sync.yml

name: Sync fork with upstream (direct)

on:
  schedule:
    - cron: '0 3 * * *'
  workflow_dispatch:

permissions:
  contents: write

jobs:
  sync:
    runs-on: ubuntu-latest

    steps:
      - name: Checkout main
        uses: actions/checkout@v4
        with:
          ref: main
          fetch-depth: 0

      - name: Add upstream
        run: |
          git remote remove upstream || true
          git remote add upstream https://github.com/Nicolas-Radomski/GenomicBasedClassification.git
          git fetch upstream

      - name: Merge upstream/main into main
        run: |
          git config user.name "github-actions[bot]"
          git config user.email "github-actions[bot]@users.noreply.github.com"
          git merge upstream/main --no-edit

      - name: Push to origin/main
        run: |
          git push origin main