From 33d4dcc006fc9a5301497c462a0246992f45810a Mon Sep 17 00:00:00 2001
From: Faried Abu Zaid <fariedaz@gmail.com>
Date: Thu, 26 Jun 2025 00:36:02 +0200
Subject: [PATCH 1/4] Update Project Setup

---
 pyproject.toml |  31 ++
 setup.py       |  12 -
 uv.lock        | 877 +++++++++++++++++++++++++++++++++++++++++++++++++
 3 files changed, 908 insertions(+), 12 deletions(-)
 create mode 100644 pyproject.toml
 delete mode 100644 setup.py
 create mode 100644 uv.lock

diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..7731bd8
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,31 @@
+[project]
+name = "autstr"
+version = "0.1"
+description = "Library for working with finitely presentable infinite structures"
+authors = [
+    { name = "Faried Abu Zaid", email = "fariedaz@gmail.com" }
+]
+license = { text = "GPL v3.0" }
+dependencies = [
+    "nltk~=3.7",
+    "automata-lib~=5.0.0",
+    "sphinx-autodoc-typehints~=1.19.2",
+    "ipykernel>=6.29.5",
+    "jupyter (>=1.1.1,<2.0.0)",
+    "visual-automata (>=1.1.1,<2.0.0)",
+]
+requires-python = ">=3.8,<=3.12"
+
+[project.optional-dependencies]
+docs = [
+    "sphinxcontrib-applehelp~=1.0.2",
+    "sphinxcontrib-devhelp~=1.0.2",
+    "sphinxcontrib-htmlhelp~=2.0.0",
+    "sphinxcontrib-jsmath~=1.0.1",
+    "sphinxcontrib-qthelp~=1.0.3",
+    "sphinxcontrib-serializinghtml~=1.1.5"
+]
+
+[tool.uv]
+build-system = "setuptools"
+packages = ["autstr", "autstr.utils"]
diff --git a/setup.py b/setup.py
deleted file mode 100644
index d8ccae7..0000000
--- a/setup.py
+++ /dev/null
@@ -1,12 +0,0 @@
-from setuptools import setup
-
-setup(
-    name='AuStr',
-    version='0.1',
-    packages=['autstr', 'autstr.utils'],
-    url='https://github.com/fariedabuzaid/AuStr/edit/main/README.md',
-    license='GPL v3.0',
-    author='Faried Abu Zaid',
-    author_email='fariedaz@gmail.com',
-    description='Library for working finitely presentable structures'
-)
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 0000000..349e56b
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,877 @@
+version = 1
+revision = 2
+requires-python = ">=3.12"
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From 38206867c31d17c5186a89655f36dd8e0ba512ba Mon Sep 17 00:00:00 2001
From: Faried Abu Zaid <fariedaz@gmail.com>
Date: Thu, 26 Jun 2025 00:36:37 +0200
Subject: [PATCH 2/4] Update Project Setup

---
 requirements.txt |  12 -
 uv.lock          | 877 -----------------------------------------------
 2 files changed, 889 deletions(-)
 delete mode 100644 requirements.txt
 delete mode 100644 uv.lock

diff --git a/requirements.txt b/requirements.txt
deleted file mode 100644
index ca4b8f3..0000000
--- a/requirements.txt
+++ /dev/null
@@ -1,12 +0,0 @@
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-# Doc and testing
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-cloud-sptheme~=1.10.1.post20200504175005
diff --git a/uv.lock b/uv.lock
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index 349e56b..0000000
--- a/uv.lock
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@@ -1,877 +0,0 @@
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From 0eeb9b110410cce0881182b93a4e2dc8e2b7660a Mon Sep 17 00:00:00 2001
From: Faried Abu Zaid <fariedaz@gmail.com>
Date: Thu, 26 Jun 2025 00:36:47 +0200
Subject: [PATCH 3/4] Update Demo

---
 notebooks/demo.ipynb | 2180 ++++++++++++++++++++++++++++++++++++++----
 1 file changed, 1986 insertions(+), 194 deletions(-)

diff --git a/notebooks/demo.ipynb b/notebooks/demo.ipynb
index 2253c47..3457a52 100644
--- a/notebooks/demo.ipynb
+++ b/notebooks/demo.ipynb
@@ -3,45 +3,156 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
-    "from austr.buildin.presentations import buechi_arithmetic\n",
+    "from autstr.buildin.presentations import buechi_arithmetic\n",
     "from visual_automata.fa.dfa import VisualDFA\n",
-    "from austr.utils.automata_tools import iterate_language"
+    "from autstr.utils.automata_tools import iterate_language"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 2,
-   "outputs": [],
-   "source": [
-    "ba = buechi_arithmetic()"
-   ],
    "metadata": {
     "collapsed": false,
+    "jupyter": {
+     "outputs_hidden": false
+    },
     "pycharm": {
      "name": "#%%\n"
     }
-   }
+   },
+   "outputs": [],
+   "source": [
+    "ba = buechi_arithmetic()"
+   ]
   },
   {
    "cell_type": "code",
    "execution_count": 3,
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "A(x,x,x): 3 states\n"
-     ]
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@@ -52,41 +163,133 @@
     "# Define zero\n",
     "ba.update(O='A(x,x,x)')\n",
     "VisualDFA(ba.automata['O']).show_diagram()"
-   ],
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 4,
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+    "jupyter": {
+     "outputs_hidden": false
+    },
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-   }
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 4,
+   },
    "outputs": [
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-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "O(x): 3 states\n",
-      "-O(x): 4 states\n",
-      "O(y): 3 states\n",
-      "O(z): 3 states\n",
-      "(O(y) | O(z)): 5 states\n",
-      "A(y,z,x): 16 states\n",
-      "-A(y,z,x): 46 states\n",
-      "(O(y) | O(z) | -A(y,z,x)): 54 states\n",
-      "-(O(y) | O(z) | -A(y,z,x)): 14 states\n",
-      "all z.(O(y) | O(z) | -A(y,z,x)): 13 states\n",
-      "-all z.(O(y) | O(z) | -A(y,z,x)): 8 states\n",
-      "all y z.(O(y) | O(z) | -A(y,z,x)): 3 states\n",
-      "(-O(x) & all y z.(O(y) | O(z) | -A(y,z,x))): 3 states\n"
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@@ -97,32 +300,467 @@
     "# Define one\n",
     "ba.update(I='not O(x) and forall y z.(O(y) or O(z) or not A(y, z, x))')\n",
     "VisualDFA(ba.automata['I']).show_diagram()"
-   ],
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 5,
    "metadata": {
     "collapsed": false,
+    "jupyter": {
+     "outputs_hidden": false
+    },
     "pycharm": {
      "name": "#%%\n"
     }
-   }
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 5,
+   },
    "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "I(x): 3 states\n",
-      "A(u,x,v): 16 states\n",
-      "(I(x) & A(u,x,v)): 6 states\n",
-      "exists x.(I(x) & A(u,x,v)): 6 states\n"
-     ]
-    },
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@@ -133,29 +771,133 @@
     "# Define successor\n",
     "ba.update(S='exists x.(I(x) and A(u, x, v))')\n",
     "VisualDFA(ba.automata['S']).show_diagram()"
-   ],
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 6,
    "metadata": {
     "collapsed": false,
+    "jupyter": {
+     "outputs_hidden": false
+    },
     "pycharm": {
      "name": "#%%\n"
     }
-   }
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 6,
+   },
    "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "B(x,x): 3 states\n"
-     ]
-    },
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@@ -166,33 +908,675 @@
     "# Define powers of two\n",
     "ba.update(P='B(x,x)')\n",
     "VisualDFA(ba.automata['P']).show_diagram()"
-   ],
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
    "metadata": {
     "collapsed": false,
+    "jupyter": {
+     "outputs_hidden": false
+    },
     "pycharm": {
      "name": "#%%\n"
     }
-   }
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 7,
+   },
    "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "O(z): 3 states\n",
-      "-O(z): 4 states\n",
-      "A(x,z,y): 16 states\n",
-      "(-O(z) & A(x,z,y)): 16 states\n",
-      "exists z.(-O(z) & A(x,z,y)): 9 states\n"
-     ]
-    },
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      "metadata": {},
@@ -203,43 +1587,467 @@
     "# Define linear order\n",
     "ba.update(Smaller='exist z.(not O(z) and A(x, z, y))')\n",
     "VisualDFA(ba.automata['Smaller']).show_diagram()"
-   ],
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 8,
    "metadata": {
     "collapsed": false,
+    "jupyter": {
+     "outputs_hidden": false
+    },
     "pycharm": {
      "name": "#%%\n"
     }
-   }
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 8,
+   },
    "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "P(y): 3 states\n",
-      "Smaller(x0,y): 9 states\n",
-      "(P(y) & Smaller(x0,y)): 6 states\n",
-      "A(x0,x1,x): 16 states\n",
-      "(P(y) & Smaller(x0,y) & A(x0,x1,x)): 20 states\n",
-      "B(x1,y): 6 states\n",
-      "(P(y) & Smaller(x0,y) & A(x0,x1,x) & B(x1,y)): 8 states\n",
-      "Smaller(y,y1): 9 states\n",
-      "B(x1,y1): 6 states\n",
-      "(Smaller(y,y1) & B(x1,y1)): 8 states\n",
-      "exists y1.(Smaller(y,y1) & B(x1,y1)): 8 states\n",
-      "-exists y1.(Smaller(y,y1) & B(x1,y1)): 14 states\n",
-      "(P(y) & Smaller(x0,y) & A(x0,x1,x) & B(x1,y) & -exists y1.(Smaller(y,y1) & B(x1,y1))): 8 states\n",
-      "exists x1.(P(y) & Smaller(x0,y) & A(x0,x1,x) & B(x1,y) & -exists y1.(Smaller(y,y1) & B(x1,y1))): 8 states\n",
-      "exists x0 x1.(P(y) & Smaller(x0,y) & A(x0,x1,x) & B(x1,y) & -exists y1.(Smaller(y,y1) & B(x1,y1))): 6 states\n"
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      "metadata": {},
@@ -252,106 +2060,90 @@
     "    E='exists x0 x1.(P(y) and Smaller(x0, y) and A(x0, x1, x) and B(x1, y) and not exists y1.(Smaller(y, y1) and B(x1, y1)))'\n",
     ")\n",
     "VisualDFA(ba.automata['E']).show_diagram()"
-   ],
-   "metadata": {
-    "collapsed": false,
-    "pycharm": {
-     "name": "#%%\n"
-    }
-   }
+   ]
   },
   {
    "cell_type": "code",
    "execution_count": 9,
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "O(x): 3 states\n",
-      "A(x,x,y): 6 states\n",
-      "A(x,u,v): 16 states\n",
-      "(A(x,x,y) & A(x,u,v)): 17 states\n",
-      "P(v): 3 states\n",
-      "(A(x,x,y) & A(x,u,v) & P(v)): 13 states\n",
-      "A(v,w,y): 16 states\n",
-      "(A(x,x,y) & A(x,u,v) & P(v) & A(v,w,y)): 17 states\n",
-      "exists w.(A(x,x,y) & A(x,u,v) & P(v) & A(v,w,y)): 11 states\n",
-      "exists v w.(A(x,x,y) & A(x,u,v) & P(v) & A(v,w,y)): 11 states\n",
-      "exists u v w.(A(x,x,y) & A(x,u,v) & P(v) & A(v,w,y)): 4 states\n",
-      "exists y u v w.(A(x,x,y) & A(x,u,v) & P(v) & A(v,w,y)): 4 states\n",
-      "(O(x) | exists y u v w.(A(x,x,y) & A(x,u,v) & P(v) & A(v,w,y))): 5 states\n",
-      "-(O(x) | exists y u v w.(A(x,x,y) & A(x,u,v) & P(v) & A(v,w,y))): 1 states\n",
-      "all x.(O(x) | exists y u v w.(A(x,x,y) & A(x,u,v) & P(v) & A(v,w,y))): 1 states\n"
-     ]
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-   "source": [
-    "# Evaluate 'between a number x>0 and its double lies a power of 2'\n",
-    "a = ba.evaluate('forall x.(O(x) or exists y u v w.(A(x, x, y) and A(x, u, v) and P(v) and A(v, w, y)))')\n",
-    "VisualDFA(a).show_diagram()"
-   ],
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+    "jupyter": {
+     "outputs_hidden": false
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-  },
-  {
-   "cell_type": "code",
-   "execution_count": 11,
+   },
    "outputs": [
     {
      "data": {
-      "text/plain": "<functools.KeyWrapper at 0x114f42e90>"
+      "image/svg+xml": [
+       "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\"?>\n",
+       "<!DOCTYPE svg PUBLIC \"-//W3C//DTD SVG 1.1//EN\"\n",
+       " \"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd\">\n",
+       "<!-- Generated by graphviz version 2.42.4 (0)\n",
+       " -->\n",
+       "<!-- Pages: 1 -->\n",
+       "<svg width=\"92pt\" height=\"52pt\"\n",
+       " viewBox=\"0.00 0.00 91.60 52.00\" xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\">\n",
+       "<g id=\"graph0\" class=\"graph\" transform=\"scale(1 1) rotate(0) translate(4 48)\">\n",
+       "<polygon fill=\"white\" stroke=\"transparent\" points=\"-4,4 -4,-48 87.6,-48 87.6,4 -4,4\"/>\n",
+       "<!-- Initial -->\n",
+       "<g id=\"node1\" class=\"node\">\n",
+       "<title>Initial</title>\n",
+       "<ellipse fill=\"black\" stroke=\"black\" cx=\"1.8\" cy=\"-22\" rx=\"1.8\" ry=\"1.8\"/>\n",
+       "</g>\n",
+       "<!-- 0 -->\n",
+       "<g id=\"node2\" class=\"node\">\n",
+       "<title>0</title>\n",
+       "<ellipse fill=\"none\" stroke=\"black\" cx=\"61.6\" cy=\"-22\" rx=\"18\" ry=\"18\"/>\n",
+       "<ellipse fill=\"none\" stroke=\"black\" cx=\"61.6\" cy=\"-22\" rx=\"22\" ry=\"22\"/>\n",
+       "<text text-anchor=\"middle\" x=\"61.6\" y=\"-18.3\" font-family=\"Times,serif\" font-size=\"14.00\">0</text>\n",
+       "</g>\n",
+       "<!-- Initial&#45;&gt;0 -->\n",
+       "<g id=\"edge1\" class=\"edge\">\n",
+       "<title>Initial&#45;&gt;0</title>\n",
+       "<path fill=\"none\" stroke=\"black\" d=\"M3.8,-22C7.23,-22 18.91,-22 30.8,-22\"/>\n",
+       "<polygon fill=\"black\" stroke=\"black\" points=\"30.87,-24.98 39.37,-22 30.87,-19.03 30.87,-24.98\"/>\n",
+       "</g>\n",
+       "</g>\n",
+       "</svg>\n"
+      ],
+      "text/plain": [
+       "<graphviz.graphs.Digraph at 0x7989f73005f0>"
+      ]
      },
-     "execution_count": 11,
+     "execution_count": 9,
      "metadata": {},
      "output_type": "execute_result"
     }
    ],
    "source": [
-    "from functools import cmp_to_key\n",
-    "\n",
-    "list(map(cmp_to_key(lambda x:x[0]), [(0, 'a'), (1, 'b')]))["
-   ],
-   "metadata": {
-    "collapsed": false,
-    "pycharm": {
-     "name": "#%%\n"
-    }
-   }
+    "# Evaluate 'between a number x>0 and its double lies a power of 2'\n",
+    "a = ba.evaluate('forall x.(O(x) or exists y u v w.(A(x, x, y) and A(x, u, v) and P(v) and A(v, w, y)))')\n",
+    "VisualDFA(a).show_diagram()"
+   ]
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
   "language_info": {
    "codemirror_mode": {
     "name": "ipython",
-    "version": 2
+    "version": 3
    },
    "file_extension": ".py",
    "mimetype": "text/x-python",
    "name": "python",
    "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython2",
-   "version": "2.7.6"
+   "pygments_lexer": "ipython3",
+   "version": "3.12.0"
   }
  },
  "nbformat": 4,
- "nbformat_minor": 0
-}
\ No newline at end of file
+ "nbformat_minor": 4
+}

From 457f36c4aebc318f89ff1a25a25a6c81901cbaa3 Mon Sep 17 00:00:00 2001
From: Faried Abu Zaid <fariedaz@gmail.com>
Date: Thu, 26 Jun 2025 04:26:27 +0200
Subject: [PATCH 4/4] Update Pipelines

---
 .github/workflows/run_docs.yaml  | 1 -
 .github/workflows/run_tests.yaml | 1 -
 2 files changed, 2 deletions(-)

diff --git a/.github/workflows/run_docs.yaml b/.github/workflows/run_docs.yaml
index fede9c5..0b8b3c6 100644
--- a/.github/workflows/run_docs.yaml
+++ b/.github/workflows/run_docs.yaml
@@ -18,7 +18,6 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install -r requirements.txt
           pip install -e .
       - name: Install and Build 🔧 # This example project is built using npm and outputs the result to the 'build' folder. Replace with the commands required to build your project, or remove this step entirely if your site is pre-built.
         run: |
diff --git a/.github/workflows/run_tests.yaml b/.github/workflows/run_tests.yaml
index 1dcc31d..b551861 100644
--- a/.github/workflows/run_tests.yaml
+++ b/.github/workflows/run_tests.yaml
@@ -18,7 +18,6 @@
         - name: Install dependencies
           run: |
             python -m pip install --upgrade pip
-            pip install -r requirements.txt
             pip install -e .
         - name: Run tests with pytest
           run: pytest
\ No newline at end of file