Skip to content

NCBI datasets updates do not account for key removal #5

@ccaio

Description

@ccaio

Issue description:
The pipeline to update ncbi datasets currently does not account for removal of refseq_category key from assemblies that had the "refseq"status moved to a different assembly.

Example for Capra ibex
The refseq_category information is being kept in both old entries and newly assigned RefSeq:
Here both assemblies are reference:

-- On today's dataset output, only one has a RefSeq ID:

capra.json

Metadata

Metadata

Assignees

Labels

bugSomething isn't working

Type

No type

Projects

Status

No status

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions