From fdf71892a6f64256b65a83b05715e6917e6cd74b Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 15 Oct 2025 07:04:43 +0000
Subject: [PATCH 1/2] Initial plan


From 8be6be7f9888c2c78decea11d9f286826f7c9290 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 15 Oct 2025 07:11:23 +0000
Subject: [PATCH 2/2] Add SPARQL query for observatory listing with interactive
 execution

Co-authored-by: cedricdcc <30471340+cedricdcc@users.noreply.github.com>
---
 book/04-data-products/emo-bon-graph.md | 136 +++++++++++++++++++++++++
 1 file changed, 136 insertions(+)

diff --git a/book/04-data-products/emo-bon-graph.md b/book/04-data-products/emo-bon-graph.md
index 02ddb11..fa27470 100644
--- a/book/04-data-products/emo-bon-graph.md
+++ b/book/04-data-products/emo-bon-graph.md
@@ -11,3 +11,139 @@ The sparql endpoint for the EMO-BON Graph is available at:
 
 Some examples of SPARQL queries that can be run against the EMO-BON Graph are:
 
+## Query 1: List of Observatories
+
+This query retrieves the list of observatories with their names, country, location (latitude, longitude, and Marine Regions Geographic Identifier - MRGID), and habitat information.
+
+### SPARQL Query
+
+```sparql
+PREFIX owl: <http://www.w3.org/2002/07/owl#>
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX schema: <https://schema.org/>
+PREFIX sosa: <http://www.w3.org/ns/sosa/>
+PREFIX geo: <http://www.w3.org/2003/01/geo/wgs84_pos#>
+PREFIX marineregions: <http://marineregions.org/mrgid/>
+
+SELECT ?observatory ?name ?country ?lat ?long ?mrgid ?habitat
+WHERE {
+  ?observatory a sosa:Platform ;
+               schema:name ?name .
+  
+  OPTIONAL { ?observatory schema:location/schema:addressCountry ?country . }
+  OPTIONAL { ?observatory geo:lat ?lat . }
+  OPTIONAL { ?observatory geo:long ?long . }
+  OPTIONAL { ?observatory schema:location/schema:identifier ?mrgid . }
+  OPTIONAL { ?observatory schema:additionalProperty/schema:name ?habitat . }
+}
+ORDER BY ?name
+```
+
+### Execute Query
+
+<div id="query1-container">
+  <button onclick="executeQuery1()" style="padding: 10px 20px; background-color: #0366d6; color: white; border: none; border-radius: 4px; cursor: pointer; margin-bottom: 10px;">
+    Execute Query
+  </button>
+  <div id="query1-status" style="margin: 10px 0; font-style: italic; color: #666;"></div>
+  <div id="query1-results" style="margin-top: 10px;"></div>
+</div>
+
+<script>
+async function executeQuery1() {
+  const endpoint = 'https://emobon-kb.vliz.be/repositories/kgap';
+  const query = `
+PREFIX owl: <http://www.w3.org/2002/07/owl#>
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX schema: <https://schema.org/>
+PREFIX sosa: <http://www.w3.org/ns/sosa/>
+PREFIX geo: <http://www.w3.org/2003/01/geo/wgs84_pos#>
+PREFIX marineregions: <http://marineregions.org/mrgid/>
+
+SELECT ?observatory ?name ?country ?lat ?long ?mrgid ?habitat
+WHERE {
+  ?observatory a sosa:Platform ;
+               schema:name ?name .
+  
+  OPTIONAL { ?observatory schema:location/schema:addressCountry ?country . }
+  OPTIONAL { ?observatory geo:lat ?lat . }
+  OPTIONAL { ?observatory geo:long ?long . }
+  OPTIONAL { ?observatory schema:location/schema:identifier ?mrgid . }
+  OPTIONAL { ?observatory schema:additionalProperty/schema:name ?habitat . }
+}
+ORDER BY ?name
+  `;
+  
+  const statusDiv = document.getElementById('query1-status');
+  const resultsDiv = document.getElementById('query1-results');
+  
+  statusDiv.textContent = 'Executing query...';
+  resultsDiv.innerHTML = '';
+  
+  try {
+    const response = await fetch(endpoint, {
+      method: 'POST',
+      headers: {
+        'Accept': 'application/sparql-results+json',
+        'Content-Type': 'application/sparql-query'
+      },
+      body: query
+    });
+    
+    if (!response.ok) {
+      throw new Error(`HTTP error! status: ${response.status}`);
+    }
+    
+    const data = await response.json();
+    console.log('Query 1 Results:', data);
+    
+    statusDiv.textContent = `Query returned ${data.results.bindings.length} results`;
+    
+    if (data.results.bindings.length === 0) {
+      resultsDiv.innerHTML = '<p>No results found.</p>';
+      return;
+    }
+    
+    // Create table
+    let table = '<table style="width: 100%; border-collapse: collapse; margin-top: 10px;">';
+    table += '<thead><tr style="background-color: #f6f8fa;">';
+    table += '<th style="border: 1px solid #ddd; padding: 8px; text-align: left;">Observatory</th>';
+    table += '<th style="border: 1px solid #ddd; padding: 8px; text-align: left;">Name</th>';
+    table += '<th style="border: 1px solid #ddd; padding: 8px; text-align: left;">Country</th>';
+    table += '<th style="border: 1px solid #ddd; padding: 8px; text-align: left;">Latitude</th>';
+    table += '<th style="border: 1px solid #ddd; padding: 8px; text-align: left;">Longitude</th>';
+    table += '<th style="border: 1px solid #ddd; padding: 8px; text-align: left;">MRGID</th>';
+    table += '<th style="border: 1px solid #ddd; padding: 8px; text-align: left;">Habitat</th>';
+    table += '</tr></thead><tbody>';
+    
+    data.results.bindings.forEach(row => {
+      table += '<tr>';
+      table += `<td style="border: 1px solid #ddd; padding: 8px;">${row.observatory?.value || ''}</td>`;
+      table += `<td style="border: 1px solid #ddd; padding: 8px;">${row.name?.value || ''}</td>`;
+      table += `<td style="border: 1px solid #ddd; padding: 8px;">${row.country?.value || ''}</td>`;
+      table += `<td style="border: 1px solid #ddd; padding: 8px;">${row.lat?.value || ''}</td>`;
+      table += `<td style="border: 1px solid #ddd; padding: 8px;">${row.long?.value || ''}</td>`;
+      table += `<td style="border: 1px solid #ddd; padding: 8px;">${row.mrgid?.value || ''}</td>`;
+      table += `<td style="border: 1px solid #ddd; padding: 8px;">${row.habitat?.value || ''}</td>`;
+      table += '</tr>';
+    });
+    
+    table += '</tbody></table>';
+    resultsDiv.innerHTML = table;
+    
+  } catch (error) {
+    console.error('Error executing query:', error);
+    statusDiv.textContent = 'Error executing query';
+    resultsDiv.innerHTML = `<p style="color: red;">Error: ${error.message}</p>
+      <p>This may be due to CORS restrictions or network issues. Try accessing the endpoint directly at: 
+      <a href="https://emobon-kb.vliz.be/repositories/kgap" target="_blank">https://emobon-kb.vliz.be/repositories/kgap</a></p>`;
+  }
+}
+</script>
+
+:::{note}
+The interactive query execution above uses JavaScript to fetch data from the SPARQL endpoint. If you encounter CORS issues, you may need to access the endpoint directly or use a SPARQL client.
+:::
+