I am trying to renumber the residue numbers starting from 1 (first residue should be 1) for the attached protein https://www.dropbox.com/s/z7xj629fhq42ey3/test.pdb?dl=0
If I use
pdb_residue_renumber test.pdb
it doesn't really do the numbering properly. Also when I tried to use the flag -s START_RES using following command
pdb_residue_renumber test.pdb -s 1 -r False -g True I got an error like
ERROR! false could not be retrieved!
ERROR! true could not be retrieved!
Usage: pdb_residue_renumber [options] pdb files and directories with pdb files
pdb_residue_renumber: error: pdb could not be found on rcsb!
Any help or pointing towards some solution in this matter will be highly appreciated.
Best regards,
Bhakat
I am trying to renumber the residue numbers starting from 1 (first residue should be 1) for the attached protein https://www.dropbox.com/s/z7xj629fhq42ey3/test.pdb?dl=0
If I use
pdb_residue_renumber test.pdbit doesn't really do the numbering properly. Also when I tried to use the flag
-s START_RESusing following commandpdb_residue_renumber test.pdb -s 1 -r False -g TrueI got an error likeERROR! false could not be retrieved!ERROR! true could not be retrieved!Usage: pdb_residue_renumber [options] pdb files and directories with pdb filespdb_residue_renumber: error: pdb could not be found on rcsb!Any help or pointing towards some solution in this matter will be highly appreciated.
Best regards,
Bhakat