Issue description:
The pipeline to update ncbi datasets currently does not account for removal of refseq_category key from assemblies that had the "refseq"status moved to a different assembly.
Example for Capra ibex
The refseq_category information is being kept in both old entries and newly assigned RefSeq:
Here both assemblies are reference:
-- On today's dataset output, only one has a RefSeq ID:
capra.json
Issue description:
The pipeline to update ncbi datasets currently does not account for removal of refseq_category key from assemblies that had the "refseq"status moved to a different assembly.
Example for Capra ibex
The refseq_category information is being kept in both old entries and newly assigned RefSeq:
Here both assemblies are reference:
-- On today's dataset output, only one has a RefSeq ID:
capra.json