Python CI

Fix duplicate CLI shorthand flag registration #1826

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Run time

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Job	Run time
Lint & Type Check	1m 19s
Batch Evaluation Tests	1m 6s
MCP End-to-End Tests	52s
Core Tests (Python 3.11, Shard 2/4)	4m 22s
Core Tests (Python 3.11, Shard 1/4)	2m 18s
Core Tests (Python 3.10, Shard 3/4)	1m 37s
Core Tests (Python 3.10, Shard 1/4)	2m 9s
Core Tests (Python 3.11, Shard 4/4)	1m 57s
Core Tests (Python 3.12, Shard 3/4)	1m 35s
Core Tests (Python 3.12, Shard 4/4)	1m 52s
Core Tests (Python 3.12, Shard 1/4)	2m 11s
Core Tests (Python 3.12, Shard 2/4)	5m 27s
Core Tests (Python 3.10, Shard 4/4)	1m 50s
Core Tests (Python 3.10, Shard 2/4)	4m 22s
Core Tests (Python 3.11, Shard 3/4)	1m 35s
	34m 32s