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NAMESPACE
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36 lines (35 loc) · 865 Bytes
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# Generated by roxygen2: do not edit by hand
export(add_bams)
export(annotate_peaks)
export(bowtie2_align)
export(bowtie2_index)
export(call_peaks)
export(count_features)
export(fastqc)
export(get_seqs)
export(make_bigwigs)
export(print_message)
export(pull_setting)
export(retrieve_reads)
export(set_settings)
export(star_align)
export(star_index)
export(zent_tools)
exportClasses(zent_obj)
import(data.table)
import(methods)
importFrom(ChIPseeker,annotatePeak)
importFrom(GenomicFeatures,makeTxDbFromGFF)
importFrom(Rsamtools,FaFile)
importFrom(Rsamtools,getSeq)
importFrom(Rsubread,featureCounts)
importFrom(purrr,imap)
importFrom(purrr,iwalk)
importFrom(purrr,map)
importFrom(purrr,pmap)
importFrom(purrr,walk)
importFrom(rtracklayer,import)
importFrom(stringr,str_c)
importFrom(stringr,str_detect)
importFrom(stringr,str_glue)
importFrom(stringr,str_replace)