01-28 05:00:49.422 DEBUG [system_info.cpp:225] Executable path: "/opt/conda/envs/pingvin/bin/pingvin"
01-28 05:00:49.422 DEBUG [system_info.cpp:231] Default Pingvin home: "/opt/conda/envs/pingvin"
01-28 05:00:49.422 WARNING [initialization.cpp:38] Environment variable 'OMP_WAIT_POLICY' not set to 'PASSIVE'.
01-28 05:00:49.422 WARNING [initialization.cpp:39] Pingvin may experience serious performance issues under heavy load (multiple simultaneous reconstructions, etc.)
01-28 05:00:49.422 INFO [main.cpp:85] Pingvin 0.1.0 [f5419f492449886d938841a57a98d0894e066c16]
01-28 05:00:49.423 INFO [StreamConsumer.h:68] Loading configuration from: /opt/conda/envs/pingvin/share/pingvin/config/Generic_Cartesian_Grappa_SNR.xml
01-28 05:00:49.423 INFO [Loader.h:39] loading gadget_factory_export_ - NoiseAdjustGadget from the dll pingvin_mricore
01-28 05:00:49.429 INFO [Loader.h:39] loading gadget_factory_export_ - AsymmetricEchoAdjustROGadget from the dll pingvin_mricore
01-28 05:00:49.429 INFO [Loader.h:39] loading gadget_factory_export_ - RemoveROOversamplingGadget from the dll pingvin_mricore
01-28 05:00:49.429 INFO [Loader.h:39] loading gadget_factory_export_ - AcquisitionAccumulateTriggerGadget from the dll pingvin_mricore
01-28 05:00:49.429 INFO [Loader.h:39] loading gadget_factory_export_ - BucketToBufferGadget from the dll pingvin_mricore
01-28 05:00:49.429 INFO [Loader.h:39] loading gadget_factory_export_ - GenericReconCartesianReferencePrepGadget from the dll pingvin_mricore
01-28 05:00:49.429 INFO [Loader.h:39] loading gadget_factory_export_ - GenericReconCartesianGrappaGadget from the dll pingvin_mricore
01-28 05:00:49.429 INFO [Loader.h:39] loading gadget_factory_export_ - GenericReconPartialFourierHandlingFilterGadget from the dll pingvin_mricore
01-28 05:00:49.429 INFO [Loader.h:39] loading gadget_factory_export_ - GenericReconKSpaceFilteringGadget from the dll pingvin_mricore
01-28 05:00:49.430 INFO [Loader.h:39] loading gadget_factory_export_ - GenericReconFieldOfViewAdjustmentGadget from the dll pingvin_mricore
01-28 05:00:49.430 INFO [Loader.h:39] loading gadget_factory_export_ - GenericReconNoiseStdMapComputingGadget from the dll pingvin_mricore
01-28 05:00:49.430 INFO [Loader.h:39] loading gadget_factory_export_ - GenericReconImageArrayScalingGadget from the dll pingvin_mricore
01-28 05:00:49.430 INFO [Loader.h:39] loading gadget_factory_export_ - ImageArraySplitGadget from the dll pingvin_mricore
01-28 05:00:49.430 INFO [Loader.h:39] loading gadget_factory_export_ - ComplexToFloatGadget from the dll pingvin_mricore
01-28 05:00:49.430 INFO [Loader.h:39] loading gadget_factory_export_ - FloatToUShortGadget from the dll pingvin_mricore
01-28 05:00:49.430 DEBUG [Stream.cpp:43] Loading Gadget NoiseAdjust (class NoiseAdjustGadget) from pingvin_mricore
01-28 05:00:49.430 DEBUG [Stream.cpp:43] Loading Gadget AsymmetricEcho (class AsymmetricEchoAdjustROGadget) from pingvin_mricore
01-28 05:00:49.430 DEBUG [NoiseAdjustGadget.cpp:190] perform_noise_adjust_ is 1
01-28 05:00:49.430 DEBUG [NoiseAdjustGadget.cpp:191] pass_nonconformant_data_ is 1
01-28 05:00:49.430 DEBUG [NoiseAdjustGadget.cpp:192] receiver_noise_bandwidth_ is 0.793000
01-28 05:00:49.430 DEBUG [AsymmetricEchoAdjustROGadget.cpp:30] max RO for encoding space 0 : 384
01-28 05:00:49.430 DEBUG [Stream.cpp:43] Loading Gadget AccTrig (class AcquisitionAccumulateTriggerGadget) from pingvin_mricore
01-28 05:00:49.430 DEBUG [Stream.cpp:43] Loading Gadget BucketToBuffer (class BucketToBufferGadget) from pingvin_mricore
01-28 05:00:49.430 DEBUG [Stream.cpp:43] Loading Gadget RemoveROOversampling (class RemoveROOversamplingGadget) from pingvin_mricore
01-28 05:00:49.431 DEBUG [Stream.cpp:43] Loading Gadget PrepRef (class GenericReconCartesianReferencePrepGadget) from pingvin_mricore
01-28 05:00:49.431 DEBUG [Stream.cpp:43] Loading Gadget Recon (class GenericReconCartesianGrappaGadget) from pingvin_mricore
01-28 05:00:49.431 DEBUG [GenericReconBase.h:59] Debug folder is not set ...
01-28 05:00:49.431 DEBUG [GenericReconBase.h:59] Debug folder is not set ...
01-28 05:00:49.431 DEBUG [Stream.cpp:43] Loading Gadget PartialFourierHandling (class GenericReconPartialFourierHandlingFilterGadget) from pingvin_mricore
01-28 05:00:49.431 DEBUG [Stream.cpp:43] Loading Gadget KSpaceFilter (class GenericReconKSpaceFilteringGadget) from pingvin_mricore
01-28 05:00:49.431 DEBUG [GenericReconPartialFourierHandlingGadget.cpp:19] Number of encoding spaces: 1
01-28 05:00:49.431 DEBUG [GenericReconBase.h:59] Debug folder is not set ...
01-28 05:00:49.431 DEBUG [ImageArraySendMixin.hpp:138] ---> Encoding space : 0 <---
01-28 05:00:49.431 DEBUG [GenericReconCartesianReferencePrepGadget.cpp:29] Number of encoding spaces: 1
01-28 05:00:49.431 DEBUG [GenericReconCartesianReferencePrepGadget.cpp:40] ---> Encoding space : 0 <---
01-28 05:00:49.431 DEBUG [GenericReconCartesianReferencePrepGadget.cpp:41] Encoding matrix size: 384 192 1
01-28 05:00:49.431 DEBUG [GenericReconKSpaceFilteringGadget.cpp:39] Number of encoding spaces: 1
01-28 05:00:49.431 DEBUG [GenericReconKSpaceFilteringGadget.cpp:59] Encoding space : 0 - encoding FOV : [880 440 8 ]
01-28 05:00:49.431 DEBUG [GenericReconKSpaceFilteringGadget.cpp:60] Encoding space : 0 - recon FOV : [440 440 8 ]
01-28 05:00:49.431 DEBUG [Stream.cpp:43] Loading Gadget StdMap (class GenericReconNoiseStdMapComputingGadget) from pingvin_mricore
01-28 05:00:49.431 DEBUG [GenericReconPartialFourierHandlingGadget.cpp:35] acceFactorE1 is 1
01-28 05:00:49.431 DEBUG [GenericReconPartialFourierHandlingGadget.cpp:36] acceFactorE2 is 1
01-28 05:00:49.431 DEBUG [Stream.cpp:43] Loading Gadget Scaling (class GenericReconImageArrayScalingGadget) from pingvin_mricore
01-28 05:00:49.431 DEBUG [ImageArraySendMixin.hpp:139] Encoding matrix size: 384 192 1
01-28 05:00:49.431 DEBUG [GenericReconBase.h:59] Debug folder is not set ...
01-28 05:00:49.431 DEBUG [GenericReconCartesianReferencePrepGadget.cpp:42] Encoding field_of_view : 880 440 8
01-28 05:00:49.431 DEBUG [GenericReconCartesianReferencePrepGadget.cpp:43] Recon matrix size : 192 192 1
01-28 05:00:49.431 DEBUG [GenericReconCartesianReferencePrepGadget.cpp:44] Recon field_of_view : 440 440 8
01-28 05:00:49.431 DEBUG [GenericReconCartesianReferencePrepGadget.cpp:55] acceFactorE1 is 1
01-28 05:00:49.431 DEBUG [Stream.cpp:43] Loading Gadget FloatToShortAttrib (class FloatToUShortGadget) from pingvin_mricore
01-28 05:00:49.432 DEBUG [Stream.cpp:43] Loading Gadget FOVAdjustment (class GenericReconFieldOfViewAdjustmentGadget) from pingvin_mricore
01-28 05:00:49.432 DEBUG [GenericReconImageArrayScalingGadget.cpp:22] Number of encoding spaces: 1
01-28 05:00:49.432 DEBUG [GenericReconBase.h:59] Debug folder is not set ...
01-28 05:00:49.432 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:35] Number of encoding spaces: 1
01-28 05:00:49.432 DEBUG [RemoveROOversamplingGadget.cpp:28] RemoveROOversamplingGadget:omp_set_num_threads(1) ...
01-28 05:00:49.432 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:61] Encoding space : 0 - encoding FOV : [880 440 8 ]
01-28 05:00:49.432 DEBUG [Stream.cpp:43] Loading Gadget ImageArraySplit (class ImageArraySplitGadget) from pingvin_mricore
01-28 05:00:49.432 DEBUG [Stream.cpp:43] Loading Gadget ComplexToFloatAttrib (class ComplexToFloatGadget) from pingvin_mricore
01-28 05:00:49.432 DEBUG [NoiseAdjustGadget.cpp:200] Input noise covariance matrix is provided as a parameter: ./noisecovariance.bin
01-28 05:00:49.432 DEBUG [GenericReconBase.h:59] Debug folder is not set ...
01-28 05:00:49.432 DEBUG [ImageArraySendMixin.hpp:142] Encoding field_of_view : 880 440 8
01-28 05:00:49.432 DEBUG [ImageArraySendMixin.hpp:145] Recon matrix size : 192 192 1
01-28 05:00:49.432 DEBUG [ImageArraySendMixin.hpp:148] Recon field_of_view : 440 440 8
01-28 05:00:49.432 DEBUG [GenericReconGadget.cpp:32] Number of encoding spaces: 1
01-28 05:00:49.432 DEBUG [GenericReconNoiseStdMapComputingGadget.cpp:24] Number of encoding spaces: 1
01-28 05:00:49.432 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:62] Encoding space : 0 - recon FOV : [440 440 8 ]
01-28 05:00:49.432 DEBUG [GenericReconCartesianReferencePrepGadget.cpp:56] acceFactorE2 is 1
01-28 05:00:49.432 DEBUG [GenericReconNoiseStdMapComputingGadget.cpp:29] GenericReconNoiseStdMapComputingGadget::process(...) starts ...
01-28 05:00:49.432 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:63] Encoding space : 0 - recon size : [192 192 1 ]
01-28 05:00:49.432 DEBUG [GenericReconGadget.cpp:54] acceFactorE1 is 1
01-28 05:00:49.432 DEBUG [GenericReconGadget.cpp:55] acceFactorE2 is 1
01-28 05:00:49.432 DEBUG [GenericReconCartesianGrappaGadget.cpp:30] Number of encoding spaces: 1
01-28 05:00:49.432 WARNING [mri_core_stream.cpp:102] The pre-set buffer names do not include recon_header ...
01-28 05:00:49.432 WARNING [mri_core_stream.cpp:67] GenericReconMrdStreamer, the pre-set buffer names do not include recon_header; the header will not be saved into the buffer ...
01-28 05:00:50.183 DEBUG [AcquisitionAccumulateTriggerGadget.cpp:168] AcquisitionAccumulateTriggerGadget processed 7,680 Acquisitions total
01-28 05:00:50.183 DEBUG [AcquisitionAccumulateTriggerGadget.cpp:125] Trigger 1 occurred, sending out 1 buckets, 0 waveforms ...
01-28 05:00:50.183 DEBUG [BucketToBufferGadget.cpp:192] Data dimensions [RO E1 E2 CHA N S SLC] : [192 192 1 26 40 1 1]
01-28 05:00:50.262 DEBUG [BucketToBufferGadget.cpp:345] Encoding space : 0 - 0 - FOV : [ 880 440 8 ] - Matris size : [ 384 192 1 ]
01-28 05:00:50.262 DEBUG [BucketToBufferGadget.cpp:352] Sampling limits : - RO : [ 0 96 191 ] - E1 : [ 0 96 191 ] - E2 : [ 0 0 0 ]
01-28 05:00:50.262 DEBUG [BucketToBufferGadget.cpp:434] Encoding space : 0 - FOV : [ 880 440 8 ] - Matrix size : [ 384 192 1 ]
01-28 05:00:50.262 DEBUG [BucketToBufferGadget.cpp:441] Sampling limits : - kspace_encoding_step_0 : [ 0 96 191 ] - kspace_encoding_step_1 : [ 0 96 191 ] - kspace_encoding_step_2 : [ 0 0 0 ]
01-28 05:00:50.299 DEBUG [BucketToBufferGadget.cpp:81] End of bucket reached, sending out 1 ReconData buffers
01-28 05:00:50.419 DEBUG [GadgetronTimer.h:73] GenericReconCartesianReferencePrepGadget::process:72.730000 ms
01-28 05:00:50.419 DEBUG [GenericReconCartesianGrappaGadget.cpp:69] Calling 1 , encoding space : 0
01-28 05:00:50.419 DEBUG [GenericReconCartesianGrappaGadget.cpp:71] ======================================================================
01-28 05:00:50.419 WARNING [mri_core_stream.cpp:102] The pre-set buffer names do not include ref_kspace ...
01-28 05:00:50.419 WARNING [mri_core_stream.h:57] Generic reconstruction chain, the pre-set buffer names do not include ref_kspace; the data will not be saved into the buffer ...
01-28 05:00:50.424 DEBUG [GadgetronTimer.h:73] GenericReconCartesianGrappaGadget::make_ref_coil_map:5.255000 ms
01-28 05:00:50.425 DEBUG [GenericReconCartesianGrappaGadget.cpp:353] Downstream coil compression is prescribed to use 26 out of 26 channels ...
01-28 05:00:50.426 DEBUG [GadgetronTimer.h:73] GenericReconCartesianGrappaGadget::prepare_down_stream_coil_compression_ref_data:1.532000 ms
01-28 05:00:50.426 WARNING [mri_core_stream.cpp:102] The pre-set buffer names do not include ref_kspace_for_coil_map ...
01-28 05:00:50.426 WARNING [mri_core_stream.h:57] Generic reconstruction chain, the pre-set buffer names do not include ref_kspace_for_coil_map; the data will not be saved into the buffer ...
01-28 05:00:50.467 DEBUG [GadgetronTimer.h:73] GenericReconCartesianGrappaGadget::perform_coil_map_estimation:41.241000 ms
01-28 05:00:50.469 DEBUG [GadgetronTimer.h:73] GenericReconCartesianGrappaGadget::perform_calib:1.998000 ms
01-28 05:00:50.470 WARNING [mri_core_stream.cpp:102] The pre-set buffer names do not include undersampled_kspace ...
01-28 05:00:50.470 WARNING [mri_core_stream.h:57] Generic reconstruction chain, the pre-set buffer names do not include undersampled_kspace; the data will not be saved into the buffer ...
01-28 05:00:50.627 DEBUG [GenericReconGadget.cpp:659] length for RO : 192 - 1
01-28 05:00:50.627 DEBUG [GenericReconGadget.cpp:663] effective_acce_factor : 1
01-28 05:00:50.627 DEBUG [GenericReconGadget.cpp:670] snr_scaling_ratio : 1
01-28 05:00:50.667 DEBUG [GadgetronTimer.h:73] GenericReconCartesianGrappaGadget::perform_unwrapping:197.262000 ms
01-28 05:00:50.668 DEBUG [GadgetronTimer.h:73] GenericReconCartesianGrappaGadget::compute_image_header:0.762000 ms
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:100] sending out image array, acquisition boundary [RO E1 E2 CHA N S SLC] = [192 192 1 1 40 1 1]
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 0 0 0 ] -- Image series -- 300 -- Image number -- 1
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 1 0 0 ] -- Image series -- 300 -- Image number -- 2
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 2 0 0 ] -- Image series -- 300 -- Image number -- 3
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 3 0 0 ] -- Image series -- 300 -- Image number -- 4
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 4 0 0 ] -- Image series -- 300 -- Image number -- 5
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 5 0 0 ] -- Image series -- 300 -- Image number -- 6
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 6 0 0 ] -- Image series -- 300 -- Image number -- 7
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 7 0 0 ] -- Image series -- 300 -- Image number -- 8
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 8 0 0 ] -- Image series -- 300 -- Image number -- 9
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 9 0 0 ] -- Image series -- 300 -- Image number -- 10
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 10 0 0 ] -- Image series -- 300 -- Image number -- 11
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 11 0 0 ] -- Image series -- 300 -- Image number -- 12
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 12 0 0 ] -- Image series -- 300 -- Image number -- 13
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 13 0 0 ] -- Image series -- 300 -- Image number -- 14
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 14 0 0 ] -- Image series -- 300 -- Image number -- 15
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 15 0 0 ] -- Image series -- 300 -- Image number -- 16
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 16 0 0 ] -- Image series -- 300 -- Image number -- 17
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 17 0 0 ] -- Image series -- 300 -- Image number -- 18
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 18 0 0 ] -- Image series -- 300 -- Image number -- 19
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 19 0 0 ] -- Image series -- 300 -- Image number -- 20
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 20 0 0 ] -- Image series -- 300 -- Image number -- 21
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 21 0 0 ] -- Image series -- 300 -- Image number -- 22
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 22 0 0 ] -- Image series -- 300 -- Image number -- 23
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 23 0 0 ] -- Image series -- 300 -- Image number -- 24
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 24 0 0 ] -- Image series -- 300 -- Image number -- 25
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 25 0 0 ] -- Image series -- 300 -- Image number -- 26
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 26 0 0 ] -- Image series -- 300 -- Image number -- 27
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 27 0 0 ] -- Image series -- 300 -- Image number -- 28
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 28 0 0 ] -- Image series -- 300 -- Image number -- 29
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 29 0 0 ] -- Image series -- 300 -- Image number -- 30
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 30 0 0 ] -- Image series -- 300 -- Image number -- 31
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 31 0 0 ] -- Image series -- 300 -- Image number -- 32
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 32 0 0 ] -- Image series -- 300 -- Image number -- 33
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 33 0 0 ] -- Image series -- 300 -- Image number -- 34
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 34 0 0 ] -- Image series -- 300 -- Image number -- 35
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 35 0 0 ] -- Image series -- 300 -- Image number -- 36
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 36 0 0 ] -- Image series -- 300 -- Image number -- 37
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 37 0 0 ] -- Image series -- 300 -- Image number -- 38
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 38 0 0 ] -- Image series -- 300 -- Image number -- 39
01-28 05:00:50.673 DEBUG [ImageArraySendMixin.hpp:117] sending out SNR_MAP image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 39 0 0 ] -- Image series -- 300 -- Image number -- 40
01-28 05:00:50.673 DEBUG [GadgetronTimer.h:73] send out gfactor array, snr map:2.767000 ms
01-28 05:00:50.673 DEBUG [GenericReconPartialFourierHandlingGadget.cpp:47] GenericReconPartialFourierHandlingGadget::process(...) starts ...
01-28 05:00:50.674 DEBUG [GenericReconPartialFourierHandlingGadget.cpp:150] lenRO == RO && lenE1 == E1 && lenE2 == E2
01-28 05:00:50.674 DEBUG [GenericReconKSpaceFilteringGadget.cpp:74] GenericReconKSpaceFilteringGadget::process(...) starts ...
01-28 05:00:50.674 DEBUG [GenericReconKSpaceFilteringGadget.cpp:84] ----> GenericReconKSpaceFilteringGadget::process(...) has been called 1 times ...
01-28 05:00:50.674 DEBUG [GenericReconKSpaceFilteringGadget.cpp:87] --------------Gagdgetron ND Array -------------
Array dimension is : 7
Array size is : 192 192 1 1 40 1 1
Array data type is : St7complexIfE
Byte number for each element is : 8
Number of array size in bytes is : 11,796,480
Delete data on destruction flag is : 1
01-28 05:00:50.674 WARNING [mri_core_stream.cpp:102] The pre-set buffer names do not include coil_map ...
01-28 05:00:50.674 WARNING [mri_core_stream.h:112] Generic reconstruction chain, the pre-set buffer names do not include coil_map; the data will not be saved into the buffer ...
01-28 05:00:50.674 WARNING [mri_core_stream.cpp:102] The pre-set buffer names do not include gfactor ...
01-28 05:00:50.674 WARNING [mri_core_stream.h:112] Generic reconstruction chain, the pre-set buffer names do not include gfactor; the data will not be saved into the buffer ...
01-28 05:00:50.674 WARNING [mri_core_stream.cpp:102] The pre-set buffer names do not include reconed_images ...
01-28 05:00:50.674 WARNING [mri_core_stream.h:112] Generic reconstruction chain, the pre-set buffer names do not include reconed_images; the data will not be saved into the buffer ...
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:100] sending out image array, acquisition boundary [RO E1 E2 CHA N S SLC] = [192 192 1 1 40 1 1]
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 0 0 0 ] -- Image series -- 1 -- Image number -- 1
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 1 0 0 ] -- Image series -- 1 -- Image number -- 2
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 2 0 0 ] -- Image series -- 1 -- Image number -- 3
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 3 0 0 ] -- Image series -- 1 -- Image number -- 4
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 4 0 0 ] -- Image series -- 1 -- Image number -- 5
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 5 0 0 ] -- Image series -- 1 -- Image number -- 6
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 6 0 0 ] -- Image series -- 1 -- Image number -- 7
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 7 0 0 ] -- Image series -- 1 -- Image number -- 8
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 8 0 0 ] -- Image series -- 1 -- Image number -- 9
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 9 0 0 ] -- Image series -- 1 -- Image number -- 10
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 10 0 0 ] -- Image series -- 1 -- Image number -- 11
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 11 0 0 ] -- Image series -- 1 -- Image number -- 12
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 12 0 0 ] -- Image series -- 1 -- Image number -- 13
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 13 0 0 ] -- Image series -- 1 -- Image number -- 14
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 14 0 0 ] -- Image series -- 1 -- Image number -- 15
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 15 0 0 ] -- Image series -- 1 -- Image number -- 16
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 16 0 0 ] -- Image series -- 1 -- Image number -- 17
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 17 0 0 ] -- Image series -- 1 -- Image number -- 18
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 18 0 0 ] -- Image series -- 1 -- Image number -- 19
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 19 0 0 ] -- Image series -- 1 -- Image number -- 20
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 20 0 0 ] -- Image series -- 1 -- Image number -- 21
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 21 0 0 ] -- Image series -- 1 -- Image number -- 22
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 22 0 0 ] -- Image series -- 1 -- Image number -- 23
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 23 0 0 ] -- Image series -- 1 -- Image number -- 24
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 24 0 0 ] -- Image series -- 1 -- Image number -- 25
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 25 0 0 ] -- Image series -- 1 -- Image number -- 26
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 26 0 0 ] -- Image series -- 1 -- Image number -- 27
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 27 0 0 ] -- Image series -- 1 -- Image number -- 28
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 28 0 0 ] -- Image series -- 1 -- Image number -- 29
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 29 0 0 ] -- Image series -- 1 -- Image number -- 30
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 30 0 0 ] -- Image series -- 1 -- Image number -- 31
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 31 0 0 ] -- Image series -- 1 -- Image number -- 32
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 32 0 0 ] -- Image series -- 1 -- Image number -- 33
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 33 0 0 ] -- Image series -- 1 -- Image number -- 34
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 34 0 0 ] -- Image series -- 1 -- Image number -- 35
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 35 0 0 ] -- Image series -- 1 -- Image number -- 36
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 36 0 0 ] -- Image series -- 1 -- Image number -- 37
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 37 0 0 ] -- Image series -- 1 -- Image number -- 38
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 38 0 0 ] -- Image series -- 1 -- Image number -- 39
01-28 05:00:50.674 DEBUG [ImageArraySendMixin.hpp:117] sending out Image image [CHA SLC CON PHS REP SET AVE] = [0 0 0 0 39 0 0 ] -- Image series -- 1 -- Image number -- 40
01-28 05:00:50.674 DEBUG [GadgetronTimer.h:73] GenericReconCartesianGrappaGadget::send_out_image_array:0.325000 ms
01-28 05:00:50.674 DEBUG [GadgetronTimer.h:73] GenericReconCartesianGrappaGadget::process:255.349000 ms
01-28 05:00:50.676 DEBUG [GenericReconCartesianGrappaGadget.cpp:734] GenericReconCartesianGrappaGadget - destructor
01-28 05:00:50.678 DEBUG [GenericReconPartialFourierHandlingGadget.cpp:47] GenericReconPartialFourierHandlingGadget::process(...) starts ...
01-28 05:00:50.678 DEBUG [GenericReconPartialFourierHandlingGadget.cpp:150] lenRO == RO && lenE1 == E1 && lenE2 == E2
01-28 05:00:50.690 DEBUG [GenericReconKSpaceFilteringGadget.cpp:411] GenericReconKSpaceFilteringGadget::process(...) ends ...
01-28 05:00:50.690 DEBUG [GenericReconKSpaceFilteringGadget.cpp:74] GenericReconKSpaceFilteringGadget::process(...) starts ...
01-28 05:00:50.690 DEBUG [GenericReconKSpaceFilteringGadget.cpp:84] ----> GenericReconKSpaceFilteringGadget::process(...) has been called 2 times ...
01-28 05:00:50.690 DEBUG [GenericReconKSpaceFilteringGadget.cpp:87] --------------Gagdgetron ND Array -------------
Array dimension is : 7
Array size is : 192 192 1 1 40 1 1
Array data type is : St7complexIfE
Byte number for each element is : 8
Number of array size in bytes is : 11,796,480
Delete data on destruction flag is : 1
01-28 05:00:50.690 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:73] GenericReconFieldOfViewAdjustmentGadget::process(...) starts ...
01-28 05:00:50.691 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:83] ----> GenericReconFieldOfViewAdjustmentGadget::process(...) has been called 1 times ...
01-28 05:00:50.691 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:86] --------------Gagdgetron ND Array -------------
Array dimension is : 7
Array size is : 192 192 1 1 40 1 1
Array data type is : St7complexIfE
Byte number for each element is : 8
Number of array size in bytes is : 11,796,480
Delete data on destruction flag is : 1
01-28 05:00:50.706 WARNING [mri_core_stream.cpp:102] The pre-set buffer names do not include reconed_images_after_post_processing ...
01-28 05:00:50.706 WARNING [mri_core_stream.h:112] Generic reconstruction chain, the pre-set buffer names do not include reconed_images_after_post_processing; the data will not be saved into the buffer ...
01-28 05:00:50.706 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:101] GenericReconFieldOfViewAdjustmentGadget::process(...) ends ...
01-28 05:00:50.706 DEBUG [GenericReconNoiseStdMapComputingGadget.cpp:40] ----> GenericReconNoiseStdMapComputingGadget::process(...) has been called 1 times ...
01-28 05:00:50.706 DEBUG [GenericReconNoiseStdMapComputingGadget.cpp:43] --------------Gagdgetron ND Array -------------
Array dimension is : 7
Array size is : 192 192 1 1 40 1 1
Array data type is : St7complexIfE
Byte number for each element is : 8
Number of array size in bytes is : 11,796,480
Delete data on destruction flag is : 1
01-28 05:00:50.721 DEBUG [GenericReconImageArrayScalingGadget.cpp:49] GenericReconImageArrayScalingGadget::process(...) starts ...
01-28 05:00:50.722 DEBUG [GenericReconImageArrayScalingGadget.cpp:133] GenericReconImageArrayScalingGadget::process(...) ends ...
01-28 05:00:50.726 DEBUG [GenericReconKSpaceFilteringGadget.cpp:411] GenericReconKSpaceFilteringGadget::process(...) ends ...
01-28 05:00:50.728 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:73] GenericReconFieldOfViewAdjustmentGadget::process(...) starts ...
01-28 05:00:50.728 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:83] ----> GenericReconFieldOfViewAdjustmentGadget::process(...) has been called 2 times ...
01-28 05:00:50.728 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:86] --------------Gagdgetron ND Array -------------
Array dimension is : 7
Array size is : 192 192 1 1 40 1 1
Array data type is : St7complexIfE
Byte number for each element is : 8
Number of array size in bytes is : 11,796,480
Delete data on destruction flag is : 1
01-28 05:00:50.736 WARNING [mri_core_stream.cpp:102] The pre-set buffer names do not include reconed_images_after_post_processing ...
01-28 05:00:50.736 WARNING [mri_core_stream.h:112] Generic reconstruction chain, the pre-set buffer names do not include reconed_images_after_post_processing; the data will not be saved into the buffer ...
01-28 05:00:50.736 DEBUG [GenericReconFieldOfViewAdjustmentGadget.cpp:101] GenericReconFieldOfViewAdjustmentGadget::process(...) ends ...
01-28 05:00:50.760 DEBUG [GenericReconNoiseStdMapComputingGadget.cpp:140] GenericReconNoiseStdMapComputingGadget::process(...) ends ...
01-28 05:00:50.764 DEBUG [GenericReconNoiseStdMapComputingGadget.cpp:40] ----> GenericReconNoiseStdMapComputingGadget::process(...) has been called 2 times ...
01-28 05:00:50.764 DEBUG [GenericReconNoiseStdMapComputingGadget.cpp:43] --------------Gagdgetron ND Array -------------
Array dimension is : 7
Array size is : 192 192 1 1 40 1 1
Array data type is : St7complexIfE
Byte number for each element is : 8
Number of array size in bytes is : 11,796,480
Delete data on destruction flag is : 1
01-28 05:00:50.765 DEBUG [GenericReconImageArrayScalingGadget.cpp:49] GenericReconImageArrayScalingGadget::process(...) starts ...
01-28 05:00:50.765 DEBUG [GenericReconImageArrayScalingGadget.cpp:133] GenericReconImageArrayScalingGadget::process(...) ends ...
01-28 05:00:50.772 DEBUG [main.cpp:119] Finished consuming stream
Currently, Pingvin's logging is unstructured and messy.
Example, running `Generic_Cartesian_Grappa_SNR.xml`
Going forward, we want structured logging, so Pingvin logs are easily parsed and searched.