python bin/hubble.py -s data/sample.vcf
Returns the following error :
File "/FREEBOX/Bioinfo/pharmaco/tools/Hubble2D6/bin/predict.py", line 36, in run
data = self.load_data()
File "/FREEBOX/Bioinfo/pharmaco/tools/Hubble2D6/bin/predict.py", line 174, in load_data
seq1 = [int(x) for x in fields[1].split(',')]
IndexError: list index out of range
By the way, here is something I don't understand. You are trying to split fields 1 and fields 2 which correspond to POSITION and ID .. ??
seq1 = [int(x) for x in fields[1].split(',')]
seq2 = [int(x) for x in fields[2].split(',')]
python bin/hubble.py -s data/sample.vcfReturns the following error :
File "/FREEBOX/Bioinfo/pharmaco/tools/Hubble2D6/bin/predict.py", line 36, in run
data = self.load_data()
File "/FREEBOX/Bioinfo/pharmaco/tools/Hubble2D6/bin/predict.py", line 174, in load_data
seq1 = [int(x) for x in fields[1].split(',')]
IndexError: list index out of range
By the way, here is something I don't understand. You are trying to split fields 1 and fields 2 which correspond to POSITION and ID .. ??