1"></a><span class="co">#> 5249 4926</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="strata" class="level4" data-number="31.2.13.3">
<h4 data-number="31.2.13.3" class="anchored" data-anchor-id="strata"><span class="header-section-number">31.2.13.3</span> Strata</h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb32"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb32-1"><a href="#cb32-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>strata <span class="ot"><-</span> <span class="fu">as.factor</span>(dat2<span class="sc">$</span>SDMVSTRA)</span>
<span id="cb32-2"><a href="#cb32-2" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>strata)</span>
<span id="cb32-3"><a href="#cb32-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb32-4"><a href="#cb32-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 </span></span>
<span id="cb32-5"><a href="#cb32-5" aria-hidden="true" tabindex="-1"></a><span class="co">#> 674 646 671 732 674 752 664 663 723 665 741 681 700 500 689</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
</section>
<section id="survey-year" class="level3" data-number="31.2.14">
<h3 data-number="31.2.14" class="anchored" data-anchor-id="survey-year"><span class="header-section-number">31.2.14</span> Survey year</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb33"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb33-1"><a href="#cb33-1" aria-hidden="true" tabindex="-1"></a>dat2<span class="sc">$</span>year <span class="ot"><-</span> dat2<span class="sc">$</span>SDDSRVYR</span>
<span id="cb33-2"><a href="#cb33-2" aria-hidden="true" tabindex="-1"></a><span class="fu">table</span>(dat2<span class="sc">$</span>year, <span class="at">useNA =</span> <span class="st">"always"</span>) </span>
<span id="cb33-3"><a href="#cb33-3" aria-hidden="true" tabindex="-1"></a><span class="co">#> </span></span>
<span id="cb33-4"><a href="#cb33-4" aria-hidden="true" tabindex="-1"></a><span class="co">#> NHANES 2013-2014 public release <NA> </span></span>
<span id="cb33-5"><a href="#cb33-5" aria-hidden="true" tabindex="-1"></a><span class="co">#> 10175 0</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="icd-10-cm-codes" class="level3" data-number="31.2.15">
<h3 data-number="31.2.15" class="anchored" data-anchor-id="icd-10-cm-codes"><span class="header-section-number">31.2.15</span> ICD-10-CM codes</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb34"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb34-1"><a href="#cb34-1" aria-hidden="true" tabindex="-1"></a><span class="fu">colnames</span>(rxq12) <span class="ot"><-</span> <span class="fu">c</span>(<span class="st">"id"</span>, <span class="st">"icd10"</span>)</span>
<span id="cb34-2"><a href="#cb34-2" aria-hidden="true" tabindex="-1"></a><span class="fu">colnames</span>(rxq22) <span class="ot"><-</span> <span class="fu">c</span>(<span class="st">"id"</span>, <span class="st">"icd10"</span>)</span>
<span id="cb34-3"><a href="#cb34-3" aria-hidden="true" tabindex="-1"></a><span class="fu">colnames</span>(rxq32) <span class="ot"><-</span> <span class="fu">c</span>(<span class="st">"id"</span>, <span class="st">"icd10"</span>)</span>
<span id="cb34-4"><a href="#cb34-4" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb34-5"><a href="#cb34-5" aria-hidden="true" tabindex="-1"></a>rx2013 <span class="ot"><-</span> <span class="fu">rbind</span>(rxq12, rxq22, rxq32)</span>
<span id="cb34-6"><a href="#cb34-6" aria-hidden="true" tabindex="-1"></a>rx2013 <span class="ot"><-</span> rx2013[<span class="fu">order</span>(rx2013<span class="sc">$</span>id),]</span>
<span id="cb34-7"><a href="#cb34-7" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb34-8"><a href="#cb34-8" aria-hidden="true" tabindex="-1"></a>rx2013<span class="sc">$</span>icd10[rx2013<span class="sc">$</span>icd10 <span class="sc">==</span> <span class="st">"Unknown"</span>] <span class="ot"><-</span> <span class="cn">NA</span></span>
<span id="cb34-9"><a href="#cb34-9" aria-hidden="true" tabindex="-1"></a>rx2013<span class="sc">$</span>icd10[rx2013<span class="sc">$</span>icd10 <span class="sc">==</span> <span class="st">"Refused"</span>] <span class="ot"><-</span> <span class="cn">NA</span></span>
<span id="cb34-10"><a href="#cb34-10" aria-hidden="true" tabindex="-1"></a>rx2013<span class="sc">$</span>icd10[rx2013<span class="sc">$</span>icd10 <span class="sc">==</span> <span class="st">"Don't know"</span>] <span class="ot"><-</span> <span class="cn">NA</span></span>
<span id="cb34-11"><a href="#cb34-11" aria-hidden="true" tabindex="-1"></a>rx2013<span class="sc">$</span>icd10[rx2013<span class="sc">$</span>icd10 <span class="sc">==</span> <span class="st">""</span>] <span class="ot"><-</span> <span class="cn">NA</span></span>
<span id="cb34-12"><a href="#cb34-12" aria-hidden="true" tabindex="-1"></a>rx2013<span class="sc">$</span>icd10.new <span class="ot"><-</span> <span class="fu">substr</span>(rx2013<span class="sc">$</span>icd10, <span class="at">start =</span> <span class="dv">1</span>, <span class="at">stop =</span> <span class="dv">3</span>)</span>
<span id="cb34-13"><a href="#cb34-13" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb34-14"><a href="#cb34-14" aria-hidden="true" tabindex="-1"></a>rx2013 <span class="ot"><-</span> <span class="fu">na.omit</span>(rx2013)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
</section>
<section id="analytic-data" class="level2" data-number="31.3">
<h2 data-number="31.3" class="anchored" data-anchor-id="analytic-data"><span class="header-section-number">31.3</span> Analytic data</h2>
<section id="full-dataset" class="level3" data-number="31.3.1">
<h3 data-number="31.3.1" class="anchored" data-anchor-id="full-dataset"><span class="header-section-number">31.3.1</span> Full dataset</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb35"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb35-1"><a href="#cb35-1" aria-hidden="true" tabindex="-1"></a>nhanes13r <span class="ot"><-</span> dat2</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="analytic-datset---adults-20-years-of-more" class="level3" data-number="31.3.2">
<h3 data-number="31.3.2" class="anchored" data-anchor-id="analytic-datset---adults-20-years-of-more"><span class="header-section-number">31.3.2</span> Analytic datset - adults 20 years of more</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb36"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb36-1"><a href="#cb36-1" aria-hidden="true" tabindex="-1"></a>vars <span class="ot"><-</span> <span class="fu">c</span>(</span>
<span id="cb36-2"><a href="#cb36-2" aria-hidden="true" tabindex="-1"></a> <span class="co"># ID</span></span>
<span id="cb36-3"><a href="#cb36-3" aria-hidden="true" tabindex="-1"></a> <span class="st">"id"</span>,</span>
<span id="cb36-4"><a href="#cb36-4" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb36-5"><a href="#cb36-5" aria-hidden="true" tabindex="-1"></a> <span class="co"># Demographic</span></span>
<span id="cb36-6"><a href="#cb36-6" aria-hidden="true" tabindex="-1"></a> <span class="st">"age"</span>, <span class="st">"age.cat"</span>, <span class="st">"sex"</span>, <span class="st">"education"</span>, <span class="st">"race"</span>, </span>
<span id="cb36-7"><a href="#cb36-7" aria-hidden="true" tabindex="-1"></a> <span class="st">"marital"</span>, <span class="st">"income"</span>, <span class="st">"born"</span>, <span class="st">"pregnancy"</span>,</span>
<span id="cb36-8"><a href="#cb36-8" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb36-9"><a href="#cb36-9" aria-hidden="true" tabindex="-1"></a> <span class="co"># obesity</span></span>
<span id="cb36-10"><a href="#cb36-10" aria-hidden="true" tabindex="-1"></a> <span class="st">"obese"</span>, </span>
<span id="cb36-11"><a href="#cb36-11" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb36-12"><a href="#cb36-12" aria-hidden="true" tabindex="-1"></a> <span class="co"># Diabetes</span></span>
<span id="cb36-13"><a href="#cb36-13" aria-hidden="true" tabindex="-1"></a> <span class="st">"diabetes"</span>, <span class="st">"diabetes.family.history"</span>,</span>
<span id="cb36-14"><a href="#cb36-14" aria-hidden="true" tabindex="-1"></a> </span>