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2 changes: 1 addition & 1 deletion .github/workflows/docs.yml
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ jobs:
working-directory: docs
env:
GITHUB_PAGES: true
# NEXT_PUBLIC_BASE_PATH: '__root__'
NEXT_PUBLIC_BASE_PATH: '/mdfactory'
NODE_ENV: production
run: bun run build

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4 changes: 2 additions & 2 deletions docs/content/docs/index.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -6,13 +6,13 @@ description: High-throughput molecular dynamics simulation library
MDFactory is an open source, end-to-end simulation manager for high-throughput molecular dynamics with robust data management. It handles the full pipeline from molecular structure generation through parametrization, system building, simulation, and analysis — with built-in database integration for tracking results at scale.

<img
src="/diagrams/light/architecture/pipeline-overview.png"
src={`${process.env.NEXT_PUBLIC_BASE_PATH || ''}/diagrams/light/architecture/pipeline-overview.png`}
alt="MDFactory pipeline: CSV/YAML input → Structure Generation (RDKit) → Parametrization (OpenFF, CGenFF) → System Build (Mixedbox, Bilayer, LNP) → Simulation (GROMACS, OpenMM) → Analysis, with Database sync to Simulation DB and Analysis DB"
className="block dark:hidden"
style={{ width: '100%', maxWidth: '900px', margin: '1.5rem auto' }}
/>
<img
src="/diagrams/dark/architecture/pipeline-overview.png"
src={`${process.env.NEXT_PUBLIC_BASE_PATH || ''}/diagrams/dark/architecture/pipeline-overview.png`}
alt="MDFactory pipeline: CSV/YAML input → Structure Generation (RDKit) → Parametrization (OpenFF, CGenFF) → System Build (Mixedbox, Bilayer, LNP) → Simulation (GROMACS, OpenMM) → Analysis, with Database sync to Simulation DB and Analysis DB"
className="hidden dark:block"
style={{ width: '100%', maxWidth: '900px', margin: '1.5rem auto' }}
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